AMCG00013472


Basic Information

Item Value
gene id AMCG00013472
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31988690 ~ 31990176 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013472
ATGTTACCAAATGAGACCTGTGAGAACACCACTAGGATCCACGCTGATGGAAACCCAGTGGCCAGCACTGTGATGTTCATCGCTGGGGTGGTGGGCAATGTCGTTGCACTGGCCATCCTGGGCATCCACAGAAAGGAGCACCGGTCTAAGTCGTCAGTGTTCTGCATCCTGGTAACCGGACTGGCCGTCACTGACCTGCTGGGCACCTGTTTCCTCAGCCCACTGGTGTTCGTTTCCTATGCCCGCAACACCTCCCTGCTGGGGCTGGTGGGCACCCATGGCCTGTGTGACTTCTTTGCCTTCGCCATGACCTTCTTCGGCCTGGCCTCTATGCTGATCCTCTTCGCCATGGCTGTGGAGCGCTGCCTGGCCATCAGTCACCCCTACTTCTACTCCAAGCACATCAGCCGCAGCTTTGCCAAGGTCCTCCTGCCACTGGTGTATATTTTCACTTGCATTTTTTGCACCCTACCCTTCCTTGGCTATGGCAAATATAAGCAGTACTGCCCAGGGACCTGGTGCTTCATCAAGATGGAGGTCGGGGAGGGTGATGGCAGCCAAGTGTTGGCCTTCTCACTGTCCTACGCCACACTCATGGCCTTCCTCATTGTCGCCGTCTTTCTGTGCAACGGCTCGGTCATCGTCAGCCTGTGCCAGATGTACAAGAACCAGCTCAGCCGCCGGGGCTCTGTAGTCTCCTCCAACCGCAAGAGGAAGAGCTGGATTGGCCAAGGGGAGGAGGAGGTCGACCACCTGATGCTTCTGGCCTCCATGACCACCATATTTGTCATCTGCTCGCTGCCCCTCACTTGA

Function

GO: NA

KEGG:

id description
K04263 PTGIR; prostacyclin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013472 True 813 mRNA 0.57 2 31988690 31990176

Neighbor

gene id symbol gene type direction distance location
AMCG00013469 NA coding upstream 67315 31915101 ~ 31921375 (+)
AMCG00013465 NA coding upstream 215497 31772421 ~ 31773193 (+)
AMCG00013462 ap2s1 coding upstream 235282 31742807 ~ 31753408 (+)
AMCG00013461 NA coding upstream 347378 31616924 ~ 31641312 (+)
AMCG00013458 NA coding upstream 486640 31496119 ~ 31502050 (+)
AMCG00013474 NA coding downstream 235995 32226171 ~ 32226557 (+)
AMCG00013479 LOC107735004,LOC107735469 coding downstream 355962 32346138 ~ 32389962 (+)
AMCG00013476 NA coding downstream 473920 32464096 ~ 32475750 (+)
AMCG00013481 NA coding downstream 499895 32490071 ~ 32494429 (+)
AMCG00013485 NA coding downstream 599552 32589728 ~ 32599218 (+)
G44561 NA non-coding upstream 89488 31898621 ~ 31899202 (+)
G44549 NA non-coding upstream 117217 31784593 ~ 31871473 (+)
G44529 NA non-coding upstream 323529 31647363 ~ 31665161 (+)
G44486 NA non-coding upstream 617688 31369207 ~ 31371002 (+)
G44468 NA non-coding upstream 678199 31303537 ~ 31310491 (+)
G44581 NA non-coding downstream 40080 32030256 ~ 32030922 (+)
G44590 calm1,LOC102778633,LOC107670363 non-coding downstream 63557 32053733 ~ 32057626 (+)
G44598 NA non-coding downstream 146054 32136230 ~ 32138577 (+)
G44613 NA non-coding downstream 201003 32191179 ~ 32191395 (+)
G44620 NA non-coding downstream 295838 32286014 ~ 32286159 (+)
AMCG00013468 NA other upstream 76889 31901530 ~ 31911801 (+)
G44325 NA other upstream 1211521 30776851 ~ 30777169 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other upstream 1420471 30563240 ~ 30568219 (+)
AMCG00013416 alyref,LOC106606979 other upstream 1492077 30490827 ~ 30496613 (+)
AMCG00013408 NA other upstream 1558041 30425007 ~ 30430649 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other downstream 283092 32273268 ~ 32284951 (+)
AMCG00013477 ppp1r37 other downstream 403642 32393818 ~ 32400452 (+)
AMCG00013478 NA other downstream 433100 32423276 ~ 32455686 (+)
G44870 NA other downstream 1116116 33106292 ~ 33106595 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other downstream 1386344 33376520 ~ 33412841 (+)

Expression


Co-expression Network