AMCG00013414 (p4hb,LOC107591928)


Basic Information

Item Value
gene id AMCG00013414
gene name p4hb,LOC107591928
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30547643 ~ 30557225 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013414
CGCCTGCGCAGTGCGGCCTCGCTCTCTGCTTCCTACGCTCCGTGCCACGTTAGTAGCGGCAGAGACGAAACCCAGCGGCTGCCCTGCGAAGACACGAAGACCGACCGACACACCCGGGTCTCGCTGcccctcagacacacacacgcacacccgcCCGGACGGAGCTGCTCTCCCGTGTCCTCCCCCCGCTTCCCACAAAGAGCCATGAAGATCCAGCTGCTGCTCGTATTGTGCGCCCTGTCCGCCGCCAGCCGGGCCGACATCACCGAGGAGGAGGACGTGCTGGTGCTGAAGAAGACCAACTTCGAGGAGGCGCTGCTGGCGCACCCCAACATCCTGGTGGAGTTCTATGCTCCCTGGTGCGGGCACTGCAAGGCCCTGGCCCCGGAGTATGCCAAGGCCGCCGGCATGCTGAAGGCCGAGGGCTCCGAGATCCGCCTGGGCAAAGTGGACGCCACGGAGGAGACCGAGCTGGCGCAGGAGTTTGGGGTGCGGGGGTACCCCACCATCAAGTTCTTCAAGGGCGGAGAGAAGAGCTCGCCCAAGGAGTACTCGGCTGGGCGTCAGGCTGATGACATCGTATCCTGGTTGAAGAAGCGCACTGGCCCTGCTGCCGCCACCCTGACCGAGGCCACCCAGGCCGAGGCGCTTGTCACCGACAATGAGGTTGCCGTCATCGGCTTCTTCAAGgaTGTGGTGTCGGAAGATGCCAAAACCTTCCTGAAGGCTGCGGAGGCTGTGGACGATGTCCCGTTCGGCATCACCTCCTCCGACGAGCTCTTCTCCAAGTACGAGGTCACCCATGACTCCGTGGTGCTGTTTAAGAAGTTTGACGAGGGACGCAATGCCTTCGAGGGAGAGGTCAGCAAGGATGGCCTCGTGTCCTTCGTCAAGGCCAACCAGCTGCCCCTGGTCATCGAGTTCACAGAGCAGACTGCCCCGAAAATCTTCGGAGGGGAGATAAAGTCCCACATCCTGCTGTTCGTCCCCAAAGCCGCCTCAGACTTCAAAGTAAAGATGGACAATTTCAAGAAGGCGGCAGAGGACTTCAAGGGCAAGATCCTCTTCATCTTCATCGACAGCGAGCTGGACGACAACCAGCGCATCCTGGAGTTCTTCGGGCTGAAGAAGGAGGAGTGCCCTGCTGTGCGGCTCATCACTCTGGAGGATGAGATGACCAAGTACAAGCCTGACATCAATGAGATTACGTCTGAGAACATCGCCGCCTTCTGCACGCGCTTCCTGGATGGCAAGCTGAAGCCTCACCTCATGAGCCAGGACATCCCCGAGGACTGGGACAAGAACCCGGTGCATGTTCTGGTTGGGAAGAACTTCGAGGAGGTAGTCTTCGATCCCAAAAAGAACGTCTTCGTGGAGTTCTATGCCCCCTGGTGTGGACACTGCAAGCAGCTGGCCCCCATCTGGGACAAGCTGGGTGAGAAGTACAAGGACAGCGACAGCATCATTGTGGCCAAGATGGACTCCACGGCCAACGAGATCGAGGCCGTCAAGGTGCACAGCTTCCCCACGCTCAAGTTCTTCCCCGCGGGAGACGAGCGCAAGGTGATCGATTATAACGGTGAGAGGACGCTGGAGGGCTTCTCGAAGTTCCTGGAGAGTGGTGGCAAGGATGGAGGGGCGCCAGCCGGTGATGAGGACGATCTGCTGCCCCAGCCCTGTTGCTCTGTGCCCCTCCCGATTTACACCCCGGATGGTGGGGGCTGTGTGGAGCTGCTGTCTGTGCAGAAACTCTTCTGGCATGTCTTGCGGAGATCGGGTTGCCTCATGACTGAACCCGTAGATCGAGGTGAGGACCTGGAGGACGTCGAGGAGGGAGACCTGACGGAGGACGAGGGCGAGGACTCTGACTCTGATGGGGAGCACGCCGGCCACGACGAGTTCTAGGCCCCGTGCCGCCGCTGAGCCCTTGTCACGCCAACACTAACCTTTTCAGAACCCGACCTGCTCAAAACCGCCCGCGCCACAGGACTGGACCAGCCAGCCATccctcaccccacccccaccgGCACTGAACCAAACCAACGACTGCCGAACACGGAGTCGGAAAAGACTGCGATTATCACTTTTATTTAACCCCGCGTCACCTCTCCCCTCAACCCTTGTAGGACCGTCTTGGGTGCAAGTGTACATTTTAACCCCATTGCGCCTGGGCGGggacttttctttcctttactGGCTCCAATTCAATGCGGGGGAGGGAGATGTACTGCCCTGTTCCTGTTCCGGCAGAATATTTCCCTTTTAACACATTGCCCTTTTTCCAGTTAAAGCTCACTTCTAAAGGGGTCCACCTGTGGGACCAGCTCGGGGGGGCTGACCCCTTCACTCGCCACAGCAGGCTGGCCCCCCGTCTCCAAGGCCAGCGGTTGTCGTTTGAAACCCAGCCTCGTTTCCATCACTGTTTTGGATGGACAGTTCTGTTCTGGGGTGGGGAGCCATACTGTATCTGTACAAAAACTTGGCAAACCCCAACCCCCTTCCCAGTTATCTCGACAGCCTGCCtgctgatttatatatatatatatttttttttatatataaatatagatttaaaCTTGGGctacagttttttattttgtattgacttCAGTTAACCCCTTCCCTGCAGTGTTCAGATTTTAAGTTGTGCTCCTCCGGCCGAGTCTGTCCACCGTGTCCCGCAGCCCCTCTCCCCCCCTGCCCAGCGGCACGGTGTCAGGCCGAACTCCTTGGTTACCGACAGACGATTATTGTAACTCCGAGGATGCTTCCCCTGATCGACACACTCCTCCTACCTCCCTGGGGGACTGGGGCTTGGGTGTACCCCTGTTTTGCGTGACGGTGGGGggctgtgcttgtgtgtgcgtgtgtgggggcggggggtgggtgggtgtgtgaaTGTAATGGAAGActggaggaaggaggagagagggaaggggggaggTAAAGGGTTTTGAATCTTAGACTAAATCATTCCATCACACTAAATCTGAGTGGAAACAACTGGTGGCCaaataaaagatttaaaacCA

Function

symbol description
p4hb Predicted to enable protein disulfide isomerase activity. Predicted to be involved in protein folding and response to endoplasmic reticulum stress. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in Cole-Carpenter syndrome. Orthologous to several human genes including P4HB (prolyl 4-hydroxylase subunit beta).

NR:

description
PREDICTED: protein disulfide-isomerase

GO: NA

KEGG:

id description
K09580 PDIA1, P4HB; protein disulfide-isomerase A1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013414 True 3032 mRNA 0.58 13 30547643 30557225

Neighbor

gene id symbol gene type direction distance location
AMCG00013415 arhgdia,LOC107654583 coding upstream 6280 30536803 ~ 30541363 (+)
AMCG00013418 NA coding upstream 13618 30525855 ~ 30534025 (+)
AMCG00013407 NA coding upstream 94689 30439674 ~ 30452954 (+)
AMCG00013406 rab11fip4a,LOC107654480,LOC108274243,LOC106564646,LOC107688103 coding upstream 157167 30365872 ~ 30390476 (+)
AMCG00013401 NA coding upstream 195808 30345321 ~ 30351835 (+)
AMCG00013413 ppp1r27,LOC107087444,LOC101068817,LOC107748880,LOC107558871,LOC108242930,LOC101162449 coding downstream 3256 30560481 ~ 30562562 (+)
AMCG00013424 NA coding downstream 150560 30707785 ~ 30711079 (+)
AMCG00013423 NA coding downstream 169860 30727085 ~ 30729235 (+)
AMCG00013422 NA coding downstream 213038 30770263 ~ 30772373 (+)
AMCG00013437 NA coding downstream 302499 30859724 ~ 30871739 (+)
G44182 NA non-coding upstream 89972 30455672 ~ 30457671 (+)
G43895 NA non-coding upstream 1100945 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 1344922 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 1369377 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 1389150 29156699 ~ 29158493 (+)
G44306 NA non-coding downstream 177311 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 179584 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 215156 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 216957 30774182 ~ 30774548 (+)
G44379 NA non-coding downstream 365521 30922746 ~ 30934437 (+)
AMCG00013416 alyref,LOC106606979 other upstream 51030 30490827 ~ 30496613 (+)
AMCG00013408 NA other upstream 116994 30425007 ~ 30430649 (+)
AMCG00013399 NA other upstream 203638 30339802 ~ 30344005 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other upstream 318622 30218910 ~ 30229021 (+)
AMCG00013388 NA other upstream 457526 30083644 ~ 30090117 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other downstream 6015 30563240 ~ 30568219 (+)
G44325 NA other downstream 219626 30776851 ~ 30777169 (+)
AMCG00013468 NA other downstream 1344305 31901530 ~ 31911801 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other downstream 1716043 32273268 ~ 32284951 (+)
AMCG00013477 ppp1r37 other downstream 1836593 32393818 ~ 32400452 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032767 p4hb coding NC_007117.7 CM002890.2 18203464 ~ 18228358 (-)