AMCG00013413 (ppp1r27,LOC107087444,LOC101068817,LOC107748880,LOC107558871,LOC108242930,LOC101162449)


Basic Information

Item Value
gene id AMCG00013413
gene name ppp1r27,LOC107087444,LOC101068817,LOC107748880,LOC107558871,LOC108242930,LOC101162449
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30560481 ~ 30562562 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013413
AAACAGACAAGGACCGTAGACACTtcaacagacagagagaggacagagacatTGGACAGAGCAACTTCGGGAAGGACTTTTTTCAAAGAAGAAGAGCAGGAACcagaattaaacacaattacaagagagtgggagagaggcgATACTGAGGCTCGAAGGCTTGCACTCTCACTTGTGTTCTGGATTTACCCGTGAGGAGGCAGAGCAGCCCGGAGTGGGGCAGGAAGGATTACAGTTGTCTGATTGGGTCTCTTTGGAGTGGGCCAACCGTCCCCAATATCTCGTTTATCGGGATGAAATATCATTACCAGTGTCCGGTGTCGCGGTACAGCCGGTCGTTGCCGGTCAAGCCTGTGAGGACCGTACACTTCCCCAATGATGTTGTGTTCCAGGACCACATCCGACAGGGCGACCTGGAGCAGGTGGGCCGCTTCATCCGGGCCAGGAAGGTTCGGCTGGACACCATCTACCACTCTGGCATGGCGGCGCTGCACGAGGCGGTGCTGACAGGGAACCTGGAATGCGTGAAGCTGCTGGTGAAGTACGGTGCCGACATCCACCAGAGGGACGAGGATGGCTGGACACCCCTACACATGGCCTGCAGCGACGGATACCCACACATCGCCCGGTACCTGCTCTCTCTGGGCGCCAGCATGGAGGCAGTGAACGAGGAAGGCGAGACACCATCTGACCTCATTGACCCCGACTGCAAGGAGCTGGTCACCCTCTTCAAAGCTGTGGGCGTGGCCTGAACTGCTTGCTCTGATTGGGCTTGTCTGCTCCTTATCAGCCTTCTTTTGCCACCGTGACGGGATGCTACAGATTGTTCGTCCTTTCACAGTGCCCTCCCACCCTGCACCCCACTGGAGGCTGAAAGCGGGGGTGGGTTGGCCGTCTCCCATTGGTTGCCATGGGGGAGAGGCGGGACACCTGAAACTGCTCTGTGAAGGGCTGGTTCGGCCGCCAGTCGCGGCATGTGCTTCTTACTGGCTGATCTCAGCcgcacagcaaaaacaaaaacaaccgaAATACTGTtgagtgctttttatttttataccagACATTCTGTGTGACTTTTAAAGGAGTGTGGTCGAGTGTTGCCGTGCTGAGGTGCTGCTCAGTGTGGCTGAGTGTAAAAGCCCGTTTCTGCTGAACTGACACGGCTGTCACTGCAGGGAGACAGTCCCGAGGCGCTGCCATGACCACCCTGCCAAACTGCGGTTGTGGGCAGCTGTGACTGAACCGAATCCACAGACGCTTCGTGGCTCCAGCTCTCACTGCTTAATCCACTCAGCACTAGTGGCATACTGCatgtaatacacacactgtgcacatggtatacacactgtatacacactTAACAtgatacacacactatacacacttgAATATACACCATACACACCCTGCACTCTTACTGACTATGCTACCTGTGTACGGCACTTGCCTGAACTGCTACCAGTCTTACCCTATGGTTACttaaataaagtttttattattatta

Function

symbol description
ppp1r27 Enables phosphatase binding activity. Predicted to be involved in negative regulation of catalytic activity.

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 27-like

GO: NA

KEGG:

id description
K17566 PPP1R27; protein phosphatase 1 regulatory subunit 27

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013413 True 1504 mRNA 0.54 3 30560481 30562562

Neighbor

gene id symbol gene type direction distance location
AMCG00013414 p4hb,LOC107591928 coding upstream 3256 30547643 ~ 30557225 (+)
AMCG00013415 arhgdia,LOC107654583 coding upstream 19118 30536803 ~ 30541363 (+)
AMCG00013418 NA coding upstream 26456 30525855 ~ 30534025 (+)
AMCG00013407 NA coding upstream 107527 30439674 ~ 30452954 (+)
AMCG00013406 rab11fip4a,LOC107654480,LOC108274243,LOC106564646,LOC107688103 coding upstream 170005 30365872 ~ 30390476 (+)
AMCG00013424 NA coding downstream 145223 30707785 ~ 30711079 (+)
AMCG00013423 NA coding downstream 164523 30727085 ~ 30729235 (+)
AMCG00013422 NA coding downstream 207701 30770263 ~ 30772373 (+)
AMCG00013437 NA coding downstream 297162 30859724 ~ 30871739 (+)
AMCG00013438 NA coding downstream 330870 30893432 ~ 30895656 (+)
G44182 NA non-coding upstream 102810 30455672 ~ 30457671 (+)
G43895 NA non-coding upstream 1113783 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 1357760 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 1382215 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 1401988 29156699 ~ 29158493 (+)
G44306 NA non-coding downstream 171974 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 174247 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 209819 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 211620 30774182 ~ 30774548 (+)
G44379 NA non-coding downstream 360184 30922746 ~ 30934437 (+)
AMCG00013416 alyref,LOC106606979 other upstream 63868 30490827 ~ 30496613 (+)
AMCG00013408 NA other upstream 129832 30425007 ~ 30430649 (+)
AMCG00013399 NA other upstream 216476 30339802 ~ 30344005 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other upstream 331460 30218910 ~ 30229021 (+)
AMCG00013388 NA other upstream 470364 30083644 ~ 30090117 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other downstream 678 30563240 ~ 30568219 (+)
G44325 NA other downstream 214289 30776851 ~ 30777169 (+)
AMCG00013468 NA other downstream 1338968 31901530 ~ 31911801 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other downstream 1710706 32273268 ~ 32284951 (+)
AMCG00013477 ppp1r37 other downstream 1831256 32393818 ~ 32400452 (+)

Expression


Co-expression Network