AMCG00013405


Basic Information

Item Value
gene id AMCG00013405
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30286642 ~ 30290867 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013405
GGCAGAACCGGAGATGAAGAAGTTCGTGGTGCTCGGTTTGTGCCTGGTCTTACTGACCGTCCTCACAGaTGCCTCTCCAATTGTGAAGGAGAAGTTCGCAAAACAGCTCCTCAGGACCAAGAGGCAGGAGAGACCGAGGAAGGCGGGCTTTCCAGATGAGCCGTTGAGGGAGCACAATCTGTACATGCAGAGACTGGACCAGATCGCCCAGGAGACCAACATGGAGCACTGGCTCAACCCCCACTGCTTCCCCCGCTGCAACCGAAACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccccccccccgcactTGCAGACACACAGCGCTCGGAGGGGCTTCCTGCAGACCCCCCactcaccaccaccacctcctcgCACCCCCTGATCGCAACCGGGCCGAGGCGCGTTGTATCCCAGCACCCCCTCACCTGGAGGACGAGCTGCAGATACACGGGGGGATGGGGTCAGGAGAGCCGGACCGGGCCCAGCCGACACCGGAGGAAAGCCCGGGGTTCCGCTCATGTCCAGCTCCGCATCGGTCTcctgctgcagctcctcctgCCTCTCTATGGACACGATTGCTACTGCAGCCCTTATTCCGTCGGTCCAGTGGGGGCCTCCGAGGCAGACGACCCGGGCTCCCAGCTCTCAGGGCGGCTGGACACACAGCTGGGGCGACGCTGCGGGAAGACACAGCTGGACACGCAACATGGTGCTCACCCGAGACGCGTCTGTGTCCATCGCAAGAGTGTCCACCTGACGAGCGGCACCCCAACCAGGGACGGGCGACCAGAGAGGAGGTGCTGCCCGCCCGCTCCCCCCCGTGGCCTGTACGGGCACTGCATCCGGTGC
>TU55119
GCAGGTTTGTGCGTCTGCATGTTGTCATGCATGTGAACTCAGACAAGAATAAAAACGGACTTGCTGCTCCATCTAGTGGACATTGCGCGTAATTGTTGCTCGGCAGCTGTGTCCAGATGTTCCGATTCTTTCACCAACATTACGCGAAATATCAACATTGGAATAGTATCCACCACccccaacaacaaaacatgtacaattgtataaaataacatcaattCACAGTGCAAAAGAGGGCTTGGTACCTGAGGTCGAGACCGAGCGACGAGCCAGATGTGCTCCAGCTGTGTCTGATTGGCCCAGGGCGGCTGACGCGCTGTTTaacacccccgccccccacgGCGGGCTGAAGTCCAGAGCCCGGACAGCGGGCAGAGACGGCAGAACCGGAGATGAAGAAGTTCGTGGTGCTCGGTTTGTGCCTGGTCTTACTGACCGTCCTCACAGaTGCCTCTCCAATTGTGAAGGAGAAGTTCGCAAAACAGCTCCTCAGGACCAAGAGGCAGGAGAGACCGAGGAAGGCGGGCTTTCCAGATGAGCCGTTGAGGGAGCACAATCTGTACATGCAGAGACTGGACCAGATCGCCCAGGAGACCAACATGGAGCACTGGCTCAACCCCCACTGCTTCCCCCGCTGCAACCGAAACTA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013405 True 874 mRNA 0.62 6 30286642 30290488
TU55119 False 649 TUCP 0.54 3 30288292 30290867

Neighbor

gene id symbol gene type direction distance location
AMCG00013392 NA coding downstream 122164 30155262 ~ 30164478 (-)
AMCG00013393 rhot1a,LOC108430568,LOC107729179 coding downstream 133284 30126697 ~ 30153358 (-)
AMCG00013391 NA coding downstream 160141 30117800 ~ 30126501 (-)
AMCG00013389 rhbdl3 coding downstream 185938 30091862 ~ 30100704 (-)
AMCG00013385 NA coding downstream 283760 29991300 ~ 30002882 (-)
AMCG00013404 NA coding upstream 31398 30322265 ~ 30332700 (-)
AMCG00013403 NA coding upstream 42581 30333448 ~ 30340461 (-)
AMCG00013410 NA coding upstream 139797 30430664 ~ 30436741 (-)
AMCG00013419 NA coding upstream 217084 30507951 ~ 30521671 (-)
AMCG00013420 NA coding upstream 233040 30523907 ~ 30533879 (-)
G44086 NA non-coding downstream 196495 30088803 ~ 30090147 (-)
G43919 NA non-coding downstream 787069 29497710 ~ 29499573 (-)
G43831 NA non-coding downstream 1165323 29119373 ~ 29121319 (-)
G43834 znf207,LOC107753267 non-coding downstream 1168681 29115222 ~ 29117961 (-)
G43725 NA non-coding downstream 1547869 28737957 ~ 28738773 (-)
G44230 NA non-coding upstream 16159 30307026 ~ 30310766 (-)
G44213 NA non-coding upstream 93819 30384686 ~ 30455606 (-)
G44261 NA non-coding upstream 243104 30533971 ~ 30539317 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding upstream 249446 30540313 ~ 30562691 (-)
G44264 NA non-coding upstream 260522 30551389 ~ 30552050 (-)
AMCG00013390 NA other downstream 102218 30165817 ~ 30184424 (-)
AMCG00013386 NA other downstream 203201 30080614 ~ 30083441 (-)
AMCG00013384 NA other downstream 225008 30040205 ~ 30061634 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other downstream 258412 29926383 ~ 30028230 (-)
G43869 NA other downstream 1032326 29253396 ~ 29254316 (-)
G44243 NA other upstream 109020 30399887 ~ 30423025 (-)
AMCG00013409 LOC107590438 other upstream 164860 30455727 ~ 30464091 (-)
AMCG00013412 NA other upstream 177763 30468630 ~ 30482326 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other upstream 192438 30483305 ~ 30486331 (-)
AMCG00013425 NA other upstream 439420 30730287 ~ 30742643 (-)

Expression


Co-expression Network