AMCG00013426 (hgs)


Basic Information

Item Value
gene id AMCG00013426
gene name hgs
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30711509 ~ 30723530 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013426
cacacttcagGGTGAGGTTTCGCAGCCTCCGCCAGGCGGCGCTGTAGGGTATAGGGAACTCTGCCTTGCGACGCCCTCTACGGTAGCGGAAGCCGGAAGGACACAGAGCGTCAGAGCCAGAAAGATAATACACTCGTCGGCTGCAGAAAGACTGCGGCTCATCCCAGCGGCTCCGAAACCTGCGACTCGCCAGCCATGGGCAAGGGAGGCGGCACCTTCGAACGGCTTCTCGATAAAGCCACCAGTCAGCTGCTGTTGGAGACTGACTGGGAGTCCATCCTTCAGATCTGTGACCTCATTCGCCAGGGAGACACCCAagcGAAGTATGCCATCGCCGCCATCAAGAAGAAGCTGAACGACAAGAACCCCCACGTGGCCCTGTATGCTCTGGAGGTGCTGGAGTCAGTGGTGAAGAACTGTGGGCAGACGGTGCACGATGAGGTGGCCAGCAAGCAGACGATGGAGGAGCTGAAGGACCTGCTTAAGACGGAGCCCAATGTGAGGAATAAAATCCTGTACCTGATCCAGGCCTGGGCCCACGCCTTCCGCAACGAGCCCAAGTACAAGGTGGTGCAGGACACCTACCAGATCATGAAGGTGGAGGGCCACGTGTTTCCAGAGTTTAAGGAGAGCGATGCCATGTTCGCAGCTGAGAGGCATCACTGCCGTGCCTGTGGCCAGATCTTCTGTGGGAAGTGCTCCTCCAAATACTCCACCATCCCCAAGTTCGGCATCGAGAAGGAGGTGCGCGTGTGCGAGCCGTGCTTCGAGCTGCTCAACAAGAAGGTGGAAGGTAAAGCGGCCGGCTCCTCTGAGCTGCCCCCTGAGTACCTGACCAGCCCCCTGTCGCAGCAGTCTCAGGTAGTGGTCGAAGGATCACTGCCCCCCAAGCGAGACGAGGCCGCCttgcaggaggaggaggagctgcagcTGGCCATCGCGCTGTCGCAGTCTGAGGCCGAGGAGAAGGAGCGTATGAGACAGAAGACCTCGTACTCGGTGTACCCCAAGGCCGAGCCCACGCCTGTCACCTCCTCCGCCCCCCCGGCCAGCACCCTGTACTCCTCCCCTGTGAACTCTTCGGCTCCCACTGCTGAAGAGATCGACCCCGAGCTGGCACGCTACCTGAACAGGAACTACTGGGAGAAGAAACAGGAAGAGGTGCGCAAGAGCCCCACCCCTTCTGCGCCCGTGCCGTTGGCCGAGCCCCTGCCCATCAGCCAGCCCGTCGAGAGCCACCCCCCGGCCCAGCCAATCAACGTTGTGGAGCAGCAGTACCAGAACGGGGAGTCGGAGGAGAACCACGAGCAGTTCCTGAAGGCGCTGCAGAACGCCGTCACCACCTTCCTCAACCGCATGAAGAGCAACCACATGCGTGGGCGCAGCATCACCAACGACAGCGCCGTGCTCTCGCTCTTCCAGTCCATCAACAACATGCACCCCCAGCTGCTGGAGCTGCTCAACCAGCTGGACGAGCGGCGCTTGTACTACGAGGGGCTGCAGGACAAGCTGGCGCAGGTGCGGGATGCGCGGGCTGCCCTGAACGCCCTGCGGGACGAGCACCAGGAGAAGCTGCGCCGTGCGGCGGAGGAGGCCGAGAGGCAGCGGCAGATTCAGCTCGCGCAGAAACTGGAGATCATGAGGCAGAAGAAGCAGgagTACCTGGAGATGCAGAGGCAGTTGGCCATCCAGCGTCTGCAGGAGCAGGAGAAGGAGCGCCAGATGCGCCTGGAGCAGCAGAAACACACCATCCAGATGCGTGCCCAGATGCCAGCCTTTTCGCTGCCCTACGCACAGCTGCAGTCCCTGCCCCCGGTGGCAGGGGGCGTAGTGTACCAGCCCTCCGGCCCCCCCAACTACCCTGCCACCTTCAGCCCCTCGGGCTCCGTGGAGGGCTCCCCCATGCACACCGTGTATATGAACCAGCCGGGCCAGCCTGGCACCGCACCCTACCCTGCCATGCCCGTCTCTGCCACCGACCCCAACATGGTGAACGCCTATCTCTACCAGGCGGCCGGCTCCTCAGGGCAGAGCGCCGCCCCCGGACAAGCCAACGTGGTGTCCCAGTCGCAGAGCATTCCTCCGATATCCCAGGCTGCCCAGAACAGCGGCATGAGCTACATGGGCTCCCAGCCTGTGCCCATGGGCTACCAGCCCTACAACATGCAGAACATGATGTCTGCTATGCCCGGCCAGGACCCCAACCTCCCCTCGAtgccccagcagcagcagtaccTGCCGGGACAGCAGCCCATGTACCAGCAGATGCCCCCCCCCGGTGGTCCACAGCAGCaggtccagcagcagcagcagcagcagcagcagccggtGGCCCAGGGTGGCGGGGAGGCGCAGCTCATCTCCTTCGACTGACCGCCTCGGCCCCCCGGATCCCCGGCCCGGGACCCACTACACTCTGCTTCCTGTCTCCAGCTCTGTCAGCCCCCTGTGTATcagcccctgcccccccaaCACAGGTCATCACTCCAGTGCTTTATCTCAGAGCCCCTGTGGGagcccccaccacccccaaccTGCTATGTGTCACATCGTCATTAATTCCCAAAAACACAAATGGGGGGGGTGTGCGCTGCTCTGGAGCGAACCCGGATCGGAAATGTCACTCAGCACCTTGTCACGAGATCCCTGGAGCGCAGGGTGGCCTCCCAGTCTCTCGTtcagagggtggggggggctgatACACTTCCAGAGCcggtctctctcgctctctcttcctTCTTTCCTTCATTCTTTAGTGTTTCCTTATGAAACGAGATGCAGATGCGGACGTTTCAACTAGTTAAGCTGTCGTaagaaaattattatatttgaaatcaGTGGATCATGTCTGTCAGCGAAAGGGTTAAAATGAGGAGAGAACTAAACAAGAAAATgcggcggtggggggggggggggcatccTTGCCTCTGATGATGACgacgacgatgatgatgatgatgattttctaAGAGGACCTGCATGCTTCGTACGGCGTGAGAGATTGAGTGCTGATCGAGTGAGAACCATGTTGTTTGAGAGGCTGTTTCCTGCAGCTGCCCCCTGCTGGTGGGGAATGATCTGCTCTGGCTGActgctgccccctcccccctctctggTTGTGGAGTCGAACTCTCTCAGACagtgatgggggtgggggtgggggggtcctgCTCTGTAGTAATGGCCGTATATGCAGCATGTGTGTAACAAACCCACACCCAGTGACTTCCTGTAACCCTCTGTCATTTGTGAACCTCTTGgggatttttctgttttctttctttctttccttccttctcccCTCATTCTGATCTGTCCGACTTCGAAACgtcattttaagattatatttaataaactattctgttctgtt

Function

symbol description
hgs Predicted to enable kinase activity and metal ion binding activity. Predicted to act upstream of or within intracellular protein transport and phosphorylation. Predicted to be located in early endosome membrane. Orthologous to human HGS (hepatocyte growth factor-regulated tyrosine kinase substrate).

NR:

description
PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate isoform X5

GO: NA

KEGG:

id description
K12182 HGS, HRS, VPS27; hepatocyte growth factor-regulated tyrosine kinase substrate

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013426 True 3370 mRNA 0.60 20 30711509 30723530

Neighbor

gene id symbol gene type direction distance location
AMCG00013427 mrpl12,LOC106606250 coding downstream 6496 30702766 ~ 30705013 (-)
AMCG00013432 NA coding downstream 10844 30698240 ~ 30700665 (-)
AMCG00013430 LOC104954087 coding downstream 13806 30693075 ~ 30697703 (-)
AMCG00013421 NA coding downstream 75683 30623976 ~ 30635826 (-)
AMCG00013420 NA coding downstream 177630 30523907 ~ 30533879 (-)
AMCG00013428 NA coding upstream 26253 30749783 ~ 30760059 (-)
AMCG00013431 NA coding upstream 37073 30760603 ~ 30761570 (-)
AMCG00013429 NA coding upstream 50752 30774282 ~ 30778472 (-)
AMCG00013434 NA coding upstream 67924 30791454 ~ 30801211 (-)
AMCG00013436 NA coding upstream 80013 30803543 ~ 30808546 (-)
G44259 p4hb,LOC107591928 non-coding downstream 112458 30553781 ~ 30599051 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding downstream 148818 30540313 ~ 30562691 (-)
G44264 NA non-coding downstream 159459 30551389 ~ 30552050 (-)
G44261 NA non-coding downstream 172192 30533971 ~ 30539317 (-)
G44213 NA non-coding downstream 255903 30384686 ~ 30455606 (-)
G44330 NA non-coding upstream 49012 30772542 ~ 30774110 (-)
G44381 NA non-coding upstream 201956 30925486 ~ 30931267 (-)
G44382 NA non-coding upstream 208230 30931760 ~ 30935200 (-)
G44384 NA non-coding upstream 214095 30937625 ~ 30937857 (-)
G44420 NA non-coding upstream 323195 31046725 ~ 31047119 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other downstream 225178 30483305 ~ 30486331 (-)
AMCG00013412 NA other downstream 229183 30468630 ~ 30482326 (-)
AMCG00013409 LOC107590438 other downstream 247418 30455727 ~ 30464091 (-)
G44243 NA other downstream 288484 30399887 ~ 30423025 (-)
AMCG00013405 NA other downstream 420642 30286642 ~ 30290867 (-)
AMCG00013425 NA other upstream 6757 30730287 ~ 30742643 (-)
G44719 NA other upstream 1842230 32565760 ~ 32567952 (-)
AMCG00013488 NA other upstream 1898623 32622153 ~ 32627904 (-)
AMCG00013518 NA other upstream 2745319 33468849 ~ 33501747 (-)
G45037 NA other upstream 2954694 33678224 ~ 33678907 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000334_00211970_00229166 HGS coding CI01000334 null 211970 ~ 229303 (+)