AMCG00013408


Basic Information

Item Value
gene id AMCG00013408
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30425007 ~ 30430649 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013408
ATGCGGTGCTTCGACACGGTCAGGCCCGGGGCGGCTCGCTGGAAACGCGTCCATCCTGTTTCCAAGCGTGGAGACCCTGAGCAGCGTCTGCGCAGCCGAGCGCTTCACTCCGCCGCGCAGTACCGCCGCTGCCGGCGGGGAGGCAGTAAAACGCAGCTGTTGATTCAGGGCCGGAGACACCAGGGGGCACCGGGGGACAATGCCAGACGGCAGCACCAATCGCACTGGCTCTGTCCGCTAGCCGAGCCCTTCCGCTCTGACGCCCCTCCTCCGCCGGTCGCCGCAGCTGTGAGAGCCGGAGCCAGCGGCGCGTCCAGGACACCGGGCCGCAACCAGGGCGTGCATGCCGGCCAGCCCGCCGTCCAGTGCCCTGCAGTGCCAGTACCGGCTGTGGTGGACGCTGTCTGGGCGGTGTGGAGCATCGGGGCCTCCATCTACGACTACCTGCACACCAGCGCAATGGAGGAGCGGATCAACGCCCTGGAGACGGTCATCACAGTGCACCAGTGTGTCATTGGAGCGCTGTCCGCCAGCCTCATCATGCTGGTCACCTACATCCTGCTGAGGAAGCACTGA
>TU55072
CGGTCGCCGCAGCTGTGAGAGCCGGAGCCAGCGGCGCGTCCAGGACACCGGGCCGCAACCAGGGCGTGCATGCCGGCCAGCCCGCCGTCCAGTGCCCTGCAGTGCCAGTACCGGGCGGGCAGTGCAGAAGGAGTCCCTGTGTGAGGAGGCAGGCGTCCCCCGGTAAATGGTGTCTCCCACCATGAAGGCTGTGGTGGACGCTGTCTGGGCGGTGTGGAGCATCGGGGCCTCCATCTACGACTACCTGCACACCAGCGCAATGGAGGAGCGGATCAACGCCCTGGAGACGGTCATCACAGTGCACCAGTGTGTCATTGGAGCGCTGTCCGCCAGCCTCATCATGCTGGTCACCTACATCCTGCTGAGGAAGCACTGACCCATCCCTTCCGCGCACCGCTCGGACCCTGACCACTGCCTTAACCGCCACAGCCCGCCGCGCCGCAATGCCGGACCGTCTGCCGGGGATGCCTGTGCCGCTGCCATCTGCTGCTGGAGTGACTGCTGTGATCGCAGCACACAGCTCGGCTGAGAGCGAGCCGGGCTTCACCACTCCGCCATCTTTAACTCGCGGTGATCAGAACCTGTCAGAACAGGCCCGATAGAACCAGAGCTGTGGAACAAAGGGAAGCAGATGTGAACCACTGGCTGCGTGGATGGATGAGTGGCTGCATGGGGACACAGCGCTGTGCCGCACTGTTTCCTGCAGAGTTCAGCTGGTGCAGATAGTGAGGGATGTTCAGTCCATTGACATCTATGAAGTGACCTTACGCCCTGCCGGAGGCCGTGGCCAATTCCTATTGGTTGACAGAATGCTAGTTACCTTGGGGGGAGTTcctggaaacttttttttactgtttttggCCTCCTTTATGATTGAGTGGTTGGCGGGATGGTGTGGTGATCTTGCTGAGATGGGTGGCTTGAGCAGGTGAGCAGTTGGGCTGCGGATGTGGGGTGGGGGCTTCATCTCAGCTGTGCGGGAGTTGGTCACAGCTGAGCtgagcttttttatttaaatatgtgagaTATTGTAGGAGAGGTTACTCATCCTCCCCCTTCACCCCCCAGTCCTCCAGCGACTCCACAGCAGCTGGATGACAGAAATTCAGAGGCCGGGTGGGGGGCAGCTCCTGGGACTTTTAGCCCACAGCAGACTCGTCCTAATTTCAGAGTGTGCTAGAAATTAATCTGCCTCACgtttattaatataatcataCTAATAGTTCGGATGAGTATCCGAGCCCCTCCTGCCCCAGACACGCACAGGGCCACAGGGCGGTGCTGCTCGGCTGCGTTGCGCTCCAGCACAGCTGCGGTTCTGACCCGTTTCTTGTGTTCTAGCAGCAAGGGACAATGAAGTGGCAGGAAAaaggaattaataaaaaaacttttaacatttattgCAAGTCTATTTGTGTTGCTGCTCTTGTGAATTGTCCCGTATGAATGGCAGTGTGCTGGCGGGGCCCCAGGCCTGTTCGCCCCTCACCAGGCTGTGGCTGAGACTCGGGTCTCCACCTACAGCCCGGTTCTGCGCTGCGACACCGACGGAGCCCAGTCTCGATCGCAAGGAGGTGGAGGAATGGAAGGATTGTGTAATGGTGACATGCAGGTGGTTTATAAagcattattttgagtaattttgCTACGATGTTGCAGTTAAGGTTACATTTTGGGATGGGGTTATGGGTCCCACCTCAACTTAGGCTTTCATTAAAGATGGGGTTGCTTTTCAGCGGTGTTGACTGTTTGTGGTGCGGCTGTGAAGGGGAACCAGCTTCAATGTTGCTGTTGGGCTCAGGCTATGGGCTCAGGTACCCTCCTGATGTAACCGTTGTTTACAGTGGCAGCTTCatgaagtaattaaaataaaataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013408 False 576 mRNA 0.67 4 30425007 30429147
TU55072 True 1878 lncRNA 0.56 2 30426624 30430649

Neighbor

gene id symbol gene type direction distance location
AMCG00013406 rab11fip4a,LOC107654480,LOC108274243,LOC106564646,LOC107688103 coding upstream 34531 30365872 ~ 30390476 (+)
AMCG00013401 NA coding upstream 73172 30345321 ~ 30351835 (+)
AMCG00013402 NA coding upstream 108588 30311722 ~ 30316419 (+)
AMCG00013400 LOC108248236 coding upstream 114216 30302820 ~ 30310791 (+)
AMCG00013395 NA coding upstream 141451 30279191 ~ 30283556 (+)
AMCG00013407 NA coding downstream 9025 30439674 ~ 30452954 (+)
AMCG00013418 NA coding downstream 95206 30525855 ~ 30534025 (+)
AMCG00013415 arhgdia,LOC107654583 coding downstream 106154 30536803 ~ 30541363 (+)
AMCG00013414 p4hb,LOC107591928 coding downstream 116994 30547643 ~ 30557225 (+)
AMCG00013413 ppp1r27,LOC107087444,LOC101068817,LOC107748880,LOC107558871,LOC108242930,LOC101162449 coding downstream 129832 30560481 ~ 30562562 (+)
G43895 NA non-coding upstream 978309 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 1222286 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 1246741 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 1266514 29156699 ~ 29158493 (+)
G43810 NA non-coding upstream 1273673 29149978 ~ 29151334 (+)
G44182 NA non-coding downstream 25023 30455672 ~ 30457671 (+)
G44306 NA non-coding downstream 303887 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 306160 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 341732 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 343533 30774182 ~ 30774548 (+)
AMCG00013399 NA other upstream 81002 30339802 ~ 30344005 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other upstream 195986 30218910 ~ 30229021 (+)
AMCG00013388 NA other upstream 334890 30083644 ~ 30090117 (+)
AMCG00013382 NA other upstream 350259 30063380 ~ 30074748 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other upstream 496310 29885762 ~ 29928697 (+)
AMCG00013416 alyref,LOC106606979 other downstream 60178 30490827 ~ 30496613 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other downstream 132591 30563240 ~ 30568219 (+)
G44325 NA other downstream 346202 30776851 ~ 30777169 (+)
AMCG00013468 NA other downstream 1470881 31901530 ~ 31911801 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other downstream 1842619 32273268 ~ 32284951 (+)

Expression


Co-expression Network