AMCG00013400 (LOC108248236)


Basic Information

Item Value
gene id AMCG00013400
gene name LOC108248236
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30302820 ~ 30310791 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013400
CTCTCGCGCACCCCCCCCAGCGCGCGGAGCCGGCGGTGTGTGCACGGTGGGGGGGTCGTTGGGATTGAATCGCGCACGTCACTGTAATACGGGCGCTGATGTCACACTGCATGCCCAGCTCGCCGTCCTGCAGGAATGAGGATGTAGTTGCTGTGCTCTGTAGCATCACCGCCatcaccccctctctctccagaggCATGACGAGCGCGCCCGGCGTTGCTCAATCCCTCGGGCCGGACATCCCTCTCCCCGCAGCCGCAGCGCAGCACTGAGCGCCCTGGAAGGATTATAATTGTCACTTTATTATTTGCTCCAAGTCCCACTTGTGCTGCATCCAAACCCGGCGATGGAGGTGGAGGAGGGCAGCGGGGAGCCCCGGGAGGACTGGACCCTGCTGGCCTGGACCGGGCTGGCGATCGTGCTGCCCGTGCTGCTGACCCTGTGGTGCAGTGTGCAGCGCTCCAAGCGCAAGGGGCTCATCCAGGACATCTTCCGGAGGAGCAAGCACGCCTGGCGCCTCACCGACCTGTTCAGCAAGCCCACCTACTGCTGCGTGTGTTCCCAGCACATCCTGCGGGGCGCCTTCTGTGAGTGCTGCGGGGTCTGCGCCGACGAGGGCTGCCTGCCCCGGGCCGACCGCAGCCTGTCCTGCAAGGAGATCATGTCGCCGGCGCAGGCGGACGGCTCCCTGGCGCACCGCTGGGTCCGGGGCAATGTGCCGCTGTGCAGCTGCTGCGCGGTGTGCAAACAGCAGTGCGGCACGCAGCCCAAACTCTGCGACTTCAGGTGCGTCTGGTGTCAGACCGTGGTGCACGAGGACTGCAAGGCCAGCCTGCCGGGGGGGGGGCGCTGTGACCTGGGGGAGTTCCGCAGCCTGATCATCCCCCCCCACTACCTGCACCGCATCAACAGGCTGCGCCGCGGGCAGACAGACGAGTACAGCAAGctAGCAGCTGATTGCGGGCCCGGCTGGACCCCGGTGCTGGTCCTGGCGAACACGCGCAGCGGCAACAACATGGGCGAGGCGCTGCTGGGGGAGTTCCGCACGCTGCTCAACCCGGTGCAGgTGTTTGACCTGACGCAGTTCCCCCCCTCCAAGGCCCTGCAGTTGTGCACTCTGCTCCCGGGgggctgtgtgcgtgtgctggTGTGCGGGGGCGATGGCACTGTGGGCTGGGGCCAGGAGCAGTTCGTCCCACAGGTCACCATCCTGCCGCTGGGGACGGGCAACGACCTGTCCAACTCTCTGGGCTGGGGCACTGGCTTCGCACGTGAAGTCCCCGTGGAGCAGGTGCTGCGAGACGTGCTGGACGCAGAGGCTGTCAAACTGGACAGgtgGAAAGTTCAGGTGGCGTCTAAAGGCTATTACAGCTTCCGAAAACCAAAGGCCGTCTATTTCTTCTATGGGACCAAAGACTGCTTAGTTCAGGAGTGCAAAGACCTGGACAAGAAGATTGAGTTGGAGCTGGATGGCGAGAGGGTGCAGCTGCCCAGCCTGGAGGGCATCATCGTGCTGAACATCGGGTATTGGGGCGGAGGCTGCCGGCTGTGGGAGGGTATGGGGGATGAGCCGTGCCCCCCGACCCGGCTGGATGACGGGCTGCTGGAGGTGGTGGGTGTATTCGGCTCCTTCCACTGCGCTCAGATCCAGGTCAAGCTGGCCAACCCGGTGCGGCTCGGCCAGGCGCACACCGTCAGGCTGGTGCTGAAGAGCTCCCGGATGCCCATGCAGGTGGACGGAGAGCCGTGGGCGCAGGGCCCGTGCACCGTCACCATCACGCACAAGACCCAGGCGCTGGTGCTGTACCGTGCCGCCGAGCAGACCGACGAGGACGATGAGGACAACTCCAGCGGCTCTGATCACGAGCCCGGGTCCCCCCCGGCCCAGCCGGTCCCGCCCACCTAGCCCCGGGGCCCCCCGCTGCGCAGTGTCACCGCTGCCCGGGTCAGCACGCTCACCGGGGGGGGCTGAGGCACTGCGCTGCGGATCgaggtgctgtgtgtgtgtgtgtgtgtgtgtctatgtgctCGATGTGCCACAGAACAACAGATTACAGGAGCTGTGTCTGTCACCTGTTGTGCATCGTTGCAGCGAGTAGCCGCTGAAGGCTACCATGTTTGCAGCGTGTTTGCAGCTGAAGGCTGGCATGTCTGCAGTTTGATTGTAGCATGTTGCCGCTGCAGATCGTCTGCTGCTGACGTGAAGGCTCTGTGGAAGCTGTGCTCGGTGCCAGAGCCTCCCGTCCTCCTATGATCCACGTCAGGCTGGGTCGGCCAGACAGTTGCAAACCGAGAGGCGCCAGAGAGTCGGGGCTACTCCGATCCATCCTAGTGGACTGTTGGGTGGCAGTAGTGCAGCTAAACCCATGATCTcgttattcattaattaattaattaaacatgcgCTCCTACATTTCCTGCTGCATTCATTCTGAACGTGAGTTCGGTTTGTCTTGTGCGTTTCAGTGACTGCAGTGTCTTCACTCCTCCCTGACCCAGATTCGACTCCTAAAACATGTGACACATGTGACTTTCCTTAACACGACACAGACGGGGTTCACTGTGCTGATGATGCCCCTCAATGACACACCGGTAGGACGGCAGAGTCTTATTTagattattgattttgtttacattgattCGGTGACATACTCTGCAGTTCACAGGCtgtgtagtatgtgtgtgtgagagtgtgtttgtgtatctgtgtgggtggcaggctgtgtgtgtgtattgcatcCTCAGTGTGTGTGATGGAGAGGGGAGATTAAAGACTGCGCCCAGCCCTTCCTGCCTGCTTGTCTGCCTGTCACAGAGCTCGTGTTTTATTATCTTCTGCGCCTATCTGGCCCCTCCTATCCTGGATGttagtcttattattattaataataatattatcatgCCCTACAGAGATAGTCACTGTTCGCTTTGTGCTGTATGCGCAGCTGCCCATGTCGGCCGCTAGGTGTCGCCCTTGCGCAGAGGCTGAAGAGAGACGCAGTTGACAGTGGATGTTAAGGAGACAGAAATTGTCCTAAAAACATGAATACGCACAGTGTGTCGCATTATCCTGGACTttactgtttagtttttttaatgtgggTGGATTGTGGACCCGGGTGGGGAGAGTTGTGTAGCGTTCAGGGTGTTTGTGTTGACCTCATGTCAGAGGTTAAACCGCACAACGACTCCCATTAGTGAACGACCAGGAAAGTGAGTTTTCTTCTCACGCAACTGTTTTCACTTGATTGTGGTATTTGTGGCTTTAAACACAACATTGTGTTGCGCCTACTTGAACATATAAagaaatcttttattttaatatattttttgtgaattaGTTATTGGTGTTGTCTCTATATATTCGTATATAATTGTGCAAAACTCCGCTCAGTTCATTACCGTCGCTgctcatgttttgttttttaatattacatttttgtgcacTTTTTACTTTTTCGGCAGTATGAATGAATTGTGCTGTCAGTTGGTGTTTAATTTTCTCTGTGATGTGCTGGTCAGTGGGGTCTCACAGCAGGACAGACACAGCACAGTCTCTGACCCCCGACCGCTGTGCTGTGAAGAGACATTGCAGTCACAACCAGGTTCATTCCtacaggtgttttatttttatgtgagtTTTAATGCTGTGTTATTGCTCTGCAGGGTCGCGCTTATTAGTTTAAGCACtggtttacacacacactctaatgCGTTTAAAGAGACTTTCGTAAGAACACAGTGATTGTTGTGTTagaaaaaactttttatttggtttcaaaAAATGCGTTTATTTCTTGGCATcttctgttatttgtattgtattgtttggttTACAGAATATAGTTGGAGAGTCTAATAATACGGGGGTGTTATGCGTTGCGTCCAGCCTGCTGTCCTGAGAAGATCTCTTGATCAGTCAAGGCCGGACACCTTCAGTGTAGCGGTGTCCTGTCTGCACACGGATCTCAGTGCATTACATggctgtaatatattttttcaaaattggaTTGTTTGAACGCctctaaataaaatactatacatttagcgctatttatttaaatatgtagcCAACCAATAACGTAGTTTAGCAGCACCACTCCGAGATGAGGGTATTGACTTTAAAACTCAAACCTGATTATCTGTTCTATACTTTGCCACAAATGTTTCTTATTCTTGAAATGCGCAATTTCCAACACTGTCCGCACTGCCAGAGTATATTGAACCACTTCTTAACCAAGAGCGCCAAACACTTGTATAATTGTTAAGCCTTGTATTCCAGAGGCGAATTTAGTCCCTGTTGTTTCTGAATGTAATACTTAACGGACTGGTAGAGCAGGCATATATGTAAAGTTGAACTGTTTGAAGAGCGGAAAACCAGGGGCAGCATTTTGCATTTGATCGAATACTTCCAGCTTTTTCCCATCGGCTTCAGCCCGAGTGTGGATGCAGAATGCGTTTTAAAGCCCCATTTTCAGGATTTCAAATGCACGTTTTTCTCTCACCTGATGACCCGATTTTTGACAGTGAAGCGGTCACTGCTTTTGCAATATTGCACTGCGAGACTAAAACTGAATGtaagagtattttaaaatcatttatgGTTTTGGGAACAAACCCAGACGCATATTGTAAATAAGaactattttcttatttatttgtgtaaaaacaattgCGAATTGGATGGTTTAcgttgtattttctttgtgagtgaatttgtcaaataaatacatttaacaacacGCGTGTCTTTGTGCTGATTCG

Function

NR:

description
PREDICTED: diacylglycerol kinase epsilon-like

GO: NA

KEGG:

id description
K00901 dgkA, DGK; diacylglycerol kinase (ATP)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013400 True 4764 mRNA 0.53 10 30302820 30310791

Neighbor

gene id symbol gene type direction distance location
AMCG00013395 NA coding upstream 19264 30279191 ~ 30283556 (+)
AMCG00013394 NA coding upstream 38879 30256283 ~ 30263941 (+)
AMCG00013398 NA coding upstream 85796 30208073 ~ 30217024 (+)
AMCG00013397 NA coding upstream 108657 30186840 ~ 30194163 (+)
AMCG00013387 NA coding upstream 135002 30165054 ~ 30167818 (+)
AMCG00013402 NA coding downstream 931 30311722 ~ 30316419 (+)
AMCG00013401 NA coding downstream 34530 30345321 ~ 30351835 (+)
AMCG00013406 rab11fip4a,LOC107654480,LOC108274243,LOC106564646,LOC107688103 coding downstream 55081 30365872 ~ 30390476 (+)
AMCG00013407 NA coding downstream 128883 30439674 ~ 30452954 (+)
AMCG00013418 NA coding downstream 215064 30525855 ~ 30534025 (+)
G43895 NA non-coding upstream 856122 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 1100099 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 1124554 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 1144327 29156699 ~ 29158493 (+)
G43810 NA non-coding upstream 1151486 29149978 ~ 29151334 (+)
G44182 NA non-coding downstream 144881 30455672 ~ 30457671 (+)
G44306 NA non-coding downstream 423745 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 426018 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 461590 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 463391 30774182 ~ 30774548 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other upstream 73799 30218910 ~ 30229021 (+)
AMCG00013388 NA other upstream 212703 30083644 ~ 30090117 (+)
AMCG00013382 NA other upstream 228072 30063380 ~ 30074748 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other upstream 374123 29885762 ~ 29928697 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other upstream 635769 29640623 ~ 29667051 (+)
AMCG00013399 NA other downstream 29011 30339802 ~ 30344005 (+)
AMCG00013408 NA other downstream 114216 30425007 ~ 30430649 (+)
AMCG00013416 alyref,LOC106606979 other downstream 180036 30490827 ~ 30496613 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other downstream 252449 30563240 ~ 30568219 (+)
G44325 NA other downstream 466060 30776851 ~ 30777169 (+)

Expression


Co-expression Network