AMCG00013409 (LOC107590438)


Basic Information

Item Value
gene id AMCG00013409
gene name LOC107590438
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30455727 ~ 30464091 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013409
ATGTCGATAGAGGCGGACGTGTTGCTGCAGGAGGCGAAGGAGAGCATCGAGGCGGCGCAGAACTACCGGAGCGAACTCCAACAGCGCCTTCAGGGGCTTACACAGGCGCGAAAACAGgTGCGTGGCAGTGCTCTACAGACGCGCGAGGTCCTCAGGCAGCACTTCCAAGAGCTGCAGGCATCTCTGGGCCGCCTGCTGGATGAGCGCCTGGCCGCCCTACTGCTCGAGGTGGACGCCATTGAGACGGACAGCGTGCGGCCGCTGGACGACTGCCAGAAACTCATCGAGCAAGGAGTGAGCGCGGCTGAGGAGCTGCTGAGGGAGGgTGAGGCAGCTCTGCGCTGTGGCGTCAATGAGAAGGATGACAAGCTGGGCAGCTTCACCAAGAAGGCCCTGCAGATCCAGCTGGACAGTCTGCCCGAGGTGCCCTCCCTGGTGGACGTGCCTTGCCTGTCAGCACAGCTGGACGACTCCCTGCTGCCGGGGGTGCGCGACCGCATCTTCAGCCATGGCAGCGTGGCATCCCACCCCCCCGTGCAAATCGATGAGCTAgTGGACGAGGACTTCGTGGTGCAGGACTACCGGCTGCAGTACCGGAGGGGCGCGCTGGGGCAGTATGAGGACGCCTACGTGGGCCGGGACACCGAGTCCATCGTGCTGCAGCTTGACCCGCACACCGAGTACCTGTTCCGCGTGTGCGCCAGGGGGGAAGGCCGCCGCGAGTGGAGCCCCTGGAGCGTCCCGCAGCCGGCCTTCACCACGCTGGCGCCGCACGAGTGGCTGGCGGGCAGCGAGGGCTACAGTCTGAGCAGCCGGAGGAACATCGCGCTGCGCAACGACAGCCTGGCAGCGCGGGGGGGCGTGCTGTACTCCAGTGCCCCCACGTACTTCTGCGGACAGACCCTCACCTTCCGGGTGGTGAGCGCAGGGCAGCCGGAGCACAGGGACAGCGTGGGTGTGTGCGTGGACTGTGACGCCGGGGTGGAGTCGCTGCAGAGGGACCAGGCGGTCTGCATCTCCACCAGCGGTGCCGTGTATGTCAATGGCAAGGAGATGACCAACCAGCTGCCCGCGGTGTCGGTGGGCTCCTCCGTGACCTTTGACATGGAAGTGGTTGGCCTGTTTCCTGTGAACAACAACAATGTCAGCGAGGGGGGCGGTGGCTTCAAGCTGAGGGTGACGATTGGCTCAGGGAACAGGGAAGTGGTGTTCGATTGGCTGCTGGATCAGAGCGTGGACAGCCTGTTCTTTGGCTGCTCCTTCACTTACCCAGGCTGGAAGGTGCTGGTTTTCTGA
>TU55165
TCAGAACTCCAGTCAGTCTCCCaacatctctctccctctctcctccaggTGGACGAGGACTTCGTGGTGCAGGACTACCGGCTGCAGTACCGGAGGGGCGCGCTGGGGCAGTATGAGGACGCCTACGTGGGCCGGGACACCGAGTCCATCGTGCTGCAGCTTGACCCGCACACCGAGTACCTGTTCCGCGTGTGCGCCAGGGGGGAAGGCCGCCGCGAGTGGAGCCCCTGGAGCGTCCCGCAGCCGGCCTTCACCACGCTGGCGCCGCACGAGTGGCTGGCGGGCAGCGAGGGCTACAGTCTGAGCAGCCGGAGGAACATCGCGCTGCGCAACGACAGCCTGGCAGCGCGGGGGGGCGTGCTGTACTCCAGTGCCCCCACGTACTTCTGCGGACAGACCCTCACCTTCCGGGTGGTGAGCGCAGGGCAGCCGGAGCACAGGGACAGCGTGGGTGTGTGCGTGGACTGTGACGCCGGGGTGGAGTCGCTGCAGAGGGACCAGGCGGTCTGCATCTCCACCAGCGGTGCCGTGTATGTCAATGGCAAGGAGATGACCAACCAGCTGCCCGCGGTGTCGGTGGGCTCCTCCGTGACCTTTGACATGGAAGTGGTTGGCCTGTTTCCTGTGAACAACAACAATGTCAGCGAGGGGGGCGGTGGCTTCAAGCTGAGGGTGACGATTGGCTCAGGGAACAGGGAAGTGGTGTTCGATTGGCTGCTGGATCAGAGCGTGGACAGCCTGTTCTTTGGCTGCTCCTTCACTTACCCAGGCTGGAAGGTGCTGGTTTTCTGACCCAGCCCGGCCCGCAGGGTGCGACCCCTTGAATTTAGAGGTGCGGGCAGCGTCTTGGAACCTGTCCACAACACAACACGAACTGATGCTGTCCGAGGAAGAGACCCCTTTAGAGAGCTAGCATTGTTTGTTAAATTGAAGTTGTGAGCCAAGATGCCAGCCTGCCCCATTTCCTGCAGGGGAATTCAAAGGGATTGGTGGGTCAGAGACAGGAAAGCTTGTTACATGTGCtaattaaacataattcatccaattaagcaattaagagccTGGCTAGATTGAGGAACAGAAGGCTGTGCTGCAGTCTCCTCTCACAGGGTAactgcctttttatttattttagtattttgcaGATTCCTAACAACagtattttctatatatatatatatatatatatatataatcaattgcaataatatatatatatatatatatatatgagagagagagagagagagggatgctTATCTTAGAATGAAGTGCCTTAGaacatttaatatttgacttttcccctcctcttcctcctccagcatatagtattttcagttttttttaaatatgtatttgcagtTTATAAATTGTCTTTTTATAACTTTAGTTTGATAGAGATGTGTGAATGTGAACGGATTAAAAGTGTAGCGAAGCAGAGCGGAGCTGCTTTAGTCTGGATGTAAAGGTGATTGTGGGCCAAGCTCTCGCCTCATGTCTGAACTGTAGAGAAATGTCCTCTGTCCGATGGTTCAATCCCAGTGAAGCCGGGACAGATGAGTGGCTCCGGTGGACCATCTCCATCCACACCCACTCTTTAGAGACGAGGGGCCAGGGGGTTGGCTTTGCTTCAGAAGTACGGCAGCGGCTGCTCAGTACAGCCAGTTCTGTCCCCCAGGTCGATCATGAGCATCACCTTGCTGAAGTATTTCAGAAACTCGGGAGCACTCCTCAGTTGGACTTTCCATTCCCTCCCCGGCGCTCTGCTGCAGCACGGGCAGCTCTCTCCCTGCAGGCCAGAGCCGTCTGTGGGCCTCACTGCACACGCAGCGCCAGACTTTACAATGGAAGAGTCCTTTATCAACCATAAGTCTCCTCACTCCCGACAGCGgccagattttttttgttttttgtaatgaacCTCATTGTCTCACATGTGGGGGGTCAGATTACACTTAATCTTAGCTGCTATAgagtgcaaacacacacacacagctattaAACCACAGTGGGATCAGGGGACGGATTAGAAACAACATCTCCTCCCCCTCACACACCTTGTGAAACAGAAGCCCCAGAGGTGAGGGTAGTTTATAGAGCAGGGCAGCcttaacacacaaacataagGCATAACTGGAATCTTGAACCAGTGGGACAGTGTTGTGTATCAGTGAGGCCTGAATGTGTGAATGAACAGgtactttttttattcttccaggTTGTTAAATATTAAGACAAGCTTCCAGTCCCAGTTGCTTCTGCTGCCCCTCCTGCCTCAGCTGTAGTCACCCCGTGTGCTCAGCACCTTTACTGAAAGCTGTGAAAGCGCAGTTGCATTGAGCTTGGGGGTGAGCCCTGTTCTTACCTCAGTATTGTGGCGGCGCTGCCTGGCCTGGTTCTGCTCGCTGTTTGCATGCGCTGTGCCGCAGGCCACGGTCACGGTCACTGAATAAAGTCCATGTTTTGCA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013409 False 1296 mRNA 0.65 8 30457403 30464091
TU55165 True 2468 TUCP 0.52 4 30455727 30459331

Neighbor

gene id symbol gene type direction distance location
AMCG00013410 NA coding downstream 18986 30430664 ~ 30436741 (-)
AMCG00013403 NA coding downstream 115266 30333448 ~ 30340461 (-)
AMCG00013404 NA coding downstream 123027 30322265 ~ 30332700 (-)
AMCG00013392 NA coding downstream 291249 30155262 ~ 30164478 (-)
AMCG00013393 rhot1a,LOC108430568,LOC107729179 coding downstream 302369 30126697 ~ 30153358 (-)
AMCG00013419 NA coding upstream 43860 30507951 ~ 30521671 (-)
AMCG00013420 NA coding upstream 59816 30523907 ~ 30533879 (-)
AMCG00013421 NA coding upstream 159885 30623976 ~ 30635826 (-)
AMCG00013430 LOC104954087 coding upstream 228984 30693075 ~ 30697703 (-)
AMCG00013432 NA coding upstream 234149 30698240 ~ 30700665 (-)
G44213 NA non-coding downstream 121 30384686 ~ 30455606 (-)
G44230 NA non-coding downstream 144961 30307026 ~ 30310766 (-)
G44086 NA non-coding downstream 365580 30088803 ~ 30090147 (-)
G43919 NA non-coding downstream 956154 29497710 ~ 29499573 (-)
G43831 NA non-coding downstream 1334408 29119373 ~ 29121319 (-)
G44261 NA non-coding upstream 69880 30533971 ~ 30539317 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding upstream 76222 30540313 ~ 30562691 (-)
G44264 NA non-coding upstream 87298 30551389 ~ 30552050 (-)
G44259 p4hb,LOC107591928 non-coding upstream 89690 30553781 ~ 30599051 (-)
G44330 NA non-coding upstream 308451 30772542 ~ 30774110 (-)
G44243 NA other downstream 32702 30399887 ~ 30423025 (-)
AMCG00013405 NA other downstream 164860 30286642 ~ 30290867 (-)
AMCG00013390 NA other downstream 271303 30165817 ~ 30184424 (-)
AMCG00013386 NA other downstream 372286 30080614 ~ 30083441 (-)
AMCG00013384 NA other downstream 394093 30040205 ~ 30061634 (-)
AMCG00013412 NA other upstream 4539 30468630 ~ 30482326 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other upstream 19214 30483305 ~ 30486331 (-)
AMCG00013425 NA other upstream 266196 30730287 ~ 30742643 (-)
G44719 NA other upstream 2101669 32565760 ~ 32567952 (-)
AMCG00013488 NA other upstream 2158062 32622153 ~ 32627904 (-)

Expression


Co-expression Network