AMCG00013468


Basic Information

Item Value
gene id AMCG00013468
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31901530 ~ 31911801 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013468
ATGCAGACGGTACGGAGAGACTCAATCGACGACTGGGAGAGAAAGATGCCCCAGATGACGTCCTTTGTGCGGCAGCTGGTGAAGGAGACCGAAAGAATGGTGGCATTCTTCTTCAAGACGGGGTCACCAGGGTTGGGCGGGGGCGACGAGGAAGAGGACGAAGAGCCCATGCCCAGCCCTTACCTGGACAGGCCAGTGCTGGACAAACACAAGGCCGAGGGTGAAGCAGGCGGCGGCATCCGCTTTGCCCTGGCTAGCATGCAGGGCTGGAGAGTGCAGATGGAGGATGCCCACACTTGCGTGCCCAAGCTGCCCAGGGAGCTGTCTGATTGGGGGTTCTACGCAGTGTACGACGGCCATGCCGGGAGCGGGGTGGCCCAGTACTGCTCCCAGCACCTCCTAGAGCACATCCTGGAGACAGGGGCAGTCACAACAGCCGAAGACAAGGAGGCTGTGAAGGAGGGCATCAGAGAGGGATTCCTCACCATAGATGGGCACATGCACAAGCTGGTGCGCTACAAAGACTGGGATCGCAGCGGCTCCACAGTGGTGGCCGCCATGGTCTCCCCGAAACATATCTATTTCATCAATTGTGGCGACTCACGGGCCGTGCTGTGCCGCGATGGGCAGGTGTGCTTCTACACTGAGGACCACAAGCCCTTCAACCCACGCGAGAAAGAGAGGATTGAGAACGCAGGTGGCACTGTCACCCTGCAGAGGGTCAACGGCTCACTGGCCGTGTCACGGGCACTAGGAGACTTTGATTTCAAGGAGGTGCAGTGGCGTGAGCCCACCGAGCAACTGGTGTCGCCTGAGCCAGAGGTATATGAGGTGCAGCGCAGCCCTGCGGATGAGTTCCTGGTGCTGGCCTGTGATGGCGTGTGGGACACCATCAACAACGAGGACCTGTGTGCCTTTGTCCATAGCCGACTGCAGCTTTCTAATGACCTTCAGGACATCTGCTGTCAAGTCATCGACCTCTGTCTGTATAAGGGCAGTCAAGACAACATGAGCATCACCCTCGTCTGCTTTCCTGGAGCCCCCCAGGTGTCTGAGGATGCTATTCATCGTGAGGCAGAGCTAGAGGAGCTACTGGAGAGCAAAGTGGCAGATATTTTTGAGGAACAGCGCAAGAACGGCATACCCGACCTACTGTACGTGATGAAGTACTTGGCGTCTGAGAGGATACCAGGGCTGCCACCTGGTGGGGGTGTCACCAGCAAGAGGGACTGCATCATCTCTGCCTATTACAAACTGAGACAAGAATTCACAATCCAGGGGTCATTGGACATCATTGGGTCCGAGGATTCCAGTTAGCAGGTGGTTCCCATGGAAAGAGTCGTAGCCACAGAGTCTCCATAAAAAACACCTCCACCTTTGCTCTCTTCTCAGCCTTCATGAAAAAAAGCTTGCCTCCATTCTGAAGATCTCGCAAGATGGAAAGAATATGGATTGCATGTGACTGACAATCAACATACAACCAGGCCTGCATGGagattgaaaaaaacaacagagcaATAATCAGAATATTTAACTATTCCAGAGAGACATTGCCATCTCAGTGTAAACCAATCAACTATCTATAAGTATTTGTGCAATGGCCATAATAAATGTTTCTACCTATATTGCAAGCAGCTAGTCAACACTTTTGTGTCCTAATGAAATACTGAAACATTGCACTTAAGCAGCAGTTTATATGGACATATTGAATGGtctgcattatatattttttttttacaaaacaggGGTAGACCAGTACAAGTCCTTCTAGTCTATTCCATTGTAAGATTTTGGCACAACATGTTTGCTAATCCTTTAATGGAATCAATTATTACATTAAGCAACTGGTTGTACCAAAGACCTGCACTGTGATAGATTGGTTAGGACAGCCCCTGGTCTAAAAGAACAGTGATAACCATGCACCTTTCAGTATGTCCCCTCCGAGTGAGGTTTATAGCCGAAAACCCTCAGATCTTTCCAAGATGATTTGCTGATGACTCCTTTGTTCCTTTTTAGAAATAGAAGATTCCTCTGTAATATTCTGTAAAAGTACCCTATAAAAACTGTTCTCAAACTTCCATGTACCTTCCAGGTGAAACCGACCTAAGGGTTATAGTCTTGGCTGTGTACTGAGATTCAGTAGCTGCAAAGAACACAACCCTTGTGCGGTTGCACCTGCAGGGACTGTACATAGACTAGCTCTTTCCCACCTGTGTCCATCTTCTTTTGAATGTACTGTGCTGCCTTACTGTTTGTTACAAGAAATTCtgtgctaaataaaataaattataacaatttGTTAATAAGCTGAAGGTATTTAAATGGTTAGCGATAGATGAGGTCCTGCCATATTCCAATTCTAAATAGTGGAACAGTGAAATTTTCCCAACAGTCTGAACATCTGCCTCAAACTCTGTATTGTGCttgatgcatacatacattttccttcctttctATACATATCCAAAGTTAATAAACACAGCTCATTACCACCCTTGTGctaacaaaagaaaaattatGACAAATCACCAGTGTTCCCaatgaaaacagaagaacaaagcTGTGGTATAATAACCAATGGAGCATGTGTGTAACCCCCAGCTATTTCAGCCAGTGGTGTCTGGGCTACAGGACCAAAACTGAATAGAGATGCTGTTTATTTGAAGATGGCAGGGCTAAGTATGTTAATAAGATGTTATTGTAAGTGTAcactttttctatatttttt
>TU55551
cattgtaaatGGGAAGCTTTAGTAAATGTTTTAAGAGTTCAGTTACTTGTAGTTTGGGCTGGGTAAAAAGATGGATTTTCTGATTAATTGCGATTGTGGTTTGGACGATCTGATATCGATCTTATGAATCTATGCATTTTCTCATTGAATGAAAAAACGGTGCTGTCTGGCCAAATATATGcgtgaagaaaattaaaaaaaaaaaaaactttaaagcacaagcgCACATGCTCTGCCCCTCTCTCATTTGCCAAGGATAGAGCCACTCTGCACGCACCCCCGACAAATACATGATCCCCCCCCCAAGCTCTTCAATACTCAATTGGGCAAGGAAGAACCATCACTCAAACCTAGTgaaccaatggagacccatgatctaTGCCTCCCTCAAAGCCCCGCCCTCACggcaaaacagtgccaaaactcgtaaacggggaaaaaaaaaagtgaatccaAAGACAGCAAACATTGCAGCATCGTAAGCAAAGGCAGCGACTCCAGGGCAGTCAAGACAACATGAGCATCACCCTCGTCTGCTTTCCTGGAGCCCCCCAGGTGTCTGAGGATGCTATTCATCGTGAGGCAGAGCTAGAGGAGCTACTGGAGAGCAAAGTGGCAGATATTTTTGAGGAACAGCGCAAGAACGGCATACCCGACCTACTGTACGTGATGAAGTACTTGGCGTCTGAGAGGATACCAGGGCTGCCACCTGGTGGGGGTGTCACCAGCAAGAGGGACTGCATCATCTCTGCCTATTACAAACTGAGACAAGAATTCACAATCCAGGGGTCATTGGACATCATTGGGTCCGAGGATTCCAGTTAGCAGGTGGTTCCCATGGAAAGAGTCGTAGCCACAGAGTCTCCATAAAAAACACCTCCACCTTTGCTCTCTTCTCAGCCTTCATGAAAAAAAGCTTGCCTCCATTCTGAAGATCTCGCAAGATGGAAAGAATATGGATTGCATGTGACTGACAATCAACATACAACCAGGCCTGCATGGagattgaaaaaaacaacagagcaATAATCAGAATATTTAACTATTCCAGAGAGACATTGCCATCTCAGTGTAAACCAATCAACTATCTATAAGTATTTGTGCAATGGCCATAATAAATGTTTCTACCTATATTGCAAGCAGCTAGTCAACACTTTTGTGTCCTAATGAAATACTGAAACATTGCACTTAAGCAGCAGTTTATATGGACATATTGAATGGtctgcattatatattttttttttacaaaacaggGGTAGACCAGTACAAGTCCTTCTAGTCTATTCCATTGTAAGATTTTGGCACAACATGTTTGCTAATCCTTTAATGGAATCAATTATTACATTAAGCAACTGGTTGTACCAAAGACCTGCACTGTGATAGATTGGTTAGGACAGCCCCTGGTCTAAAAGAACAGTGATAACCATGCACCTTTCAGTATGTCCCCTCCGAGTGAGGTTTATAGCCGAAAACCCTCAGATCTTTCCAAGATGATTTGCTGATGACTCCTTTGTTCCTTTTTAGAAATAGAAGATTCCTCTGTAATATTCTGTAAAAGTACCCTATAAAAACTGTTCTCAAACTTCCATGTACCTTCCAGGTGAAACCGACCTAAGGGTTATAGTCTTGGCTGTGTACTGAGATTCAGTAGCTGCAAAGAACACAACCCTTGTGCGGTTGCACCTGCAGGGACTGTACATAGACTAGCTCTTTCCCACCTGTGTCCATCTTCTTTTGAATGTACTGTGCTGCCTTACTGTTTGTTACAAGAAATTCtgtgctaaataaaataaattataacaatttGTTAATAAGCTGAAGGTATTTAAATGGTTAGCGATAGATGAGGTCCTGCCATATTCCAATTCTAAATAGTGGAACAGTGAAATTTTCCCAACAGTCTGAACATCTGCCTCAAACTCTGTATTGTGCttgatgcatacatacattttccttcctttctATACATATCCAAAGTTAATAAACACAGCTCATTACCACCCTTGTGctaacaaaagaaaaattatGACAAATCACCAGTGTTCCCaatgaaaacagaagaacaaagcTGTGGTATAATAACCAATGGAGCATGTGTGTAACCCCCAGCTATTTCAGCCAGTGGTGTCTGGGCTACAGGACCAAAACTGAATAGAGATGCTGTTTATTTGAAGATGGCAGGGCTAAGTATGTTAATAAGATGTTATTGTAAGTGTAcactttttctatatttttttcccctcactcacatttaactgaataaataacttGTGTCAAATAGTGTGATTTGGATTACTTTGTGGCACACTGTTAATACTGAGAAGCCAACACACAGGCAAATGATCTTTCTTTAAATCAACACAGTAcacacttcctgtatgttgatTTTAAGGGGGAAGTATTTCACAAAAGACTATGATCACAAGCTGGAATTCAGCAGTCAACTGTGTACAATTACAGGGCTTCAAGTATGGCCAGCTGTAGCAGGAAATAACCTGGGGACTAATTCTGTGAGCAAGATGTTTCCTGAGGATTGAGGGACTGAGGTTAAATGGATTTAGCAAGGTTCAGTAATATTCTAGAAGTTCTTTTCCAGCAAAGCAAAAGGATGAGTATACATCATACCCCATCTAAATCAATACAGAACCACAATCagctctgtttttaaatatcaaaaataaaaatgttattaacgGTTTTCAATCACAGAATGGCTGGTGCTTGTGTCTTTAAACTCACATAGGTTTTCCTCAGAGCACTGTctaatgttaattaaaacacttcatattaaaagaaacaaaacaaagaaaatacctATATATGATGCATGTTGTGCTTACAGATCAAATCTGCGAATAACCTGGAT

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0030145 manganese ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013468 False 2728 mRNA 0.47 5 31901530 31911171
TU55551 True 2866 TUCP 0.40 5 31904968 31911801

Neighbor

gene id symbol gene type direction distance location
AMCG00013465 NA coding upstream 128337 31772421 ~ 31773193 (+)
AMCG00013462 ap2s1 coding upstream 148122 31742807 ~ 31753408 (+)
AMCG00013461 NA coding upstream 260218 31616924 ~ 31641312 (+)
AMCG00013458 NA coding upstream 399480 31496119 ~ 31502050 (+)
AMCG00013459 egln2 coding upstream 410124 31484542 ~ 31491406 (+)
AMCG00013469 NA coding downstream 3300 31915101 ~ 31921375 (+)
AMCG00013472 NA coding downstream 76889 31988690 ~ 31990176 (+)
AMCG00013474 NA coding downstream 314370 32226171 ~ 32226557 (+)
AMCG00013479 LOC107735004,LOC107735469 coding downstream 434337 32346138 ~ 32389962 (+)
AMCG00013476 NA coding downstream 552295 32464096 ~ 32475750 (+)
G44561 NA non-coding upstream 2328 31898621 ~ 31899202 (+)
G44549 NA non-coding upstream 30057 31784593 ~ 31871473 (+)
G44529 NA non-coding upstream 236369 31647363 ~ 31665161 (+)
G44486 NA non-coding upstream 530528 31369207 ~ 31371002 (+)
G44468 NA non-coding upstream 591039 31303537 ~ 31310491 (+)
G44581 NA non-coding downstream 118455 32030256 ~ 32030922 (+)
G44590 calm1,LOC102778633,LOC107670363 non-coding downstream 141932 32053733 ~ 32057626 (+)
G44598 NA non-coding downstream 224429 32136230 ~ 32138577 (+)
G44613 NA non-coding downstream 279378 32191179 ~ 32191395 (+)
G44620 NA non-coding downstream 374213 32286014 ~ 32286159 (+)
G44325 NA other upstream 1124361 30776851 ~ 30777169 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other upstream 1333311 30563240 ~ 30568219 (+)
AMCG00013416 alyref,LOC106606979 other upstream 1404917 30490827 ~ 30496613 (+)
AMCG00013408 NA other upstream 1470881 30425007 ~ 30430649 (+)
AMCG00013399 NA other upstream 1557525 30339802 ~ 30344005 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other downstream 361467 32273268 ~ 32284951 (+)
AMCG00013477 ppp1r37 other downstream 482017 32393818 ~ 32400452 (+)
AMCG00013478 NA other downstream 511475 32423276 ~ 32455686 (+)
G44870 NA other downstream 1194491 33106292 ~ 33106595 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other downstream 1464719 33376520 ~ 33412841 (+)

Expression


Co-expression Network