AMCG00013460


Basic Information

Item Value
gene id AMCG00013460
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31464694 ~ 31465848 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013460
ATGGAGAGCTTGCAACGCAAGGACCTTTTAAATAAGAGCTCGTCCAGGGGAGATGATCGCTGCTTGTCGCTGGAGAAACACCGCCACGGAGAACTCGGTCCTTCGCAGTCTGCTGGGCTTGACTTGCAGAGAATGGGGGTGGACGGGTACTGTAAGACGCCAGTGGGGACTGTACGCCTCCCACATCCTATCGCCAAACTACGGTCCAGCCTCGCCTCTCAGACCCTTGCCACGGGCATCCCCACGTTAAAGCAACAGGGTAAGACCGGGGTCCCGATGTTGAATGGGGGGGTCACCTCTCCCGTGGCATCAGTCGAAGGCAGCTGTAGTGGCCGAGCACAAACGCCTAATGACTACCTAATTAGCAACGGGGTGGCAGACACTCCGATGGAGCATTCCGAAGCCACGAAGAGAATGCGAACGCTGGAGAACGGGGAGAACTTTGACAGCTGCCCCGCTGCGCCGAAAAGAGCCGCCGCCGACGCGCTTGGGAAACAGCTGCAGCAGCGGCGCAAGTGCGGCGAGAACGGAGACCCGGGCTCCGTGGTGCTGGTGGAGGGGAGCGGGACGGTTAGCGGGGCCAGGGAGTTATCGCCTACCAACCGCGACTGCAAGAAAAGGCGGATGGAGAGCGGCGAACGAAAACCGGACACCAAAAGCACCAAGGAGCTGGTGTTAAGCAATGGTAGCAACAACCACTACAGCCAGCACACCCATCACCATAAAGCCAACTCGCATTGTGGGCAGCGAGTGTTCAGTGTTGAGGCGGCAGCAGCCCGCCCCTCCCCAGAGAGCATTGCCCTGCAGTACATTGTGCCGTGTTTAAAGTATTACGGCATTTGTGTTAAAGACTCGTTTTTGGGAGCCGAGTTGGGTAGCAAGGTGCTACAGGAAGTCGAGACTCTAAACCAGAGCGGTAAATTTCGGGACGGGCAGTTGGTCAGCCAGAGGACTATCCCGTCGCGAAGTATCCGCGGCGACCAGATCGCCTGGGTGGAGGGCCGAGAGCCCGGCTGCGAGAGCATCGGCACCCTCATGGCGCAGGTTGATGAGGCGGTGATGTACAGCGCCATGAATGGCAGGCTTGGCAACCGGGTCATCAATGGCAGGACAAAGGTAAGACGGGTCAATCCAGGGCGCACCTTGGGCAtctaa

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG:

id description
ko00680 Methane metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013460 True 1155 mRNA 0.59 1 31464694 31465848

Neighbor

gene id symbol gene type direction distance location
AMCG00013455 fkrp,LOC107699218,LOC107752280,LOC107566082 coding upstream 106327 31356805 ~ 31358367 (+)
AMCG00013451 NA coding upstream 314385 31149173 ~ 31150309 (+)
AMCG00013447 NA coding upstream 333480 31107642 ~ 31131214 (+)
AMCG00013446 vasp,LOC102786205 coding upstream 419958 30985472 ~ 31044736 (+)
AMCG00013440 NA coding upstream 515344 30940080 ~ 30949350 (+)
AMCG00013459 egln2 coding downstream 18694 31484542 ~ 31491406 (+)
AMCG00013458 NA coding downstream 30271 31496119 ~ 31502050 (+)
AMCG00013461 NA coding downstream 151076 31616924 ~ 31641312 (+)
AMCG00013462 ap2s1 coding downstream 276959 31742807 ~ 31753408 (+)
AMCG00013465 NA coding downstream 306573 31772421 ~ 31773193 (+)
G44486 NA non-coding upstream 93692 31369207 ~ 31371002 (+)
G44468 NA non-coding upstream 154203 31303537 ~ 31310491 (+)
G44433 NA non-coding upstream 358386 31099350 ~ 31106308 (+)
G44388 NA non-coding upstream 494194 30966909 ~ 30970500 (+)
G44383 NA non-coding upstream 528523 30935840 ~ 30936171 (+)
G44529 NA non-coding downstream 181515 31647363 ~ 31665161 (+)
G44549 NA non-coding downstream 318745 31784593 ~ 31871473 (+)
G44561 NA non-coding downstream 432773 31898621 ~ 31899202 (+)
G44581 NA non-coding downstream 564408 32030256 ~ 32030922 (+)
G44590 calm1,LOC102778633,LOC107670363 non-coding downstream 587885 32053733 ~ 32057626 (+)
G44325 NA other upstream 687525 30776851 ~ 30777169 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other upstream 896475 30563240 ~ 30568219 (+)
AMCG00013416 alyref,LOC106606979 other upstream 968081 30490827 ~ 30496613 (+)
AMCG00013408 NA other upstream 1034045 30425007 ~ 30430649 (+)
AMCG00013399 NA other upstream 1120689 30339802 ~ 30344005 (+)
AMCG00013468 NA other downstream 435682 31901530 ~ 31911801 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other downstream 807420 32273268 ~ 32284951 (+)
AMCG00013477 ppp1r37 other downstream 927970 32393818 ~ 32400452 (+)
AMCG00013478 NA other downstream 957428 32423276 ~ 32455686 (+)
G44870 NA other downstream 1640444 33106292 ~ 33106595 (+)

Expression


Co-expression Network