AMCG00013442


Basic Information

Item Value
gene id AMCG00013442
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30914722 ~ 30938171 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013442
ATGGCCAAAAACCTGCGCTGCCTGGCCAAACAACCACCCAGCCCTGCTATTCAAAACAGGTTTGaggGTACGATCAGCTCTATATACCTGCTTCACAGAGCTCCTGCGTCAGCCTGGCTGGAAGGAAACCAGGTCCCGGGCTATAAGGACCTTTGTTGGAAAGAGGCTCAGTGCGCACAGTGCACAGACAGCGGCTCGCAGGGGACAAGGCACCTCACTGATCCATCACATCTGAGCTCCAAGAACGGGAATACTaccGTACTCCAGCATTTCATCATCCAGTCCGTGTTGCCAGCGGAGAAGTGAGGGGAGAAGGTTTCTGCTGGAGCTGATAGCGAGTGTGCTTCCTTCTCTCCCACTGAAGACTTTCCtgggagaaagagacagagagaaggaggaggtggGGACGTGAAAACCTAGGGCAGACCAGAAATTAGGCTCATGGCATCCACTGGTCTTCAGCTGCTGGGCCTGTGTTTGTCTCTGCTGGGCTGGCTGGGCGGGGCGCTGGTCTGCGTGGCCCCGATGTGGAAAGTCACCGCCTTCATTGGCAACAACATTGTGACGGCTCAGACCATCTGGGAGGGGCTCTGGATGAACTGCATCGTCCAAAGTACCGGGCAGATCCAATGTAAGGTGTATGACTCCATGCTGGCACTGCCACGAGACCTGCAAGCCGCCCGCGCTCTGTCCGTggtgtctgtgctgctgtgtggcGTGGCGCTGGCGCTGGGTGTCGTCGGGGTGAAGTGCACCAAGTGCGTGGGGCAGCAGAGCGTGAAGATGCAGATCAGCCAGGTTGCGGGGGCCCTGTTCTCCTTCGCCGGGCTGCTCTACCTCATCCCCGTCTGCTGGACTGCGCACTCGATCATCAGTGACTTCTACAACCCGGCAGTGGCTGCGCCGCTGAAGAGAGAGCTCGGTCCGGCACTTTACCTGGGCTGGGGGGCGTCTGGGTTGTTAATGCTGGGGGGTGGAATGCTGTGTGCTGGATCCAACACCCCTGCAGCCCCATCCTCACCCAACTACAGTGGCAGCAGCAGGCAAAGCAGCCCCCGGAGTGCCCCCACCCTGTCTGCAGGTCCAGTGAAGGGCTACGTCTGAGTCTCCCAGCGGACTGTTTCTCTCTTAACATTCATCAACTGCCAGTTATAGTCTTCACCCCTTGTACCCACCCAGCCTGGAAACTGCCTGTGATTCAAACTGCAGACTGACGACTGGCAACCCAATCCAAAATGATTCCTGTCTTATTActactatgattattattaatattattattattgaaaacatGATAATCAAAATCTTTTGCCACCTCAGCAATCATAACTCTACTCATGTGTGCCTGTTGCTGTAATTCATTCACTGTGTATCTGTCTgcatacagaaacaataaagTGTGATTCTCTTAGCTTTTGTGGGTCCACTAACAGCACTAAACCAACCCAGTGTGTCTTATTTAAGCATAACACTGTCTAAACTTAATCTGAACATGTTTATCTCATGTCTGTCTATACacaggtcagtgtgtgtgcccAGTGGTGATCATAATAAGGGAATGAGTGGAAACTAAAGAGGAGTGTGTTTTGCTGGTGCACTGAAAATGTTCTCTTGATATGCATGTGAATAATATACAGGATACACCAGTGGTTTCCAAAGGTTTTCACACGTCCCTGCTATTTGTGGTATTCAAATGATCACTGACCACCTGAATATGAATCATACAGcctttaaatacacacatacacatacaaggGACTGAAAAGTAATTACCAATAAAAATTCAACACTGATACAGGACACTTCATATTTTTAAGGATTTCTAAAATTTTGATTTGAGACAGATGTGATCGTGTGCAGGACGAAATATGCAACAGACCATtttttgggaaccactggttatgattaaaatatatataatgcaatagACAGCTGTGTGTTATAGGGTTTTGGCTTGGCTTTAATATCCACGTCATTCCTTTGGATAGACTCGAATGCCATTTTAGTGAAATTAGTGTGGTGTCTTCCTGACTTATCCATCTGGTTTATCCCAGAGGTGCTCTACGGGCTTTAGGGCAGGATGAGGAAACCATTACATCTTTCTAAATCTGTTCGCCACGAAGTACTGTTTAATACTCCGAGCTTCAAGATAgggtgttttatgttttcaagaACACTCCTGTCTGAAATTTCACAATATTCACTGCCCTTCAGAAATTACACACAGTGTGATCTCAGGTTCAATTAATCCCCAGCAGGGGAAGGCTTGTCCCAATACTTTTATGATAGTTTACACTTAAAATAACCCCAGGTTCAAGTATTTTCGTTTTGTTAATGCATGTCCATGAACtcttatatttgtatgtgtatttatttatgtgtttgttacaattttcacaaacaataaaagaataaatataa

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013442 True 2421 mRNA 0.47 4 30914722 30938171

Neighbor

gene id symbol gene type direction distance location
AMCG00013443 NA coding downstream 1910 30910944 ~ 30912812 (-)
AMCG00013441 NA coding downstream 9459 30896736 ~ 30905263 (-)
AMCG00013444 tbcd coding downstream 26532 30871902 ~ 30888190 (-)
AMCG00013435 NA coding downstream 58607 30850121 ~ 30856115 (-)
AMCG00013433 NA coding downstream 94532 30816609 ~ 30820190 (-)
AMCG00013445 NA coding upstream 20018 30958189 ~ 30976781 (-)
AMCG00013449 NA coding upstream 115642 31053813 ~ 31068895 (-)
AMCG00013448 NA coding upstream 143481 31081652 ~ 31082490 (-)
AMCG00013450 NA coding upstream 157826 31095997 ~ 31096392 (-)
AMCG00013456 NA coding upstream 264142 31202313 ~ 31203338 (-)
G44330 NA non-coding downstream 140612 30772542 ~ 30774110 (-)
G44259 p4hb,LOC107591928 non-coding downstream 315671 30553781 ~ 30599051 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding downstream 352031 30540313 ~ 30562691 (-)
G44264 NA non-coding downstream 362672 30551389 ~ 30552050 (-)
G44261 NA non-coding downstream 375405 30533971 ~ 30539317 (-)
G44420 NA non-coding upstream 108554 31046725 ~ 31047119 (-)
G44469 NA non-coding upstream 365358 31303529 ~ 31310495 (-)
G44487 NA non-coding upstream 431010 31369181 ~ 31371002 (-)
G44507 NA non-coding upstream 515880 31454051 ~ 31492508 (-)
G44519 NA non-coding upstream 567997 31506168 ~ 31506718 (-)
AMCG00013425 NA other downstream 172079 30730287 ~ 30742643 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other downstream 428391 30483305 ~ 30486331 (-)
AMCG00013412 NA other downstream 432396 30468630 ~ 30482326 (-)
AMCG00013409 LOC107590438 other downstream 450631 30455727 ~ 30464091 (-)
G44243 NA other downstream 491697 30399887 ~ 30423025 (-)
G44719 NA other upstream 1627589 32565760 ~ 32567952 (-)
AMCG00013488 NA other upstream 1683982 32622153 ~ 32627904 (-)
AMCG00013518 NA other upstream 2530678 33468849 ~ 33501747 (-)
G45037 NA other upstream 2740053 33678224 ~ 33678907 (-)
AMCG00013531 NA other upstream 2754673 33692844 ~ 33699712 (-)

Expression


Co-expression Network