AMCG00013422


Basic Information

Item Value
gene id AMCG00013422
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30770263 ~ 30772373 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013422
CCGCCGACAGTCACAGAGCTGCGAGCCTCCAGGACTGATGGTACTGATCCAGCAGCCGCAGTGTAGCCTGGCGTCCTATAACCTGCTCTCGGCAGTGGTGAACAGTATGGAGCTGGTAGTGGCGGAGCAGGTGCGCTTCTCGGCGGCAGGCAGGACCGAGGCAGTGTGCTCTTGCACGGAGCCGACTGACCGCTTCATGCAGGAGGTCCCCTGCCCCTGCTTCCCCGGCGGCACGGCGCTGGTCAGTGGCTCCCCGCAGCGGCTTTTGGATTACAGTAACCCATCTCCACACCCGCCTGAGCCGGGACTCAAGGCTCCCAGCCACCTAAGTAGCATTTCCAGGGCTGGCATGGGCATCATCAAGACGGTCACTTCGCAGTGGCGCCTCCAGGAGAGGAAGACGCTGGTGGTGCGGTCGGCAAGCACTGGTGCCCGGTACCCTTCTCCCTACGGGCAGGTGGCGGCCGTGGCTCTGCAGGACCCCCGCCTCGGGCAGGTGCGCTCGGTCAAGCCACAGAACTGCCGCCGCCTGGTGGTGCTGGGTGCCCCGATGGTGGGCAAGAGTTCCCTGGTCCGGAGGTTCCTGAGAGACGGGTTCGATGAGCGGTACCAGCCCACGGCAGAGGACTTCCACAGGAAGCTGTTCCAGATCCGGGGGGAGAGCTACCAGCTGGACATCCTGGACGCGTCCGGGGAGAGAGGCTTCCCTGCCAAGAGGAGGCTGTCCATCCTAACAGGTGACCTCTTCCTGCTGGTGTTCAGTCTGGACGACCGGCGCTCCCTGGAGGAGGTGCGCACGCTGCTGCACGAGGTGGCGCTGGCGAAGAGCAAGCTCGCAAAGCCCAAGGAGCAGCTGCGCGTGCCCACCGTCATCTGCGGCAACAAGCTGGACCTGCAGCCGGCCGAGAGGGTCGTCAGCCGGGCAGAGGTGCACCAGGCTCTGGGGGAGGGATGCACCTATTTTGAAACCTCTGCCAAAGAGAACATTAACCTAGAGATGATGTTCCGGGCCCTGGCCCAGAAGGGCGGTCTCCCCACCGAGACCGGACCCTCCCAGCACCGCAAGGTCTCCATCCGCAGCTACCAGGCCCTCCGCCTGGTCCGGCGGGGGGGGAAAGCGAACCGAGCGGTAGCAGGCGAGGCTTCCTACGGGGCGGTGTGCCCCCTGGCTCGCCGACCCAGCTTCAGCACTGACTTACGGCTGATTGTGGGACCCAGGAAGAGAAGCAAACCGCTGGAGAAGTGCAACATTCAGTGAAACCGAAGGGGAAAGAGAAAATGGATGACTATTCACTCTGAGGTGAAGCGAGGAAAGACTCCGGGCTCGCTGTAGTTTGGAAGGTTTTCCCGGTTGCCGTGGACATTATGATTGTCTGCAGACATCCAGCATGTTGGACCGGGCCGCCTCAGTGCACAGACCGCACCGCTGTGACACCCTTTACCTTGGGAACAAAACTCTGTGAACgcaataaatgtgtatatatgtgaatattacattttcgagcattttaatattttaataaaagattaCACAATGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013422 True 1540 mRNA 0.61 2 30770263 30772373

Neighbor

gene id symbol gene type direction distance location
AMCG00013423 NA coding upstream 41028 30727085 ~ 30729235 (+)
AMCG00013424 NA coding upstream 59184 30707785 ~ 30711079 (+)
AMCG00013413 ppp1r27,LOC107087444,LOC101068817,LOC107748880,LOC107558871,LOC108242930,LOC101162449 coding upstream 207701 30560481 ~ 30562562 (+)
AMCG00013414 p4hb,LOC107591928 coding upstream 213038 30547643 ~ 30557225 (+)
AMCG00013415 arhgdia,LOC107654583 coding upstream 228900 30536803 ~ 30541363 (+)
AMCG00013437 NA coding downstream 87351 30859724 ~ 30871739 (+)
AMCG00013438 NA coding downstream 121059 30893432 ~ 30895656 (+)
AMCG00013439 NA coding downstream 134473 30906846 ~ 30907997 (+)
AMCG00013440 NA coding downstream 167707 30940080 ~ 30949350 (+)
AMCG00013446 vasp,LOC102786205 coding downstream 213099 30985472 ~ 31044736 (+)
G44307 NA non-coding upstream 32776 30736809 ~ 30737487 (+)
G44306 NA non-coding upstream 35468 30734536 ~ 30734795 (+)
G44182 NA non-coding upstream 312592 30455672 ~ 30457671 (+)
G43895 NA non-coding upstream 1323565 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 1567542 29179098 ~ 29202721 (+)
G44322 NA non-coding downstream 8 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 1809 30774182 ~ 30774548 (+)
G44379 NA non-coding downstream 150373 30922746 ~ 30934437 (+)
G44380 NA non-coding downstream 152363 30924736 ~ 30926480 (+)
G44383 NA non-coding downstream 163467 30935840 ~ 30936171 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other upstream 202044 30563240 ~ 30568219 (+)
AMCG00013416 alyref,LOC106606979 other upstream 273650 30490827 ~ 30496613 (+)
AMCG00013408 NA other upstream 339614 30425007 ~ 30430649 (+)
AMCG00013399 NA other upstream 426258 30339802 ~ 30344005 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other upstream 541242 30218910 ~ 30229021 (+)
G44325 NA other downstream 4478 30776851 ~ 30777169 (+)
AMCG00013468 NA other downstream 1129157 31901530 ~ 31911801 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other downstream 1500895 32273268 ~ 32284951 (+)
AMCG00013477 ppp1r37 other downstream 1621445 32393818 ~ 32400452 (+)
AMCG00013478 NA other downstream 1650903 32423276 ~ 32455686 (+)

Expression


Co-expression Network