Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00013424 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030125.1 |
| NCBI id | CM030125.1 |
| chromosome length | 49972098 |
| location | 30707785 ~ 30711079 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0097458 | obsolete neuron part | cellular_component |
| GO:0001917 | photoreceptor inner segment | cellular_component |
| id | description |
|---|---|
| ko04744 | Phototransduction |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00013424 | True | 753 | mRNA | 0.62 | 5 | 30707785 | 30711079 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00013413 | ppp1r27,LOC107087444,LOC101068817,LOC107748880,LOC107558871,LOC108242930,LOC101162449 | coding | upstream | 145223 | 30560481 ~ 30562562 (+) |
| AMCG00013414 | p4hb,LOC107591928 | coding | upstream | 150560 | 30547643 ~ 30557225 (+) |
| AMCG00013415 | arhgdia,LOC107654583 | coding | upstream | 166422 | 30536803 ~ 30541363 (+) |
| AMCG00013418 | NA | coding | upstream | 173760 | 30525855 ~ 30534025 (+) |
| AMCG00013407 | NA | coding | upstream | 254831 | 30439674 ~ 30452954 (+) |
| AMCG00013423 | NA | coding | downstream | 16006 | 30727085 ~ 30729235 (+) |
| AMCG00013422 | NA | coding | downstream | 59184 | 30770263 ~ 30772373 (+) |
| AMCG00013437 | NA | coding | downstream | 148645 | 30859724 ~ 30871739 (+) |
| AMCG00013438 | NA | coding | downstream | 182353 | 30893432 ~ 30895656 (+) |
| AMCG00013439 | NA | coding | downstream | 195767 | 30906846 ~ 30907997 (+) |
| G44182 | NA | non-coding | upstream | 250114 | 30455672 ~ 30457671 (+) |
| G43895 | NA | non-coding | upstream | 1261087 | 29434050 ~ 29446698 (+) |
| G43855 | NA | non-coding | upstream | 1505064 | 29179098 ~ 29202721 (+) |
| G43853 | NA | non-coding | upstream | 1529519 | 29177051 ~ 29178266 (+) |
| G43799 | NA | non-coding | upstream | 1549292 | 29156699 ~ 29158493 (+) |
| G44306 | NA | non-coding | downstream | 23457 | 30734536 ~ 30734795 (+) |
| G44307 | NA | non-coding | downstream | 25730 | 30736809 ~ 30737487 (+) |
| G44322 | NA | non-coding | downstream | 61302 | 30772381 ~ 30774068 (+) |
| G44323 | NA | non-coding | downstream | 63103 | 30774182 ~ 30774548 (+) |
| G44379 | NA | non-coding | downstream | 211667 | 30922746 ~ 30934437 (+) |
| AMCG00013417 | mcrip1,LOC106601427,LOC106606980 | other | upstream | 139566 | 30563240 ~ 30568219 (+) |
| AMCG00013416 | alyref,LOC106606979 | other | upstream | 211172 | 30490827 ~ 30496613 (+) |
| AMCG00013408 | NA | other | upstream | 277136 | 30425007 ~ 30430649 (+) |
| AMCG00013399 | NA | other | upstream | 363780 | 30339802 ~ 30344005 (+) |
| AMCG00013396 | tbc1d16,LOC106597465,LOC106606686 | other | upstream | 478764 | 30218910 ~ 30229021 (+) |
| G44325 | NA | other | downstream | 65772 | 30776851 ~ 30777169 (+) |
| AMCG00013468 | NA | other | downstream | 1190451 | 31901530 ~ 31911801 (+) |
| AMCG00013473 | LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 | other | downstream | 1562189 | 32273268 ~ 32284951 (+) |
| AMCG00013477 | ppp1r37 | other | downstream | 1682739 | 32393818 ~ 32400452 (+) |
| AMCG00013478 | NA | other | downstream | 1712197 | 32423276 ~ 32455686 (+) |
