AMCG00013425


Basic Information

Item Value
gene id AMCG00013425
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30730287 ~ 30742643 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013425
atggagggagggagcgagggaaGGGGGTGTCTGTGGCAGGGCAGCAAGGTTTGCTCAGCCCGGCTCCCCCAGCACCACAGTGCTGTAGTCACAGTGGTTGTGTTGCTCTGGACTGCGTTGCGCTGTGGCGAACAGAACAGCACACACCCCTCGTCTTTGCTGGCTGCTCCCTTGAACCCGGGTCCTGCCCCCCGGCCACACCTCCTGGACTGACCCCACCCTCCCTGGACTGAGAGGCCCCCCACTCCAGAAGGCTCACTGCCTTTGCACCAGCAGGGGTTGGactgagtctctctctctctctttctgtttctcttgctTTCTTGTGCTCAAGTAATTTCCTAATTACctgacacccccccacaccatccTGTCACCATGACGACCTCGGCGCTGCGCCGGCAGGTTAAGAACATCGTGCACAACTACTCGGAGGCGGAGATCAAGGTGCGCGAGGCGACCTCCAACGACCCCTGGGGCCCATCCAGCTCACTGATGTCCGAGATCTCCGACCTCACCTTCAACGTGGTGGCTTTCGCTGAGGTCATGGGCATGCTCTGGAAGCGGCTGAACGACCACGGCAAGAACTGGCGCCACGTGTACAAGGCGCTCACCCTGCTGGACTACCTGCTGAAGACGGGCTCGGAGCGCGTAGCCCAGCAGTGCCGCGAGAACGTCTTCACCGTCCAGACCCTGCGCGACTTCCAGTACGTGGACCGCGACGGCAAGGACCAGGGCGTGAATGTGCGTGAGAAGGCCAAGCAGCTGGTGGCGCTGCTGCGCAACGAGGACCGGCTGAAGCAGGAGCGCGCCCACGCCCTCAAGACCAAGGAGCGCATGGCCGGCGTGCCCACCGGCCTGGGCAGTGGCGGCTCCCTGCCCACCAACTACCCCAGCCGGCGCACCAGCCAGCCCACCATGGCCTCTCTGTATGGGGAGGAGCACAGCCGCTCCAGGGGCTCGCCCTCCTCCTTCAACTCCTCGTCCTCCTCTCCGCGCCTGGCCTCTGACCTGGAGCAGGCCCGCCCCCAGACCAGCGGGGAGGAggagctgcagctgcagctggCACTGGCCATGAGCCGCGAGGAGAGCGAGAAGCCGCCGCAGCCTGCCGTGGAAGTGGACGTGGAGACGCAGCTGGAGATCGCCATGACCCTGAGCCAGGAGACACCCCCCCAGCTGGCCCCGGCCCTCGACATGGACGAGGAGATGCAGCTGCAGATCGCCATGAGCCTCAGCAGGGAGGAGCACGAGAAGGAGCAGAGGTCGCGGCACGGGGACGAGACACTGCTCCAGAGAGCTCTAGAGGAGAGCCGGCGCGAGAGCGTGGGCGGCCATGGGGAGTCGGCTCTGAGTGACCTGGTGGATATCTTCGGCCCGGTGTCAGCAGTACATCCCAGTGGAGACCCCTGGGACCTCACGGAGGGCGAGGACCAAGCTCCCTCCAGCCACCCCTGGACCGAACCCCCCTGTACGCAGCCCCATACCAGCCTCACCACCTCCGACCCCTGGGACTCTGTGGcagGCGCTCGTTCCACTACTCCAGTGACAGTCAGCCCATGGTCTCCCCCACCGGCCTCCAGCACCCAGTCCCAATCCTGGGGCACCAAGCTGAGCCCCCCTGACCCCTGGGAGCTCCCGCCCGGCCCCTCGCCCAGCCATCCCTGGATCTCCCCAGCTCACAGCTCAGATCCCTTCTCTAAACCACCTGACTACGCAGAGCGCAACGGCCCCGAGAGACCCTTTGCCTCTGGCCGGTCCAGCAGCCCCGCAGAGCTGGACCTGTTCGGGGAGCCTCTGTCCGGCAGCCAGCTGAATGGCCGGGGAGGGGGCAGCCCGGACACCTTTGACCTCTCCCACCTGGGGGAGAGCCTGAGGGGGGTGCCCAGCCCTCGGACCTGCCGGACTCCCGAGGCCTTTCTGGGCCCGACCGCCGCCTCGCTGGTCAACCTGGACACCCTGATTCCCAGCAACCCCCCTGCCAAGAACAGGAACCCCTTCCTctcaggtCTGAGCGCTCCATCCCCCACCAACCCCTTCCACAGCGACCAGCCCCGTCTGACCCTGAACCAGCTGCGTCCCTCCTCAGGGTCGCCCCAGCCTGGCCCCCTGCCCTACAGTGCctccctgcccctgcccctgagCAGCCACTCCCCCGTGCCCCTGCCCTCCTCTGTCACCCAGCCGCCCCCGTCGGGCGCCCCCGCCTTCTCCACCGCCGGCCCCGGCCTCCTGGACCTGCCTGGCAACCTGCCCCAGCCCCTGCTGCCCCTCTCCTCTGTCGCGCCCCCCGCTAGCGCACAGCAGGACGCGCTCAGCCGAAACCCCTTCTTGTGAAGATGCACCGATGGACAGACGGACGGACAGGCCAGCAGACCCAGGCGTCTCCTCCCCCCCGGCTGGGGTGCTGTCGAAGGGCTCCTCCGGGTCTgaactgcattatttttcagactttttaatttatttttccccccattctGTCTTGCATTTGAGTTTGGGACTGAATATTAATTCCTCAGCTGAGCTCTAACCACCCCCCCATCCCTGTGCCCAGCTAATGCCCTTCCTGCCCCGTTCTCCAGGAGGAATGTGATGGGAGGGAGacagatggagaaagagagggtgGGAGTAATTAAGAGGAGGAGAGTGGGGCAGTGAAGCACCCTGGGACACTTCGGTTTGTGCTGCTACTGCCCTGAGCTCCGGCCGGGACTCCCACTCTCAGCACACTCTCTCCGCAGTGAGGCGGCCATGCAGCACAGACCCTCTGAGGGCCAGGGGGGCCGGTGTGGGTCCCTGCCTCTAGCACAGGACACAGACTGAGCCCCCCATCAcacgccacacacacacttcctctcTGCTCCAACCAGGACAGGCAGCCGCACAGCACCAGGACTCCAGGACCGGAGGgcagtttttggtttgttttttacctggtgttttatttctctgttgaAACCAAATCTGCAAATCGAAACCTGCTGGGCGTGAGCGGTGAGCGGAAACGGGCTGCCGTCGGATCGGGGCTCTTGTGTCCGAGACACGGGACAGAAGACATTGGTGAGTGGGTTTCAGGACGGCCCAGCTCAGGGAGAAGACAGCTGAACACTAAGACTGTGGTCTGTGTGGAATGGAGAATGTGAAACCGACATGTTGATCgctataaatatgaatataaatatatatatatatatataaatatataaaagaacaaataaatacaatttgcacTGATTTAGTGCCTTTCCTTACCATTGCGTTTGATCCCGtcgtatatttattttaatacaatgtgtGAAGCTGT
>TU55246
GTGCCCCTGCCCTCCTCTGTCACCCAGCCGCCCCCGTCGGGCGCCCCCGCCTTCTCCACCGCCGGCCCCGGCCTCCTGGACCTGCCTGGCAACCTGCCCCAGCCCCTGCTGCCCCTCTCCTCTGTCGCGCCCCCCGCTAGCGCACAGCAGGACGCGCTCAGCCGAAACCCCTTCTTGTGAAGATGCACCGATGGACAGACGGACGGACAGGCCAGCAGACCCAGGCGTCTCCTCCCCCCCGGCTGGGGTGCTGTCGAAGGGCTCCTCCGGGTCTgaactgcattatttttcagactttttaatttatttttccccccattctGTCTTGCATTTGAGTTTGGGACTGAATATTAATTCCTCAGCTGAGCTCTAACCACCCCCCCATCCCTGTGCCCAGCTAATGCCCTTCCTGCCCCGTTCTCCAGGAGGAATGTGATGGGAGGGAGacagatggagaaagagagggtgGGAGTAATTAAGAGGAGGAGAGTGGGGCAGTGAAGCACCCTGGGACACTTCGGTTTGTGCTGCTACTGCCCTGAGCTCCGGCCGGGACTCCCACTCTCAGCACACTCTCTCCGCAGTGAGGCGGCCATGCAGCACAGACCCTCTGAGGGCCAGGGGGGCCGGTGTGGGTCCCTGCCTCTAGCACAGGACACAGACTGAGCCCCCCATCAcacgccacacacacacttcctctcTGCTCCAACCAGGACAGGCAGCCGCACAGCACCAGGACTCCAGGACCGGAGGgcagtttttggtttgttttttacctggtgttttatttctctgttgaAACCAAATCTGCAAATCGAAACCTGCTGGGCGTGAGCGGTGAGCGGAAACGGGCTGCCGTCGGATCGGGGCTCTTGTGTCCGAGACACGGGACAGAAGACATTGGTGAGTGGGTTTCAGGACGGCCCAGCTCAGGGAGAAGACAGCTGAACACTAAGACTGTGGTCTGTGTGGAATGGAGAATGTGAAACCGACATGTTGATCgctataaatatgaatataaatatatatatatatatataaatatataaaagaaca

Function

GO: NA

KEGG:

id description
K12471 EPN; epsin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013425 True 3304 mRNA 0.63 12 30730287 30742643
TU55246 False 1056 lncRNA 0.57 1 30730378 30731433

Neighbor

gene id symbol gene type direction distance location
AMCG00013426 hgs coding downstream 6757 30711509 ~ 30723530 (-)
AMCG00013427 mrpl12,LOC106606250 coding downstream 25274 30702766 ~ 30705013 (-)
AMCG00013432 NA coding downstream 29622 30698240 ~ 30700665 (-)
AMCG00013430 LOC104954087 coding downstream 32584 30693075 ~ 30697703 (-)
AMCG00013421 NA coding downstream 94461 30623976 ~ 30635826 (-)
AMCG00013428 NA coding upstream 7140 30749783 ~ 30760059 (-)
AMCG00013431 NA coding upstream 17960 30760603 ~ 30761570 (-)
AMCG00013429 NA coding upstream 31639 30774282 ~ 30778472 (-)
AMCG00013434 NA coding upstream 48811 30791454 ~ 30801211 (-)
AMCG00013436 NA coding upstream 60900 30803543 ~ 30808546 (-)
G44259 p4hb,LOC107591928 non-coding downstream 131236 30553781 ~ 30599051 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding downstream 167596 30540313 ~ 30562691 (-)
G44264 NA non-coding downstream 178237 30551389 ~ 30552050 (-)
G44261 NA non-coding downstream 190970 30533971 ~ 30539317 (-)
G44213 NA non-coding downstream 274681 30384686 ~ 30455606 (-)
G44330 NA non-coding upstream 29899 30772542 ~ 30774110 (-)
G44381 NA non-coding upstream 182843 30925486 ~ 30931267 (-)
G44382 NA non-coding upstream 189117 30931760 ~ 30935200 (-)
G44384 NA non-coding upstream 194982 30937625 ~ 30937857 (-)
G44420 NA non-coding upstream 304082 31046725 ~ 31047119 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other downstream 243956 30483305 ~ 30486331 (-)
AMCG00013412 NA other downstream 247961 30468630 ~ 30482326 (-)
AMCG00013409 LOC107590438 other downstream 266196 30455727 ~ 30464091 (-)
G44243 NA other downstream 307262 30399887 ~ 30423025 (-)
AMCG00013405 NA other downstream 439420 30286642 ~ 30290867 (-)
G44719 NA other upstream 1823117 32565760 ~ 32567952 (-)
AMCG00013488 NA other upstream 1879510 32622153 ~ 32627904 (-)
AMCG00013518 NA other upstream 2726206 33468849 ~ 33501747 (-)
G45037 NA other upstream 2935581 33678224 ~ 33678907 (-)
AMCG00013531 NA other upstream 2950201 33692844 ~ 33699712 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000219_00169010_00178249 EPN3B, EPN3 coding CI01000219 null 168031 ~ 180155 (+)