AMCG00013458


Basic Information

Item Value
gene id AMCG00013458
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31496119 ~ 31502050 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013458
CACTTTTTAggcttttatttgtaattgagATGTCCTCCCCAACACCGACATTTTATCCCCCACATTGCTGTGTATttgaatgtactgtatattcattattatctgACCTAACCGTGTACCTAATTGTTTGCTATTACAAAGTCagcattttataaacatttttgatAGGTGGCGCTATAGCAAGTTAGAGGTGTTTTCACGAAAGATACTTTAAGAGAAGGACTCTTTGGTCTTTGTCGAGTGGGTGTTGATTTTGGGGGTTAAAGGTTGTGTTTTGGTTTCGAGTATGGCAGCTGCGAGTTGGGTTCGATGGAGGCAACTGCCGCGGTTTGCTTCTCAGTTCAGCTGCTTATTTCGGCGGCCTGGACCGCTGCGACCAGGAGCTACAGTACGGCGAGTGAGCGGGACCCCCCGCGCTCGAATCGGGGAGAAGAGCAACGGGACGTGGGGCAAGTCTCGGGGCCCGGAGCCCCCGCAGTACACAGAACTCGACAAGGCAGATGCATGGATGCTGCGCAAGGCCCATGAAACAGGCTTCTTCATCCTAGGTGGGGTGTGCGTGTCCTTTGGGGGAGCAACTTATGTTGCCAACCTGCTGGCCCTGCGGAGGACCATGCTGCTGTCCCTGCCGGCCGCCCTGCTGCATGGCCTGGTGGTCACCTGCGCTGCCCTCTTCTGGCTGTGCGCAGTGTCACTGTATATTGGGCTGGAGGTCGAGATTGTGCatgagaaggaggaggagaaggaagagagggaggacGATGAGGACTGGCGGGGGCAGTGCCAGGACTGCCAGCGACGTGAAGAAGGGAAGACAAAGGAGCAGGAGGAGCAGGGGGGCAGTAAGGGGAAGTAAGGACAGCCTTTGTGAGCAATCTGTGTTGCTCTGCTCCAGTGACAGACTGAGGTGATTAtcttttgggggggggtggggtcatCTTCTTCAGCACTGGTTCTCAAGTCCTAGAGGAACCCCTGTGTGCCTCTTTGTccttccaactgagctcttaatcgAACCcatgatttaattaatgtttgtgttgtatCAACCTTCTTAGTTGTTCAAACAGGTGGAGATCAGTTGGGTAAGTATCTGACGAACTGCgtctggaatgaaaaccagaaacatggggagtcctccaggaccagggttgggaaacCCTGTTATTCAACACAAaactccaaccctggtcctggagagctacactgttaaaaaaatctaaaagcaaatgcatttttcatcttACAAACTGTTAAATATATAGACATGATAGTATTTGTAATAGAATATCCCAAATATGTAACTATCAAATCAATTATTGCCATCAGCAAGTTAATGTGATGTGACACATTttgatatatacagtgtatgtatgtatatagcaTCAACATCAGTGCAATCGCATGAGCAATTTAACACCgaaggaataaaaaaacacaatccaattatttttataatgcttgtatgtatttaatgtaattgatgCAAAAGCATTTATGAGTGTAATGTCAATGGATGCAATCTATAGTAGTAGTAAATTAGACAATTGAGATTAAACccaattaacttattttcagtGACTGTTTATCaattgattgtgtgtttttgtatgaatgtgattgtgtgtgaacACTTATCTTGATGAAGAACATTACTAGATCGAAACGttgatatgcatttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013458 True 1692 mRNA 0.45 3 31496119 31502050

Neighbor

gene id symbol gene type direction distance location
AMCG00013459 egln2 coding upstream 4713 31484542 ~ 31491406 (+)
AMCG00013460 NA coding upstream 30271 31464694 ~ 31465848 (+)
AMCG00013455 fkrp,LOC107699218,LOC107752280,LOC107566082 coding upstream 137752 31356805 ~ 31358367 (+)
AMCG00013451 NA coding upstream 345810 31149173 ~ 31150309 (+)
AMCG00013447 NA coding upstream 364905 31107642 ~ 31131214 (+)
AMCG00013461 NA coding downstream 114874 31616924 ~ 31641312 (+)
AMCG00013462 ap2s1 coding downstream 240757 31742807 ~ 31753408 (+)
AMCG00013465 NA coding downstream 270371 31772421 ~ 31773193 (+)
AMCG00013469 NA coding downstream 413051 31915101 ~ 31921375 (+)
AMCG00013472 NA coding downstream 486640 31988690 ~ 31990176 (+)
G44486 NA non-coding upstream 125117 31369207 ~ 31371002 (+)
G44468 NA non-coding upstream 185628 31303537 ~ 31310491 (+)
G44433 NA non-coding upstream 389811 31099350 ~ 31106308 (+)
G44388 NA non-coding upstream 525619 30966909 ~ 30970500 (+)
G44383 NA non-coding upstream 559948 30935840 ~ 30936171 (+)
G44529 NA non-coding downstream 145313 31647363 ~ 31665161 (+)
G44549 NA non-coding downstream 282543 31784593 ~ 31871473 (+)
G44561 NA non-coding downstream 396571 31898621 ~ 31899202 (+)
G44581 NA non-coding downstream 528206 32030256 ~ 32030922 (+)
G44590 calm1,LOC102778633,LOC107670363 non-coding downstream 551683 32053733 ~ 32057626 (+)
G44325 NA other upstream 718950 30776851 ~ 30777169 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other upstream 927900 30563240 ~ 30568219 (+)
AMCG00013416 alyref,LOC106606979 other upstream 999506 30490827 ~ 30496613 (+)
AMCG00013408 NA other upstream 1065470 30425007 ~ 30430649 (+)
AMCG00013399 NA other upstream 1152114 30339802 ~ 30344005 (+)
AMCG00013468 NA other downstream 399480 31901530 ~ 31911801 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other downstream 771218 32273268 ~ 32284951 (+)
AMCG00013477 ppp1r37 other downstream 891768 32393818 ~ 32400452 (+)
AMCG00013478 NA other downstream 921226 32423276 ~ 32455686 (+)
G44870 NA other downstream 1604242 33106292 ~ 33106595 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008316 tmem160 coding NC_007126.7 CM002899.2 8394819 ~ 8400091 (+)