AMCG00013415 (arhgdia,LOC107654583)


Basic Information

Item Value
gene id AMCG00013415
gene name arhgdia,LOC107654583
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30536803 ~ 30541363 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013415
ATGGcgagggaggaggaaggggggacGAGGCTGCTGACACTGACTGGCTCTCACTTGGCTGtGATGGCAGAGCAGGAGCCCACACCGGAGCAGCTGGCGGCCATCGCAGCGGAGAACgagcagggggaggggggcgtgAACTACCGCCCCCCAGCGCAGAAGAGTCTGCAAGAGATCCAGGAGCTGGACAAGGACGACGAGAGCCTGCGCAAGTACAAGGAGGCCCTGCTGGGGGCCACGCCTGTGGCGGCTGATCCCAGTGCCCCGAACGTGCAGGTGACCCGACTGACCCTGATGTGCGACACGGCCCCTCTGCCCCTAACCCTTGACCTGACAGGTGAGGTGTCGGTGCAGCGCTGCAGGGGTGTGGCACTCAGCTGCTCTCTGTCTCCGCAGGTGAACAAGGAGATCGTCTCGGGACTGAAGTACGTCCAGCAGACCTACAGGAAAGGAGTGAAGAttGACAAGTCAGACTACATGGTGGGCAGCTACGGGCCGCGGCCGGACGAGTACGAGTTCCTCACGCCGCTGGAAGAGGCGCCCAAGGGCATGCTGGCGCGCGGCACCTACAACATCAAGTCCCAGTTCACCGACGACGACAAGCACAACCACCTGTCCTGGGAGTGGAACCTCAACATTAAGAAGGACTGGAAGGATTGACACCCCTGTCCCCTGATACCCCTGAAACCCCCCTACCCAGTCTCTTTCGGCCTTTCTTTCCCCCCGTCCTCCTCCTCTCACTGCTCTGCTGTAACGGCTCCAAGGCCAGTGCGGTTTTCCTTCCAGCCAATCCCTGCTCTCTCTACCTCCCTGTCCTCAGGCTGTCCTGTGTGTCCGCCGCGCTGCCGCTGTGTCCTGAGCACAGTGTGgtggacacacagcacagactgcCTTTCCTGTCCCGCCCCCCGTCCTCCTCCCTGTCCCCGACCCCCAGAAATCAGCAGGAGCAGCGACAGGTCCCGGTGCTGCTGACCAGTCAGATTTACAGAGGTAATGGAGATATATATAAGAGCAGAGATAGAGTGAAAGTCTAAAtggaaagaggaaagaaaaaagtgtacaatccaaatttttgttttttggtttgtttatatataaaatcgaagaaaaaaaaaaaaaaaaaaaactaaaa

Function

symbol description
arhgdia Predicted to enable Rho GDP-dissociation inhibitor activity. Acts upstream of or within small GTPase mediated signal transduction. Predicted to be located in cytoplasm. Predicted to be active in cytosol and membrane. Is expressed in retinal ganglion cell layer. Used to study nephrotic syndrome. Human ortholog(s) of this gene implicated in nephrotic syndrome type 8. Orthologous to human ARHGDIA (Rho GDP dissociation inhibitor alpha).

NR:

description
Rho GDP dissociation inhibitor (GDI) alpha

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0005094 Rho GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K12462 ARHGDI, RHOGDI; Rho GDP-dissociation inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013415 True 1135 mRNA 0.58 5 30536803 30541363

Neighbor

gene id symbol gene type direction distance location
AMCG00013418 NA coding upstream 2778 30525855 ~ 30534025 (+)
AMCG00013407 NA coding upstream 83849 30439674 ~ 30452954 (+)
AMCG00013406 rab11fip4a,LOC107654480,LOC108274243,LOC106564646,LOC107688103 coding upstream 146327 30365872 ~ 30390476 (+)
AMCG00013401 NA coding upstream 184968 30345321 ~ 30351835 (+)
AMCG00013402 NA coding upstream 220384 30311722 ~ 30316419 (+)
AMCG00013414 p4hb,LOC107591928 coding downstream 6280 30547643 ~ 30557225 (+)
AMCG00013413 ppp1r27,LOC107087444,LOC101068817,LOC107748880,LOC107558871,LOC108242930,LOC101162449 coding downstream 19118 30560481 ~ 30562562 (+)
AMCG00013424 NA coding downstream 166422 30707785 ~ 30711079 (+)
AMCG00013423 NA coding downstream 185722 30727085 ~ 30729235 (+)
AMCG00013422 NA coding downstream 228900 30770263 ~ 30772373 (+)
G44182 NA non-coding upstream 79132 30455672 ~ 30457671 (+)
G43895 NA non-coding upstream 1090105 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 1334082 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 1358537 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 1378310 29156699 ~ 29158493 (+)
G44306 NA non-coding downstream 193173 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 195446 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 231018 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 232819 30774182 ~ 30774548 (+)
G44379 NA non-coding downstream 381383 30922746 ~ 30934437 (+)
AMCG00013416 alyref,LOC106606979 other upstream 40190 30490827 ~ 30496613 (+)
AMCG00013408 NA other upstream 106154 30425007 ~ 30430649 (+)
AMCG00013399 NA other upstream 192798 30339802 ~ 30344005 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other upstream 307782 30218910 ~ 30229021 (+)
AMCG00013388 NA other upstream 446686 30083644 ~ 30090117 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other downstream 21877 30563240 ~ 30568219 (+)
G44325 NA other downstream 235488 30776851 ~ 30777169 (+)
AMCG00013468 NA other downstream 1360167 31901530 ~ 31911801 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other downstream 1731905 32273268 ~ 32284951 (+)
AMCG00013477 ppp1r37 other downstream 1852455 32393818 ~ 32400452 (+)

Expression


Co-expression Network