AMCG00013399


Basic Information

Item Value
gene id AMCG00013399
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30339802 ~ 30344005 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013399
ATGGGGGAGAAACCGCACAAGGCGGGGGCAGCAGCTGCGGACAGGCGTCGCCCAGACATCCAGACGCCACCGAGCGCCCCACTCTCCCCCCCCGGGCGCCGGATTCAAGTCCCCTCTACGGCACCGGTCGTCCTGCAAAGCAACATGGCGGCGCCCACGGCTCACACGGTGCGAGTGCGGCTGTACTTCGACTACCCGCCGCCCGCCGTGGCCGACTGCCGCATGTGCTGGCTGCTGGTGGACCTGAGCCGGTGCCGTGTGGTGGCGGACCTGGCCAGCATCGTGCGGGAGCGCTTCGACTTCAGCCGCGGCACAGTGCTCAGCCTGTTCCTGGAGGACTGCTACCTGCCGCCCGCCGAGAGCATCCACGTCGTGCGGGACAACGACAGCGTCAGGGTGAAAGTCGAGGGGCTGCCGGAAGAGAACGGGTTTGAGCGCAGCGGCAGCGTCTCCCCCTGGtcggtgaggaagaggaggaggagcagggaaGGGGAGTCCCCGGAGAGCGggctgaggaagaggaggaagagcagggaGGGCAGCCGTGGCAGCGCCCGGCCGGGGGACACAGAGCCTGCCCAGTGCGAGGAAGGGGGCAGcagcaagaagaagaagaaaaagaagaagaagaagaagaaacaaccGCCACCTGTGACAGACGAGTCAGAGGCACCAGTGTCCCCGGGGGGGCCCACGCAGCTGGCGAGGAAGAAGGCAGCTGCCGTCTCCAAGGCCAAGGTGGCGAGAGATGCAGCGAAGACCACAAGAGTGGCTTCACCCCCCAGCAGAAGGGACGCCCACAAGAAGCCGGCCCCGAGagacagaagcagcagcagcagcagtgaggggGAGCAGGGGGCCTCCAGCAGTAAGACCGCCGGGGGCAGCACAGTCGGACCAAAGGGTGGCAAGACCCGGCCTAAGCCCAGCCTGAGCCAGGGCAGCCCGGCCGGGGGCCAGACAGCAGGCAGACAGGCGGCTCTGGCAGCACGGGCCCCATCCTCCGGCTCCTCCACAGACTCCTCCAGCACCGCAGAGGCCCCAGTCCCCCGCCCCGCCAAGCCTGCACTCCAGAAGGCCTCAGCTCCGGCTCCTGCGGCTGTGCCCGTGGTGCCGCCACGCCGCCGccgctccagctccagctctgacAGCTCCAGCTCTGACCAGCAGGTTATCAAGCGTCCCGGACCGGAGCCCTCTCCCCAGCCATCCATGCGCGGTAGAGGCACTCCTGGTGGCCGCGGTGCGCCCCAGGGGGCACGTGGAGAGGGGCCCGGGGGCACAGGCAGGGGCTTCTTCCCGGGAGCCGGCAGGGGGCTGGGCCGAGGGGACGGGAGATTCCCCTGGAGGGGATTGGGGCCGAGGGGTGGCCGGGGCCGGGCAAGAGGGGCCCCTGGGAACCATGTGTTTTACAGCTATGAGGAGAGCGAGTCGCCGCAGGACAGGCAACACGGGTGGCAGCAGCCCAGCGACACCCTGACGAACACCGCGGTGGTGCTGCAGAACCCCCCCGCGGTGGTCCCTAACCGAGACTACACCACCCTGCCCCTGCTGGCGGCCCCCCCCGCCGTGGGACAGAAGATTGCCTTTAAGCTGCTGGAGCTGACGGAGAACTACACCCCCGAGGAGGGAAAGATATTGGGTGTGAACCCGAGCACCAATCAAGTGGAGCTGCAGCTGCTGTCATCGGCGCCAGGGAAGTTTGACCTGGTGTACCACACGCCCGATGGCGCGGAGGTGGTGGAGTACGCTGTGTCCCGTGGATCCAAGCTGACTGAGAGGTGGGACTCTCTCCTGGAGCCCAGGCTGCTGGTGGAGGGCAACGCGAACTGACGCCACTGTCCCTTCCTGCCATCcgaatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtagcggTGCCAGGCCGGActgactgtttgtgtgtgtatgtttgtttgtctctctgtctgtgtgtcgtGGCAGTGCCAGGCCGGGCTGCCTGCGTCCCGTGAGGAAGAGGAGTTCGCTGttcttgtgttttaaagtgttgTGCTGTGACGCCTCTTCAGGACAGTGGAGGACCGCTCTGTTtcttgggggggaggggggttgtgtcgggtttatttttgtacatgttGGTCTGACCGAAATCttaatgaattaaatgaaactCACTTTTTAAAGGC
>TU55048
GGGCCCCTGGGAACCATGTGTTTTACAGCTATGAGGAGAGCGAGTCGCCGCAGGACAGGCAACACGGGTGGCAGCAGCCCAGCGACACCCTGACGAACACCGCGGTGGTGCTGCAGAACCCCCCCGCGGTGGTCCCTAACCGAGACTACACCACCCTGCCCCTGCTGGCGGCCCCCCCCGCCGTGGGACAGAAGATTGCCTTTAAGCTGCTGGAGCTGACGGAGAACTACACCCCCGAGGTTTCGGACTACAAGGAGGGAAAGATATTGGGTGTGAACCCGAGCACCAATCAAGTGGAGCTGCAGCTGCTGTCATCGGCGCCAGTGCCGCCCGAGCCAGGGAAGTTTGACCTGGTGTACCACACGCCCGATGGCGCGGAGGTGGTGGAGTACGCTGTGTCCCGTGGATCCAAGCTGACTGAGAGGTGGGACTCTCTCCTGGAGCCCAGGCTGCTGGTGGAGGGCAACGCGAACTGACGCCACTGTCCCTTCCTGCCATCcgaatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtagcggTGCCAGGCCGGActgactgtttgtgtgtgtatgtttgtttgtctctctgtctgtgtgtcgtGGCAGTGCCAGGCCGGGCTGCCTGCGTCCCGTGAGGAAGAGGAGTTCGCTGttcttgtgttttaaagtgttgTGCTGTGACGCCTCTTCAGGACAGTGGAGGACCGCTCTGTTtcttgggggggag

Function

GO:

id name namespace
GO:0000387 spliceosomal snRNP assembly biological_process
GO:0030576 Cajal body organization biological_process

KEGG:

id description
K13150 COIL, CLN80; coilin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013399 True 2165 mRNA 0.65 8 30339802 30344005
TU55048 False 726 lncRNA 0.61 6 30342469 30343923

Neighbor

gene id symbol gene type direction distance location
AMCG00013402 NA coding upstream 23383 30311722 ~ 30316419 (+)
AMCG00013400 LOC108248236 coding upstream 29011 30302820 ~ 30310791 (+)
AMCG00013395 NA coding upstream 56246 30279191 ~ 30283556 (+)
AMCG00013394 NA coding upstream 75861 30256283 ~ 30263941 (+)
AMCG00013398 NA coding upstream 122778 30208073 ~ 30217024 (+)
AMCG00013401 NA coding downstream 1316 30345321 ~ 30351835 (+)
AMCG00013406 rab11fip4a,LOC107654480,LOC108274243,LOC106564646,LOC107688103 coding downstream 21867 30365872 ~ 30390476 (+)
AMCG00013407 NA coding downstream 95669 30439674 ~ 30452954 (+)
AMCG00013418 NA coding downstream 181850 30525855 ~ 30534025 (+)
AMCG00013415 arhgdia,LOC107654583 coding downstream 192798 30536803 ~ 30541363 (+)
G43895 NA non-coding upstream 893104 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 1137081 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 1161536 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 1181309 29156699 ~ 29158493 (+)
G43810 NA non-coding upstream 1188468 29149978 ~ 29151334 (+)
G44182 NA non-coding downstream 111667 30455672 ~ 30457671 (+)
G44306 NA non-coding downstream 390531 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 392804 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 428376 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 430177 30774182 ~ 30774548 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other upstream 110781 30218910 ~ 30229021 (+)
AMCG00013388 NA other upstream 249685 30083644 ~ 30090117 (+)
AMCG00013382 NA other upstream 265054 30063380 ~ 30074748 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other upstream 411105 29885762 ~ 29928697 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other upstream 672751 29640623 ~ 29667051 (+)
AMCG00013408 NA other downstream 81002 30425007 ~ 30430649 (+)
AMCG00013416 alyref,LOC106606979 other downstream 146822 30490827 ~ 30496613 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other downstream 219235 30563240 ~ 30568219 (+)
G44325 NA other downstream 432846 30776851 ~ 30777169 (+)
AMCG00013468 NA other downstream 1557525 31901530 ~ 31911801 (+)

Expression


Co-expression Network