AMCG00013404


Basic Information

Item Value
gene id AMCG00013404
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30322265 ~ 30332700 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013404
CTGCGCAGTAGCAGCGCGCCCGCCCCCTCTCTGCGCAGAGCTGTCAGGCTGACTGCCCTGTGGACACGCAGTCCTGTCCCGTCTGCCCGCGGACACGCACCCACGTCGGGCTCTCTACGGGGAGGTCTCGTACGCACATCCGTAGGTACCTGGAAAGACAAGTCCTCCGTGAAAACAGCTTCCCTGTGCGACTGGCTGTGGCAGTTTCCTGGTGCCTACTATCGGTTAGTATCCCTCCTGTGAGCAACATGGCGGAGCAACCGTCGTCGCTGCTGGGCCTGGAGGAAGAGCTGACATGCAGCATCTGCCTGGGGCTGTTCGACAGCCCGGTGACCACCCCCTGCGGCCACAACTTCTGCACCAACTGCCTGGAGATGACCTGGCAGGAGTACCAGGAGGTGGCGCTGGGCTTCAACTGCCCTCAGTGCCGCACGCACTTCTACACCAAACCCATGCTGCAGAAGAACACGGTGCTCAGCACGGTGGTGAAGACCTTCCTTGCATCCCAGAAGAACAGCACCTCGGCGCCAGTATCAGAGTGCATCCTGCCGAAGGAGGTCGAACCGGCGGAGGAGCCCTCAGTGGAGGAGTCCATCCTGTGTGACACCTGCATGGTGAGCCAGGCCTCCAAGACCTGCCTGACCTGCATGGCGTCCTACTGTGAGACGCATGTCCGGCCGCACGTGGAGAACCCTGTGTTCACAGCGCACCAGCTGAGCGAGCCACTGTCGGACCTGCAGCAGCGCATCTGCCCCGAGCACCACAAGCTCATGGAGTTCTACTGCCAGCAGCACGGGCGCTGCATCTGCAGCATGTGCCTCCAGCAGACCCACAAGCCGTGCCGCTTCTCCACGCCGCAGGAGGTGCGCACCGAGCAGGAGTCGAAACTGAAGAAGAACGTGGTGCTGCTGGACGAGAAGATCGAGCTCACACGCAGCGTCATCTCGCAGGTGAAGGCGCAGCAGGACGCAGTGAAACTGCATGGCAGGATGGGCCGCCGCAGGGTGGTCCAGGAGTCCCAGCCCCTCAGTAAGCTCACACGCAAGGAACACAAGCTCACAGTCAAGTCTCGGCTCGCAGGACGTGGTCGGTGGAGAGACCAGCATTCACcgctgtctctgtctgtctgcggGGCTTGTCTTTGTCAGGAGTTGGCAGCCAGCAGGAAGCGGGCCATGCAGGAGAAGTACCGACTGGCGAGGGAGCTGCTGGCCCAGGACGAGCAGGATGCGCTGAAGGTGGTGGACCTGGAGCAGGAGAGCGCCCAGACCCGCGTCAAGACCCTGCTGCTGCGGCTGGGCCGGAACCTGGAGGAGATGAGCAGCGCCCGGCAGCGCATCGACAGCCTGCTGGCCCACAGCCACAGCGTCAGCTTCCTGCAGGGGGCCTCTCCCGCGATTCACACTGCGTTTGTATTTAATCAGCAGGTCCACCGCCACCATCGCAGCCACATCCGCCTTCGCATCTGCATCCTGAGCCAGGTGAGGGTTCGAGAAGTGCTGTCAGATTTGGGTCCTGgcatccagagacctggTCCCCGCTGCCATCCTAAACCCTGGAAAGATACCAGGGAAGAAGAAGAACCCTGGATACAAAACTCCCAAAGCCTCAAGGCTAGGTTCAGCGtcTGTGGCTCTCCAAACCCGGTGGCCAAGAGAAGTGACCTCCTGCAATGCGCCACGGTTCTGACCCTGGACCCCAAGACTGCCCACAAGCGCATCTTGCTCTCGGAAGACTTGACCAAGGCCTCTGTGTCGGAGGAGCAGACCTCTTACCCGGAGAACCCAGCCCGGTTCTCGGTGTGCTCCCAGGTCCTGTGCGGCAAGGGCTTCTCCCGTGGGCGGCACTACTGGGAGGTCAAGATGAGCAGCAACAACTTCTGTGCGGTGGGCCTGGCCTACAACAGCATCGAGCGCAAGGGCCCGACCAGCAAGCTGGGCCGCAACAAGCAGTCATGGTGCGTGGAGTGGTTCAACGTCAAGCTGTCTGCCTGGCATGACAACCAGGAGACGGTGCTGTTCAACCCCAGCCCCAGCCGCGTGGGCATCCTGCTGGATTGCGACGGCGGCTCTGTCACCTTCTACAACCTCTCCCGTGAACCTGCGGGCCACCACAGACACCCAGTGGACATGGCTGACTGGGACAGACACGCCCTCACACACCAGAGAGACTGGGGCATTAAAGTGAAAAGGCAGGGAGACGGGAACGAGGTCCACCGAAGCCCTCTTCGCAGCTGGAGTCTGGAGAGATATTACGTTACTCCTGGCACTCCGGCTGCCTGGCCATCCTGTGTGCCGCTCCTGGCCTCGCTGCCGAATGGAGGGCTGTCACAGCAGAGCGGCTCCACGGGCACGCTGGGCCTCCGCACTTAA

Function

GO: NA

KEGG:

id description
K10652 TRIM25, EFP; tripartite motif-containing protein 25

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013404 True 2372 mRNA 0.62 11 30322265 30332700

Neighbor

gene id symbol gene type direction distance location
AMCG00013392 NA coding downstream 157787 30155262 ~ 30164478 (-)
AMCG00013393 rhot1a,LOC108430568,LOC107729179 coding downstream 168907 30126697 ~ 30153358 (-)
AMCG00013391 NA coding downstream 195764 30117800 ~ 30126501 (-)
AMCG00013389 rhbdl3 coding downstream 221561 30091862 ~ 30100704 (-)
AMCG00013385 NA coding downstream 319383 29991300 ~ 30002882 (-)
AMCG00013403 NA coding upstream 748 30333448 ~ 30340461 (-)
AMCG00013410 NA coding upstream 97964 30430664 ~ 30436741 (-)
AMCG00013419 NA coding upstream 175251 30507951 ~ 30521671 (-)
AMCG00013420 NA coding upstream 191207 30523907 ~ 30533879 (-)
AMCG00013421 NA coding upstream 291276 30623976 ~ 30635826 (-)
G44230 NA non-coding downstream 11499 30307026 ~ 30310766 (-)
G44086 NA non-coding downstream 232118 30088803 ~ 30090147 (-)
G43919 NA non-coding downstream 822692 29497710 ~ 29499573 (-)
G43831 NA non-coding downstream 1200946 29119373 ~ 29121319 (-)
G43834 znf207,LOC107753267 non-coding downstream 1204304 29115222 ~ 29117961 (-)
G44213 NA non-coding upstream 51986 30384686 ~ 30455606 (-)
G44261 NA non-coding upstream 201271 30533971 ~ 30539317 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding upstream 207613 30540313 ~ 30562691 (-)
G44264 NA non-coding upstream 218689 30551389 ~ 30552050 (-)
G44259 p4hb,LOC107591928 non-coding upstream 221081 30553781 ~ 30599051 (-)
AMCG00013405 NA other downstream 31398 30286642 ~ 30290867 (-)
AMCG00013390 NA other downstream 137841 30165817 ~ 30184424 (-)
AMCG00013386 NA other downstream 238824 30080614 ~ 30083441 (-)
AMCG00013384 NA other downstream 260631 30040205 ~ 30061634 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other downstream 294035 29926383 ~ 30028230 (-)
G44243 NA other upstream 67187 30399887 ~ 30423025 (-)
AMCG00013409 LOC107590438 other upstream 123027 30455727 ~ 30464091 (-)
AMCG00013412 NA other upstream 135930 30468630 ~ 30482326 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other upstream 150605 30483305 ~ 30486331 (-)
AMCG00013425 NA other upstream 397587 30730287 ~ 30742643 (-)

Expression


Co-expression Network