AMCG00013444 (tbcd)


Basic Information

Item Value
gene id AMCG00013444
gene name tbcd
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30871902 ~ 30888190 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013444
ATGCTGACAGGGCTGTCATATGCCTCTGGGTTAGTGCTGAAGCAGCCATGCTATCCTGTGTTATCTCCGATTCCTGAGCGGATCCTGCCTGTAGAGGAGCACAGTCTCGTGGGGTTGCTAGGCCGGCCACACCGCAAGGTGGCCAGGGGGGAGGGCGCTGTACTGGTGTGCTGGGTGCTGTTGTCCGCAGTGGTGCCTGTGATCCTGAGGGCTCTGACCTACGATGAGAAGCGCGGCGCTTGCAGTGTTGGCTCCAACGTCCGCGACGCCGCCTGCTACGTGTGCTGGGCCTTCGCTCGGGCCTACGAACCGGAGGAGCTCCTTCCCTTCGTCTCAAAGATCGCCTGTGCCCTGGTCATCGCCGCAGTGTTTGACAGGGATGTGAACTGCCGGAGAGCCGCATCGGTGAGTCTTCAGACACTCCTGCCCAGCCCTGACCTGAACCGCTCACGTCAGCCCAGTGAGAGCCAGGCCGGCCTGCGGAAATTCCTGCTGCTTATCCTGCTCAGTTTTAAcgatttttctttctcttccaggCTGCGTTCCAGGAGAATGTGGGGAGACAGAGCCCCTGTCTCTGCTGTTTCTCCTGTGATACCATCTCTGTCCCAACAGGGTACATTTCCACATGGCATTGATATCCTCACTGCCGCAGACTACTTCTCAGTTGGGAACCGGACCAACTGTTATTTAACCATCAGTGTGTATGTGGCCCGGTTCCCAGAGTACACCCAGCCTATGATAGACCACCTGGTCGCAATGAAGATCAACCACTGGGATGGGGCGATTCGAGAGCTGGCCACTAAAGCTCTGCACAACCTGACACCCTGCGCTCCGGAGTACATGGCCACCACTGTTTTGCCAAAGCTGTTACCGATGGCAACTGGCATGGACCTGCACTCCCGGCACGGGGCGATCCTGGCCTGCGCTGAGATCACACACGCACTGTCTGAGCTGGCTGCTGCCTCTGACAGGTGGatctTCGACCGGCAGCAGTACAGGTGCTCAtgtttccatgtttttatttccttgtttttcagGGGATTTGGTGGTGAGCTCATGAGGCCAGCAGTCTGTGCGCTGATAGAAAAGATGTCTTTGTCCAAAATGCCGTACAGGAACAAACTCGTTATCAgtgGTTGGCAGTGGTTGATTGACGATAGCCTGAGATCTCTGCATCTCTTCTCCAGTGGGGCCCGGCAGAGCATAAAGGAGGCGGCCGTGTCAGCGCTGGCCGCGCTGTGCCAGGAGTATTACCAGCCGACGCCAGGAGCCGCTGACCCCACCATGCAGGAGGAGCTGGTGAGCCGGTACACCACCGAGCTGCAGAACCCTGAGGTGCTGACCCGCTGTGGCTGTGCCCTGGCGCTGGGAGCTCTGCCCCGCTTCATGCTCCAACACAAACTGCAGCAGGTGCTGCAGGGCCTCCAGAAGGCCTGCCGAATCTCGGACCGGGACGTGAGCTTCGCAGAGGCCAGAAGAGACGCCCTGAGAGCCATTTCACAGTTAGTATGA

Function

symbol description
tbcd Predicted to enable GTPase activator activity and beta-tubulin binding activity. Acts upstream of or within brain development and retina layer formation. Predicted to be active in lateral plasma membrane. Orthologous to human TBCD (tubulin folding cofactor D).

NR:

description
tubulin-specific chaperone D

GO: NA

KEGG:

id description
K21767 TBCD; tubulin-specific chaperone D

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013444 True 1515 mRNA 0.58 15 30871902 30888190

Neighbor

gene id symbol gene type direction distance location
AMCG00013435 NA coding downstream 15787 30850121 ~ 30856115 (-)
AMCG00013433 NA coding downstream 51712 30816609 ~ 30820190 (-)
AMCG00013436 NA coding downstream 63356 30803543 ~ 30808546 (-)
AMCG00013434 NA coding downstream 70691 30791454 ~ 30801211 (-)
AMCG00013429 NA coding downstream 93430 30774282 ~ 30778472 (-)
AMCG00013441 NA coding upstream 8546 30896736 ~ 30905263 (-)
AMCG00013443 NA coding upstream 22754 30910944 ~ 30912812 (-)
AMCG00013442 NA coding upstream 26532 30914722 ~ 30938171 (-)
AMCG00013445 NA coding upstream 69999 30958189 ~ 30976781 (-)
AMCG00013449 NA coding upstream 165623 31053813 ~ 31068895 (-)
G44330 NA non-coding downstream 97792 30772542 ~ 30774110 (-)
G44259 p4hb,LOC107591928 non-coding downstream 272851 30553781 ~ 30599051 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding downstream 309211 30540313 ~ 30562691 (-)
G44264 NA non-coding downstream 319852 30551389 ~ 30552050 (-)
G44261 NA non-coding downstream 332585 30533971 ~ 30539317 (-)
G44381 NA non-coding upstream 37296 30925486 ~ 30931267 (-)
G44382 NA non-coding upstream 43570 30931760 ~ 30935200 (-)
G44384 NA non-coding upstream 49435 30937625 ~ 30937857 (-)
G44420 NA non-coding upstream 158535 31046725 ~ 31047119 (-)
G44469 NA non-coding upstream 415339 31303529 ~ 31310495 (-)
AMCG00013425 NA other downstream 129259 30730287 ~ 30742643 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other downstream 385571 30483305 ~ 30486331 (-)
AMCG00013412 NA other downstream 389576 30468630 ~ 30482326 (-)
AMCG00013409 LOC107590438 other downstream 407811 30455727 ~ 30464091 (-)
G44243 NA other downstream 448877 30399887 ~ 30423025 (-)
G44719 NA other upstream 1677570 32565760 ~ 32567952 (-)
AMCG00013488 NA other upstream 1733963 32622153 ~ 32627904 (-)
AMCG00013518 NA other upstream 2580659 33468849 ~ 33501747 (-)
G45037 NA other upstream 2790034 33678224 ~ 33678907 (-)
AMCG00013531 NA other upstream 2804654 33692844 ~ 33699712 (-)

Expression


Co-expression Network