AMCG00013473 (LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066)


Basic Information

Item Value
gene id AMCG00013473
gene name LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32273268 ~ 32284951 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013473
aaaagggggaggagagagagagagactaggACAACAGGCAGTGCAGGTTACAGAAGCTGCTCTTACTGATTTAGTTTTCTACCTCGTAGACATCTAGCGACTGTGGAATGGCAAAGAAGGGGATGAGCTGTGGCAGCAGTCAAGGATGAAGGCTTGACTTCCAGGAGAGAGAACAACAGTGGCTACAGTGGCCCCAGGAAGAGACAGGCaaagagcaggaggaggaggagagaagggtCTGGAACTCTGGACCTGAAGACCAAACCATGGACTCTGCACAAATGTTACCTCCCTTGGACATCTACAATGTTCCCTGCTAATCTCCTGGTCCTGATGGTCCTGTTGCTACCTCAAGTCTTCTCGGGAGACCAACGGGGTGTGGACTCGAGCCGCCTGGCCCGTCTCGAGCCCAGCCTGGCCCAGTCCATCCAGAACCTTCTGCTGACTCGGCTGGGCCTGCGGAACCAGCCTGCTCCCCAGCCTGGAGCCCCAGTCCCCCAGTACCTCCTGGACCTCTACCGCTTTCACTCCCAGGAGCCACACCTAATCCAAGACCGAGACTTCAGCTTTCCAGTCCAGCACACCCAGAGCGCCAACACCATTCGCAGCTTCCATCATCTGGAGTCTCCAGGACACCTTTACCCAAGCAGCCTGGGGAAAGCCAACAACTTCCAGATCATCTTCAACATTTCCTCCCTCCCTGATGATGAGCAGGTCACCTCAGCCGAGCTCCGCCTCTATCGGGTGCAGTGCTCTGGGGACTCCAGGGGGGGACAGAGGGTTAACCTGTACCACTTCCCCAATCCCGGGAGCCCTCTCGCTGCTGCCAGGCCCAAGCTCATGGAGTCCCGCCTGCTGCCTCAAGACCCAGATGCCCCCTCCTGGGAGAGCTTCAGCCTAAGCACAGACTTATTCACCCAGAGTTCTGGCCTTTTAGTATTCGTACTGGAAGCGGTGCCCTTGAACACTTCCTCTAGGCAGCCAAGGGAGCACTTGCGAGTGCGGAGGGCACCCAAGCAGGATGACCCCAGCTGGGCCCAGGAGAGGCCACTGTTGGTGACCTACAGCCACGATGGAAGGGGACAGTCTCTGAAACTCCGACCACCCACTATTACTTCAACAACCCTTGGACGGGAGGGGAGGACGCGTGGGCCGGGCCGGGATTGGAGGTATGGGCGGAGACAGGGGCGGGAGAGGAGGGTAAAGCGTAATGGCAGGAACCACAAGCTGAAGAAGCTGGCCAAGGCGAGATGCAAGAGGCACCCTTTGTACGTGGACTTCAAGGACGTGGGTTGGAACAAGTGGATCGTGGCCCCCAGCGGCTATCATGCATTCTTCTGCCTGGGCGAGTGCCGCTTCCCCCTAACCGACCATATGAACTCATCCAGCCATGCCATGGTGCAGACGCTGGTCAACTCAGTCAATGGCAAGGTGCCCCGGGCCTGCTGCGTACCCACCTCTCTCAGCCCCATCGCCATGCTGTACCTGGACCAGCATGATCGCGTGGTGCTCAAGAACTACCAGGATATGGTTGTGGAGGGCTGTGGCTGCAGATAA
>TU55621
AGGCGAGATGCAAGAGGCACCCTTTGTACGTGGACTTCAAGGACGTGGGTTGGAACAAGTGGATCGTGGCCCCCAGCGGCTATCATGCATTCTTCTGCCTGGGCGAGTGCCGCTTCCCCCTAACCGACCATATGAACTCATCCAGCCATGCCATGGTGCAGACGCTGGTCAACTCAGTCAATGGCAAGGTGCCCCGGGCCTGCTGCGTACCCACCTCTCTCAGCCCCATCGCCATGCTGTACCTGGACCAGCATGATCGCGTGGTGCTCAAGAACTACCAGGATATGGTTGTGGAGGGCTGTGGCTGCAGATAACAgctttgggggggagggggcatgGCTCAAGTAGTGTGAACTGACTCTCATTTCCATGCCGTGCCAAGCCAGATGCCCTTATGGGAACCATCTTTTTCCTTGAAACTTTTCTCTGTGGGATGGGAACTCCTCTAACTCATCCACTCAAAAAAGCAAGCCCCTACAGTTAACCAGAGCTGTAAATAGGGATGGAAATTGTTATGCTGCAGTTTGATCTGTTTCAGGTTTTGCAGTCAGCATGCTGTTTGTGTCAGTTGTACAATTGGACTCcacctgtgtctctgtgcagatTTGATTAGACAAGGTAACAACTGCTATGCTTTACTCTAAAAACTGAGACCAAAACATCCCTGTGCTCTTCCCCTTTGGCTTTTCACATCCTGATATGCTATTCTTTCCACAAGAAAGGCCCATTTCACATAAGTGAATTTTGGCTTTACATTTCAGTGATGAAGCAATGTAATAAGGGTGAATGAGTGAAAGCAATTACCATGCAAAACAGGCTACTTATAGAGACAAGATTGATAGGACAAACGTGACAGACTagatgtaaaacaaacatatagaTCCCTGGAACACAATATAGCGCCACTGTAATGTATCGAACTGCCACTTTTGAGTAATAAtcgtcaataaaataaataagtataaattATGGGAAGATTGTGAATTAATCACATGATATTTACTGacaagcattttatttaaatggcaaaaGTATCACTTATACTTATCATTGATTTCACCTGCCTAGTAGAATAGAAGCTTTTAAGCAAACAACATTATTAGCTCCATTAATTCACAAACAATGGGACAAGGACAAATTCATAGCTTCACAATGGAGACAATTATAGTAGATAACAATAATAAGGCACAGGGAAGATCAATGTACTAATGGGAAAGTATAGAATATATATTGAGCATATGTTAAACTTTGCATTTTGCAACTTTTTGGTTAAAtgagaaacataaaaacagaatgaaaattagtgacataaaatacaaaaacaggctTTGTGCTAag
>TU55622
GGGTCTCCTCTGTCTCAATGACATCATAACTAAGGAGGATCTCAACAGGAAAGTCAATTAGAGTTCTGCACAGTTTACCAGCTGGGTCTCTAACTTTTGcagagaaagagcgagagagggagagagagagagagagagagagagagagggggggagagtgaaaaagggggaggagagagagagagactaggACAACAGGCAGTGCAGGTTACAGAAGCTGCTCTTACTGATTTAGTTTTCTACCTCGTAGACATCTAGCGACTGTGGAATGGCAAAGAAGGGGATGAGCTGTGGCAGCAGTCAAGGATGAAGGCTTGACTTCCAGGAGAGAGAACAACAGTGGCTACAGTGGCCCCAGGAAGAGACAGGCaaagagcaggaggaggaggagagaagggtCTGGAACTCTGGACCTGAAGACCAAACCATGGACTCTGCACAAATGTTACCTCCCTTGGACATCTACAATGTTCCCTGCTAATCTCCTGGTCCTGATGGTCCTGTTGCTACCTCAAGTCTTCTCGGGAGACCAACGGGGTGTGGACTCGAGCCGCCTGGCCCGTCTCGAGCCCAGCCTGGCCCAGTCCATCCAGAACCTTCTGCTGACTCGGCTGGGCCTGCGGAACCAGCCTGCTCCCCAGCCTGGAGCCCCAGTCCCCCAGTACCTCCTGGACCTCTACCGCTTTCACTCCCAGGAGCCACACCTAATCCAAGACCGAGACTTCAGCTTTCCAGTCCAGCACACCCAGAGCGCCAACACCATTCGCAGCTTCCATCATCTGGAGTCTCCAGGACACCTTTACCCAAGCAGCCTGGGGAAAGCCAACAACTTCCAGATCATCTTCAACATTTCCTCCCTCCCTGATGATGAGCAGGTCACCTCAGCCGAGCTCCGCCTCTATCGGGTGCAGTGCTCTGGGGACTCCAGGGGGGGACAGAGGGTTAACCTGTACCACTTCCCCAATCCCGGGAGCCCTCTCGCTGCTGCCAGGCCCAAGCTCATGGAGTCCCGCCTGCTGCCTCAAGACCCAGATGCCCCCTCCTGGGAGAGCTTCAGCCTAAGCACAGACTTATTCACCCAGAGTTCTGGCCTTTTAGTATTCGTACTGGAAGCGGTGCCCTTGAACACTTCCTCTAGGCAGCCAAGGGAGCACTTGCGAGTGCGGAGGGCACCCAAGCAGGATGACCCCAGCTGGGCCCAGGAGAGGCCACTGTTGGTGACCTACAGCCACGATGGAAGGGGACAGTCTCTGAAACTCCGACCACCCACTATTACTTCAACAACCCTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013473 True 1557 mRNA 0.58 3 32273429 32283927
TU55621 False 1338 lncRNA 0.42 1 32283614 32284951
TU55622 False 1290 TUCP 0.56 3 32273268 32283499

Neighbor

gene id symbol gene type direction distance location
AMCG00013474 NA coding upstream 46711 32226171 ~ 32226557 (+)
AMCG00013472 NA coding upstream 283092 31988690 ~ 31990176 (+)
AMCG00013469 NA coding upstream 351893 31915101 ~ 31921375 (+)
AMCG00013465 NA coding upstream 500075 31772421 ~ 31773193 (+)
AMCG00013462 ap2s1 coding upstream 519860 31742807 ~ 31753408 (+)
AMCG00013479 LOC107735004,LOC107735469 coding downstream 61187 32346138 ~ 32389962 (+)
AMCG00013476 NA coding downstream 179145 32464096 ~ 32475750 (+)
AMCG00013481 NA coding downstream 205120 32490071 ~ 32494429 (+)
AMCG00013485 NA coding downstream 304777 32589728 ~ 32599218 (+)
AMCG00013487 NA coding downstream 319784 32604735 ~ 32608797 (+)
G44613 NA non-coding upstream 81873 32191179 ~ 32191395 (+)
G44598 NA non-coding upstream 134691 32136230 ~ 32138577 (+)
G44590 calm1,LOC102778633,LOC107670363 non-coding upstream 215642 32053733 ~ 32057626 (+)
G44581 NA non-coding upstream 242346 32030256 ~ 32030922 (+)
G44561 NA non-coding upstream 374066 31898621 ~ 31899202 (+)
G44620 NA non-coding downstream 1063 32286014 ~ 32286159 (+)
G44702 NA non-coding downstream 257684 32542635 ~ 32543676 (+)
G44747 NA non-coding downstream 370552 32655503 ~ 32655702 (+)
G44769 NA non-coding downstream 471787 32756738 ~ 32758380 (+)
G44790 NA non-coding downstream 552364 32837315 ~ 32837843 (+)
AMCG00013468 NA other upstream 361467 31901530 ~ 31911801 (+)
G44325 NA other upstream 1496099 30776851 ~ 30777169 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other upstream 1705049 30563240 ~ 30568219 (+)
AMCG00013416 alyref,LOC106606979 other upstream 1776655 30490827 ~ 30496613 (+)
AMCG00013408 NA other upstream 1842619 30425007 ~ 30430649 (+)
AMCG00013477 ppp1r37 other downstream 108867 32393818 ~ 32400452 (+)
AMCG00013478 NA other downstream 138325 32423276 ~ 32455686 (+)
G44870 NA other downstream 821341 33106292 ~ 33106595 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other downstream 1091569 33376520 ~ 33412841 (+)
AMCG00013516 NA other downstream 1157443 33442394 ~ 33449093 (+)

Expression


Co-expression Network