AMCG00013419


Basic Information

Item Value
gene id AMCG00013419
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30507951 ~ 30521671 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013419
tgtaaacaaggtcactgttgtgctacggtactgtgccatagtgcaacccTGACACCCAGAAgaagagtctgataagaaccagttggCGTAGTCGGCAGGATGGGGTTCACACTGGCTGCCCCTGCTGGCGGAATTAGGCTGCCACGCCGTGCGACTGGATTGGCGGATAGATGGGAATGGCAGCAATTGTTCATGCTATTGGTGGTTCTGCCCTTCCCCTCCTGTACGAGGTGTGTCGCCCTGTTGCGTGCTGCAATTAAGACACCGGCAATATTAATATCCCAAGTCCAATCTGTAACTGTACGGGAACTGTGGCGACGGATAACACGATTGACATAAGGGATATCTATGATACGAGCAAcggtttaaaatgcaaaagtgtTGCTTTCTGTAGTTTagtcattatttgtattgaaacctatatgtgtatattctcatttatatacacacacatttttttaaagcatttcaacGCTCGCTCGGGTGTACTGCGACTGTTGCTAAGCAACCAAATCAAGTTTCCGACAACGTCATTCCGCAGTTAGCTCGCTTGTGACGTCACGGCCAAGCCACGTATAAGATAAACAAACCGCGTACAAACTAACGCAGATCTAAAGCAGAcctaacacacacacctacctCACAGTTTACAGCGTACAAATCCTTTCGAAGATAAATCGTCATGTCTGCAACAGTGAGTCTAATGGATTTGGTGAACCTGTCCATCGGAACCCCGGATGTGGGGTCAGTCAATTTCAATGCCCTGCGTACCCTCCTGCTCCGATTACTGGACAAGCTGGACATCCAAGATGTGACGGCAGAGTGGCAGGAGCAGGACCGGGACCCTCGCTCCGAGACAGAGCAGCAGCCTCGAGAGACGCTGAACCCCTACCAACACATGGAGGATAAGCTGCAGGAGATGGAGAGGAAGATGGCCGTTTTGAGTCAGGACCTGCTCAGCCTCTCCGGTCCGGCCAGCACCGCCAGTGACATGGGGCAGCTGATCCGGCTGCAGAAGAGCGTGGAGGCAAACGGAGACAGCGTTTCCAAGGCAATGACCCTGATCCAGGACTTGCAGAAGGAGATCGATGATCTGAAGACCTGGAGGGACAGTCAGCAGAAGTTGTTTGAGGCTTCTCGATCTGCAGACCAGTCCAGTGATCAGCTCCCCCTGCAGACTGAACCTGCCCCGCCTTCCTCTCCCCGTGCTCCTACCCCACCCCTGGCTGAACCCACTGACACCCCAGCCGAGGAGACGACCTCTCCTTCCTCGCCCACTCTCCTACCTGACTCCTCAGCCTCCCCACCCCCGCTTTCCCCCCCCAGCGGGGTTGACCACTATGCAGAGACGGTGGAGGCCCTGCAGGACGTGAGACAGCTGAAAAACCGGCATGAAGCCCTTGAGGACAGAGTTACTCTGTTGGAGAGGAACAAAGCCGAGATCAGCCAACTGCAGGAGCTCCGGGCCCTGCTGGACGACCTGGCCAAGAGGGATCTGCCTCACAACCTTCTTGAGCAGCTGAACCAACTGAAGGCCATGGAGGAGAGCCTGTCTGCCGAGAGGGAGAAGCTGAAGGACTTAAAGATGTCAATTCCGACTTTCACTGTGGATCCATCGAGGAAAGGAGATGAAGCCATGGAAGGAGAGATGGCTGTTGAGATCACATACCTCAGGTCTGCTGTCCAGGACCTCCAGAGAGAGATAGAGCAGCTGAAGGTGAAGCAGCAGGAGACGAAGCAGTCGGAGCAAGCAGAGACCAGGACAGACACGCATCTACAGGACCAGCTGGACAAACTGAGGAATGATCTGGAGGGCTTGATGTCTTCGTCCACCAACTTGCTGTCGAAGAGCCCGGCACAGGATGAGACCCACGTGCCAGAGGACACAAGGCGCAAGGAGGAACAGAGGCAGTCACAGATGCTGATTGACACAAGCAAAAAAGTCAGCAAGCTTTTCCAGCATTATGAGAAGCTGCAGACCCTAGTCCCCAGGGCAGTGCAGAAAGGCCAGgaCTCGGATTTGATGGCTCATGTCCAGAATGCCATCCTCCGCCTCCAGGCCGATTGTGAGAAGCTGAGCAACGCAGCCAGCTTCCTGCTCAGGGatgagagagacaaacagaagCAACTTGACAAGGCTCTGGTCTCCAAGGTCAACTGGCTGCAATTTGAAGCCACGACCGAGCAGCTGAACAACATGTTGCAGGAGGTGCTGAACAAGATGTCTGGGCAGAACCAAGACTATCAGAAGACTGTTGAGGAGATCTCAAAGTGCAAGCTGGACCGCATGGAGCTGGACCCTCTGAAGCAGCAGCTGGAAGATCAATTGAAGGCCTTCCTCAAACAGCATGAGGAGCGGCCCACCCCCGAGGACAATGTGGACGACGCTGCTGGCATTAAGAAGCAGCTGGTGGCTGGAGTCCACTGCATTTCCTGCGACAGAGCAGTAGAGATGGTGGCACCTGGATCctTGAAGCCAGGGAGCAACCACACCAACTACAAGCTGGCCAAGTCTGAGAAGAACTTGGTTAACACGCGGAGCATCCACAGTGTGATGTGCAAGGAGGTGGAGAGGGTCCAGAGCTACATCAAGATCACAGAGAGTGTGCCCCGCAAGAATTTCAGCCAATCACGCTTACCTCCCCTGACAGGGCCTGTACGCAAGGCCAGCGACAGTGTCCCCAGACACAAGCAGATCTCACAGGTATCAGAGTGCAGATACCCATCTGTGTCCCGGAGCTCTGGGGGGAGCCACACACTCGCCAACCCTGTCCGCCGCGGCACCCGCCTGCTGCCGGTCTCACAAACCATACAGGCAAAGGAGTCTAAGGAGATTGATACCTTGGATCTGGAAGGACGCACCTACAGAGGAATGAACCCCCGACCGCCCTCCAAGCTTCCCCCCATCTCTCCCAATGACAgcCTTTCAGCTGCTGCGCGCACTCTCGTGGAACGCCCCGCGTCCTTGTTGAGCCAGCGTTCCCAGACCACCACTGTCCAGCTCCTGTTGTCGCAGAAGACCGCCGGAAAGAGATAAGGGACCCTGAAGAGCCACATGGACCTTAGCCAATCAAACTGACAACACTAATAGGGGCCTAAACTGTAGCATTAATTAGCTGATAGACCATCCAGTaagagaaagaaggaaggaaatgtAGCCACATTCTTGCGTTGCTCTCCTGCAATCCTTAATGCACCATAAGAACCATAATGCCCCAAAGAGACAGGACTACTATGGGGGGGGCAAACCTGTCATAATACATCGGATTGCATGCATAGTATATTGGTATGTAACTTCACATGCATACTATTTTGGTTTGCTTGCACCCTATTTGTGTGGGAAATCAAGGTGGTAGCAGCAGTGCAAGCTTTGTTCTCaagcaacacattactgaattactcatgttttatacatttgaactATTGTGATTTTATAGAGCTCTATTGCTATTGCTTTGACTTGATGTTTAATTTGTCCTTTTactgatctgcatgaattaataGGGAATACTGATTCTTCCCAAACCACAAAATGGTCATTTTCGTGGGACAAGATGGTCATTTTCGTGGGACAAGATGTGAACTGTGTGCACACAATGGTCATTTTCGTGGGACAAAATGATGAACTGTGCACACAATGGTCATTTTCGTGGGACAAAATGATGAACTGTGCACAAAAGCGCTTTCGTGCACAAAATTATATATGACACcattatgtacagtgagggaaaaaagtatttgatcccctatcaatcagcaagatttctggctcccaggtgtcttttatacaggtaacgagctgagattaggagcattCTCTGTAAGGTGCCCCATAACAAACCCTCTTCTGGGCATGAAATATGGTTTGGGAAGAATCAGTATTCCCTATTCATTCATGCAGATCAGTAAAAGGACAAATTAAACATGCGGTCAGAGCAATAGCAATAGAGCTCTATAAAATCACAATagttcaaatgtataaaacattcagtaatgtgttgcttGAGAACAAAGCTTGCACTGCTGCTATCACCttgatttcacacacaaatagggTGCAAGCAAACCGAAATAGTTACCCACATATTGAAGTAAGAAGCAAAGTGACAGAAAGGGACTTTCcaatataacttattttttgtatgtcaAAAGAATCAATCACCTGAATAAAGCTGaacacattaatatgaacaattaaaataaatactgagcAGCTTGTGTTTACTGATTTCATTTACTAAAGGTACAAAATGTGagcatgtttgttttgatttataaaactAATTCTGTGCCTCTTCTGAAAATGGCCACtccattgtaaaacaaaataattgataaaggatcacagaacaacaacaacaacaacaacaacaa

Function

GO: NA

KEGG:

id description
K24298 QRICH2; glutamine-rich protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013419 True 4374 mRNA 0.49 15 30507951 30521671

Neighbor

gene id symbol gene type direction distance location
AMCG00013410 NA coding downstream 71210 30430664 ~ 30436741 (-)
AMCG00013403 NA coding downstream 167490 30333448 ~ 30340461 (-)
AMCG00013404 NA coding downstream 175251 30322265 ~ 30332700 (-)
AMCG00013392 NA coding downstream 343473 30155262 ~ 30164478 (-)
AMCG00013393 rhot1a,LOC108430568,LOC107729179 coding downstream 354593 30126697 ~ 30153358 (-)
AMCG00013420 NA coding upstream 2236 30523907 ~ 30533879 (-)
AMCG00013421 NA coding upstream 102305 30623976 ~ 30635826 (-)
AMCG00013430 LOC104954087 coding upstream 171404 30693075 ~ 30697703 (-)
AMCG00013432 NA coding upstream 176569 30698240 ~ 30700665 (-)
AMCG00013427 mrpl12,LOC106606250 coding upstream 181095 30702766 ~ 30705013 (-)
G44213 NA non-coding downstream 52345 30384686 ~ 30455606 (-)
G44230 NA non-coding downstream 197185 30307026 ~ 30310766 (-)
G44086 NA non-coding downstream 417804 30088803 ~ 30090147 (-)
G43919 NA non-coding downstream 1008378 29497710 ~ 29499573 (-)
G43831 NA non-coding downstream 1386632 29119373 ~ 29121319 (-)
G44261 NA non-coding upstream 12300 30533971 ~ 30539317 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding upstream 18642 30540313 ~ 30562691 (-)
G44264 NA non-coding upstream 29718 30551389 ~ 30552050 (-)
G44259 p4hb,LOC107591928 non-coding upstream 32110 30553781 ~ 30599051 (-)
G44330 NA non-coding upstream 250871 30772542 ~ 30774110 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other downstream 21620 30483305 ~ 30486331 (-)
AMCG00013412 NA other downstream 25625 30468630 ~ 30482326 (-)
AMCG00013409 LOC107590438 other downstream 43860 30455727 ~ 30464091 (-)
G44243 NA other downstream 84926 30399887 ~ 30423025 (-)
AMCG00013405 NA other downstream 217084 30286642 ~ 30290867 (-)
AMCG00013425 NA other upstream 208616 30730287 ~ 30742643 (-)
G44719 NA other upstream 2044089 32565760 ~ 32567952 (-)
AMCG00013488 NA other upstream 2100482 32622153 ~ 32627904 (-)
AMCG00013518 NA other upstream 2947178 33468849 ~ 33501747 (-)
G45037 NA other upstream 3156553 33678224 ~ 33678907 (-)

Expression


Co-expression Network