AMCG00013416 (alyref,LOC106606979)


Basic Information

Item Value
gene id AMCG00013416
gene name alyref,LOC106606979
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30490827 ~ 30496613 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013416
ATGGTCGATAAGATGGATATGTCCTTGGACGACATCATTAAACAGAACCGGCAGCGGGGCGGAGGAGCAGGAGGGCTCCGTGGCGGGCGAGGCCGGGGCCGTGGAGGCTCGGGCGGGGGACGGGGCGCCGGGGCCGGCCGGCTCGGAGGtgcaggaggaggtggaggcGGCTTTGGTGGCCGCGGCGGAGCGTCGGGGCCTATGCGGTCTCGGCAGAACCTGAGCCGGGGCAGAAGCAGACCAACGCCGTACAGCAGGGTAGGAGAAAGAAAGATgatggggagagaggagagaaaaggaggagagaaaaTCGTGGCACCCGAAAATGCCCGGGTCTGCGGAGCTCTTGCGCTGTATTACCCTGTAGCTATCTCGGTGTGTAACCCCGGAGTATCTCTGGAGTCTGCGCCATCGAGTGGCGAGAGGGAGGCCATCGACGAGGGACCTGGTTGTATTAGAGCGGTGGATTCAGCGGCTGCTGCACCGTGGCTGCGACCCAGCGGGGAGAGACTCGTCGAGGGGAGGCCTGCCCCCCGGGTGCCCTGGCTGCGGCAGCGGGCTTTCCCGGCGGCGGACCCGGCTCTGGCGAGCAGGGTTGCGGGGGATCCGTTTCTAGAGCGGGAGGGCGGATTGGCGAGGGGCGGCGAATGGCCCAAGCAGCTTCCAGACAAGTGGCAACACGACCTGTTCGACAGTGGCTTCGGTGCCAGTGGGGGCGgtggcggtggtggtggtgctggcGTGGAGACTGGCGGGAAGCTCCTGGTCTCCAACCTTGATTTTGGGGTCTCCGATGCAGACATCCAGGAGCTGTTCGCGGAGTTCGGCACGCTGAAGAAGGCAGCAGTGCACTACGACAGGTCGGGCCGCAGCCTCGGCACTGCGGACGTGCACTTCGAGAGGAAGGCCGACGCACTCAAGGCCATGAAACAGTACAACGGAGTCCCACTGGACGGCCGGCCCATGAACATCCAGCTCGTCACATCTCAGATTGACACACAGAGACGGCCCCCCATCCAGAGtCTGAGCCGAGGTGGTGGGGGCATGAACAGGAGCCGGGTAGGCACCCTTGGCGGGGGCAGCTTCGGTGGGATGCCCCGGCGGGGGGCccgaggtggtggtggtggtggcggcgGCAGCAGGGGCCGAGGGAGGGGTGGCAGGAACACCAGTAAACAGCAGCTGTCAGCCGAGGAGCTGGATGCACAGCTGGACGCCTACAACGCCCGGATGGACACCAGCTAAGATGACTGAAGTCCCGCCGCATCAAATcgtgtttcattttttttccctcttgcCTGGGGAGGGATTGTGCACCATTGCTGCAGTGGACatgttggggagggggggctttTACACTTAGTCTCATTTTGGAAtaggttttaaacattttttatttttttttatttttttttttttgtactgaaaCTTTGGGGGGGGAGTTAAGAGTTGCCTGTGGCTGCAGGGTTTTTAAAGGGGGCTGTGGGAGGGGGGGTTGCGGTGTGTAGTTGCTTGGATACCtgggccccctccccctctccctccccttggATCATTGTAATAAACCTGCAGTGTATATTAACCTCACACCCTGTGTctgcctgctttttttttttttgtgctgtctTGGAGGTCCACTGTCCCGGGGTCCTGCAGCCGGGCTCAGGGAGGCAGCTACCTGACTCGTCCAATGTCTGTAAACTGCCCGGAGCCCAGCCAGGCTGGAGTCTCGCTGACCTGATGCACAtcagtgtttttgttaaatCCTTTTTGCGTCTGCTGTTGCAACTTTTTAATGTTcattaaatggttttattttaatgttgaaacTTCCAGATGTGCACTGGATTCATTTTCATGAAATGGTTGACTGCTGTATTGTTGGCTTGTAAAAGATTAATATTCCAGACCAAAAACTGTGGAATCTCCTCCCTAGCAGAGGAAAGCTGTTACTTTTATACAAATGAGTCACGTGATTTGCAGTGCCAATGTGTAGTGACTGTCAGCTGGTAATGTTTTAAAGGAGTGATCAGTGAAACGATTTCCTGTCTGAGGAGGGTATGTGGATCATGTGCTAAAACCTCTGCAAAAAATCTTTTACCTCTTAAAATGTAGAGAGATGGGGAAGATTTGGTGTGGGTGGTGCTTGTCTCTTGCTCTGAGAAGACATTGATGGGCTGCAGGGAAGCTGGTTACTGACCCCAACCCCTGGTCAGCAGCTCTGCCTGTGATTATGCAGCTGCAGCAGGTATCTACTGATTGAGACGTTTACAGCCAGGCTGTGTTGAAACCCTGCTGGTGTGGTCCTGGACACGGCCGCGTGGTGGGCTCGTCCTGCGCGATCAGCCACAGCGAAGCCCGTCTCTCAAGGAGTGCACCTgcggagaggaggaagaggatgaaTGTGCATCTCTAGGCTCCAGTATGGATATATTGAGCCCCTGTGTTTTGTGACCTGCTTCCCAAGGCAGCACTTTAGTTCTCCCTGCACAAGGTGGCCATGAAGTCTGCTTAATTAAcccacttattgattaatgtCACACTTCTAATCCATTACTCTTCCTATTCAGGCATGTTAACCAGCAGCAGCGGCTCCAGACCTTTATTTAAAGGTTTCTTACTGATGTGTCCTATTCAGTCATTGTCAAAAGTGAATGGAAAAGGTTTTAATGTACTAATATTTGTCCACAAAAACAGAACTGATTCCCAGAATACTttgtataaaatactgaatttataattaatgaatgcagTAACGTATTATAACATCAATCTAATGCAAGGTTGTA
>TU55098
TTGGCTTGACGTCACTGCGCCCTAATGTTTAAGTGCGTCCATTGCGCGCATCCAGCTCAGTCCGTAGCAGCAGCGTCGTTGGATAAGGATAGGGTagtgttgctgttattattatcatcgtAGTACAGGAATAGCTTTAGCCACTAAGGTCCGCTGAGGAAGATGGTCGATAAGATGGATATGTCCTTGGACGACATCATTAAACAGAACCGGCAGCGGGGCGGAGGAGCAGGAGGGCTCCGTGGCGGGCGAGGCCGGGGCCGTGGAGGCTCGGGCGGGGGACGGGGCGCCGGGGCCGGCCGGCTCGGAGGtgcaggaggaggtggaggcGGCTTTGGTGGCCGCGGCGGAGCGTCGGGGCCTATGCGGTCTCGGCAGAACCTGAGCCGGGGCAGAAGCAGACCAACGCCGTACAGCAGGGTAGGAGAAAGAAAGATgatggggagagaggagagaaaaggaggagagaaaaTCGTGGCACCCGAAAATGCCCGGGTCTGCGGAGCTCTTGCGCTGTATTACCCTGTAGCTATCTCGGTGTGTAACCCCGGAGTATCTCTGGAGTCTGCGCCATCGAGTGGCGGTAGTAATTGGGCAGTGTTCAAAttacctctttttttttcccctgtaagGGGGAGATAATCTAGTGCTTAGTTTCTTTTCCCCGACCTGTTTAACCTCCcgtttgatttttgtttttaatctgagaGCGGGCGTGTGGGCCACGGCGCCATCTTGAAACCCTGGGCTGCTAAACAAGTGCCCGGGCTAAACAAAGCGCCCCCCGCAGAAGCTTTGGGTGTAAAGTGCACCAGTCAGCCCACACAGGGAGGTCTTCCCAACCGCGAAGAGGGCCGCTGCTGTCGGCGCGGAGAGCTACCCGGCCGagcaatgaatgaatgagtccGGCTCTTTTGTCTGCAGGAGCCCGGGAGGAAACCACATGCTCCGCATTTTTTCACTGCTTCAAACGGAGCGCCAGCATGCCTAAACGGGGATGAAGGAGCCACCATAATGAACTTTTAAAGTGAGCCAGGCAATTTGAAACCAATTAATCCCCCAAAAAGAGTGAGTTCGAACGGAGGGCCCCGGTGGTGGAgtttctataaaacaaaatggcgCCGCCACAAAATggacgctctctctctcagccgaCCGCACGGGTTTCCAGACCTTCCACACGAAGCTGGTGAAGACGGATCTGCTCGGCGCCAGATGAGTGATCATTACCGCCAATACGAACTGTATAACCCCCAGACCGCGGCGCTTAACGCAACACCCGTGAGAAATAAACTTTAAAGGCGGAGAGAGGGCGGGCGGACAAGGCCGGTGGCTCTTGAGGCTGTGTCGGATTGTGCGGTCCGGAGAGAGGGAGGCCATCGACGAGGGACCTGGTTGTATTAGAGCGGTGGATTCAGCGGCTGCTGCACCGTGGCTGCGACCCAGCGGGGAGAGACTCGTCGAGGGGAGGCCTGCCCCCCGGGTGCCCTGGCTGCGGCAGCGGGCTTTCCCGGCGGCGGACCCGGCTCTGGCGAGCAGGGTTGCGGGGGATCCGTTTCTAGAGCGGGAGGGCGGATTGGCGAGGGGCGGCGAATGGGTAGGCCTCGGCTGGCAGTGCGCCCCTCAGAGTCGGGTGCTACTTTTAGTTCTTTCCCCTCAGTTTTCTCTCAAGTCAACTATTTACAATCTATTGTATCAATGTCTGCCACTGTATTGTGTGAATTACTCgatatttactatttataccGCAGTCTCAGACCAGATTAGCGCTAGTCTCAATGCTGTTAAACCCGGCTGGGGCTAATCTGGGCCTGTGAAAGTACACGCGTGTCCACTTAATGTGATTATACTGTTTTAGTCACCATATATGACGGTTAAAagcttttagatttttttttttgtaatggctGCATAGTAGAAGGCTTCCTTACCAGGAATGGCAAAGGATGTCTTGGGGGGGGTGGTATAATTTAAAGGGGTGAAGTTCTTTCTAATTTAGACTGCTTCTGTAGTTGCATGTTAAATTTAGTCCATGTCAGATGCTAGACAGACCAAAGGAAATGAGATCACCCCTCTGTAACAAGTCTTGAATGGTGGGGTAGATTGTGGAGGCTGTGCAAGGTGGACTGACTGCCCCTGCCCCTGGACCCTGTACTCTTGGACCGGGGAGGGGGCCCGCCGGACCTGGTGCCTGGCTCAGGCCTGTGCTGTCCTCGTGTCAGACAGGCGAGTGGACAGTCAGCAGGTGCGTTCTCTTTGCTCTCTTGCAGCCCAAGCAGCTTCCAGACAAGTGGCAACACGACCTGTTCGACAGTGGCTTCGGTGCCAGTGGGGGCGgtggcggtggtggtggtgctggcGTGGAGACTGGCGGGAAGCTCCTGGTCTCCAACCTTGATTTTGGGGTCTCCGATGCAGACATCCAGGAGCTGTTCGCGGAGTTCGGCACGCTGAAGAAGGCAGCAGTGCACTACGACAGGTCGGGCCGCAGCCTCGGCACTGCGGACGTGCACTTCGAGAGGAAGGCCGACGCACTCAAGGCCATGAAACAGTACAACGGAGTCCCACTGGACGGCCGGCCCATGAACATCCAGCTCGTCACATCTCAGATTGACACACAGAGACGGCCCCCCATCCAGAGtCTGAGCCGAGGTGGTGGGGGCATGAACAGGAGCCGGGTAGGCACCCTTGGCGGGGGCAGCTTCGGTGGGATGCCCCGGCGGGGGGCccgaggtggtggtggtggtggcggcgGCAGCAGGGGCCGAGGGAGGGGTGGCAGGAACACCAGTAAACAGCAGCTGTCAGCCGAGGAGCTGGATGCACAGCTGGACGCCTACAACGCCCGGATGGACACCAGCTAAGATGACTGAAGTCCCGCCGCATCAAATcgtgtttcattttttttccctcttgcCTGGGGAGGGATTGTGCACCATTGCTGCAGTGGACatgttggggagggggggctttTACACTTAGTCTCATTTTGGAAtaggttttaaacattttttatttttttttatttttttttttttgtactgaaaCTTTGGGGGGGGAGTTAAGAGTTGCCTGTGGCTGCAGGGTTTTTAAAGGGGGCTGTGGGAGGGGGGGTTGCGGTGTGTAGTTGCTTGGATACCtgggccccctccccctctccctccccttggATCATTGTAATAAACCTGCAGTGTATATTAACCTCACACCCTGTGTctgcctgctttttttttttttgtgctgtctTGGAGGTCCACTGTCCCGGGGTCCTGCAGCCGGGCTCAGGGAGGCAGCTACCTGACTCGTCCAATGTCTGTAAACTGCCCGGAGCCCAGCCAGGCTGGAGTCTCGCTGACCTGATGCACAtcagtgtttttgttaaatCCTTTTTGCGTCTGCTGTTGCAACTTTTTAATGTTcattaaatggttttattttaatgttgaaacTT

Function

symbol description
alyref Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be active in nucleus. Orthologous to human ALYREF (Aly/REF export factor).

NR:

description
PREDICTED: THO complex subunit 4-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013416 False 2789 mRNA 0.54 7 30490989 30496613
TU55098 True 3451 TUCP 0.56 5 30490827 30495656

Neighbor

gene id symbol gene type direction distance location
AMCG00013407 NA coding upstream 37873 30439674 ~ 30452954 (+)
AMCG00013406 rab11fip4a,LOC107654480,LOC108274243,LOC106564646,LOC107688103 coding upstream 100351 30365872 ~ 30390476 (+)
AMCG00013401 NA coding upstream 138992 30345321 ~ 30351835 (+)
AMCG00013402 NA coding upstream 174408 30311722 ~ 30316419 (+)
AMCG00013400 LOC108248236 coding upstream 180036 30302820 ~ 30310791 (+)
AMCG00013418 NA coding downstream 29242 30525855 ~ 30534025 (+)
AMCG00013415 arhgdia,LOC107654583 coding downstream 40190 30536803 ~ 30541363 (+)
AMCG00013414 p4hb,LOC107591928 coding downstream 51030 30547643 ~ 30557225 (+)
AMCG00013413 ppp1r27,LOC107087444,LOC101068817,LOC107748880,LOC107558871,LOC108242930,LOC101162449 coding downstream 63868 30560481 ~ 30562562 (+)
AMCG00013424 NA coding downstream 211172 30707785 ~ 30711079 (+)
G44182 NA non-coding upstream 33156 30455672 ~ 30457671 (+)
G43895 NA non-coding upstream 1044129 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 1288106 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 1312561 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 1332334 29156699 ~ 29158493 (+)
G44306 NA non-coding downstream 237923 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 240196 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 275768 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 277569 30774182 ~ 30774548 (+)
G44379 NA non-coding downstream 426133 30922746 ~ 30934437 (+)
AMCG00013408 NA other upstream 60178 30425007 ~ 30430649 (+)
AMCG00013399 NA other upstream 146822 30339802 ~ 30344005 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other upstream 261806 30218910 ~ 30229021 (+)
AMCG00013388 NA other upstream 400710 30083644 ~ 30090117 (+)
AMCG00013382 NA other upstream 416079 30063380 ~ 30074748 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other downstream 66627 30563240 ~ 30568219 (+)
G44325 NA other downstream 280238 30776851 ~ 30777169 (+)
AMCG00013468 NA other downstream 1404917 31901530 ~ 31911801 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other downstream 1776655 32273268 ~ 32284951 (+)
AMCG00013477 ppp1r37 other downstream 1897205 32393818 ~ 32400452 (+)

Expression


Co-expression Network