AMCG00013478


Basic Information

Item Value
gene id AMCG00013478
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32423276 ~ 32455686 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013478
TTTTTGTTTGTAACTATATTCGCTGTGTGGCAGTGgagagaaatgtaaatgtaaattataaactTGATTCAACACGTGGTCTAGTTTTGAATATTCTTTGAATGTCCATTAGCCGCGTTgctttacacatttataatgtaAGACTACTTTTTCATGAGGACAGATGAAAACAAGAAAATGGAGGCATTGGGAGGATTTTGCAGcagcttttatattttgtgttgtattattttatcgTTGCCAGCGAGCAACATCGTCTCagGTGTTGTGACGGTGGGTGGTAATGATCCTGGAAAAGAGTGTGTGTTCCCCTTCGTTTATGACAAGAATACATACTTTGAATGCACAACCATCAATAACAACCGCATCCCCTGGTGTGCCACAACCAGTGATTATCCTCAAGACAAGAAGTGGGGTAACTGTCCTTTTACAGGTATTGTGACGGTGGGTGGTAATGACCCTGGAAAACAGTGCGTGTTCCCCTTTGTTTATGAAAAGAAGATGTACTTTGAATGCACAACTATCAATAATGAGAACATACCCTGGTGTGCCACAACCAGTGATTATACTCAAGACAAGAAGTGGGGCAACTGCCCTTTTACAGGGCCGCCTGCGGGCTACTGGAGCACGACCCTGAAAAGGAAACAGAGTCAGAGGTGG
>TU55641
CTCAACGACAGCACCACTGCAGCGCACAGCACCATTGTGGCACAGTCAACAGGGGGAAATGTGGATCTGTCTCTTATGTTATATTTGTTCCAGGAAACTGCTGATTAAATTCAGGGTGCTGGAATAACCTCCCTGTACTTCCTGTAAGTCTTCTTGCTGAACGAAAATGGAGGCATTGGGAGGATTTTGCAGcagcttttatattttgtgttgtattattttatcgTTGCCAGCGAGCAACATCGTCTCagGTGTTGTGACGGTGGGTGGTAATGATCCTGGAAAAGAGTGTGTGTTCCCCTTCGTTTATGACAAGAATACATACTTTGAATGCACAACCATCAATAACAACCGCATCCCCTGGTGTGCCACAACCAGTGATTATCCTCAAGACAAGAAGTGGGGTAACTGTCCTTTTACAGGGCCTTCTACCACCGGTGGAAACAGTAATGGTGCACCCTGtcaatttccttttaaatacaaaaataagNNNN
>TU55642
CTCAACGACAGCACCACTGCAGCGCACAGCACCATTGTGGCACAGTCAACAGGGGGAAATGTGGATCTGTCTCTTATGTTATATTTGTTCCAGGAAACTGCTGATTAAATTCAGGGTGCTGGAATAACCTCCCTGTACTTCCTGTAAGTCTTCTTGCTGAACGGTatgtgttttctcttttaagaAAAAAGTAGCCTATAAAAACTCATTGTTAGTAATTTTGAAGTAGTGGAACTTTTTGTTTGTAACTATATTCGCTGTGTGGCAGTGgagagaaatgtaaatgtaaattataaactTGATTCAACACGTGGTCTAGTTTTGAATATTCTTTGAATGTCCATTAGCCGCGTTgctttacacatttataatgtaAGACTACTTTTTCATGAGGACAGATGAAAACAAGAAAATGGAGGCATTGGGAGGATTTTGCAGcagcttttatattttgtgttgtattattttatcgTTGCCAGCGAGCAACATCGTCTCagGTGTTGTGACGGTGGGTGGTAATGATCCTGGAAAAGAGTGTGTGTTCCCCTTCGTTTATGACAAGAATACATACTTTGAATGCACAACCATCAATAACAACCGCATCCCCTGGTGTGCCACAACCAGTGATTATCCTCAAGACAAGAAGTGGGGTAACTGTCCTTTTACAGGGCCTTCTACCACCGGTGGAAACAGTAATGGTGCACCCTGtcaatttccttttaaatacaaaaataagNNNN

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013478 False 660 mRNA 0.42 6 32423762 32455686
TU55641 False 494 TUCP 0.44 6 32423276 32429887
TU55642 True 740 TUCP 0.40 6 32423276 32429887

Neighbor

gene id symbol gene type direction distance location
AMCG00013479 LOC107735004,LOC107735469 coding upstream 33314 32346138 ~ 32389962 (+)
AMCG00013474 NA coding upstream 196719 32226171 ~ 32226557 (+)
AMCG00013472 NA coding upstream 433100 31988690 ~ 31990176 (+)
AMCG00013469 NA coding upstream 501901 31915101 ~ 31921375 (+)
AMCG00013465 NA coding upstream 650083 31772421 ~ 31773193 (+)
AMCG00013476 NA coding downstream 8410 32464096 ~ 32475750 (+)
AMCG00013481 NA coding downstream 34385 32490071 ~ 32494429 (+)
AMCG00013485 NA coding downstream 134042 32589728 ~ 32599218 (+)
AMCG00013487 NA coding downstream 149049 32604735 ~ 32608797 (+)
AMCG00013486 NA coding downstream 173241 32628927 ~ 32636264 (+)
G44620 NA non-coding upstream 137117 32286014 ~ 32286159 (+)
G44613 NA non-coding upstream 231881 32191179 ~ 32191395 (+)
G44598 NA non-coding upstream 284699 32136230 ~ 32138577 (+)
G44590 calm1,LOC102778633,LOC107670363 non-coding upstream 365650 32053733 ~ 32057626 (+)
G44581 NA non-coding upstream 392354 32030256 ~ 32030922 (+)
G44702 NA non-coding downstream 86949 32542635 ~ 32543676 (+)
G44747 NA non-coding downstream 199817 32655503 ~ 32655702 (+)
G44769 NA non-coding downstream 301052 32756738 ~ 32758380 (+)
G44790 NA non-coding downstream 381629 32837315 ~ 32837843 (+)
G44860 NA non-coding downstream 628042 33083728 ~ 33088760 (+)
AMCG00013477 ppp1r37 other upstream 22824 32393818 ~ 32400452 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other upstream 138325 32273268 ~ 32284951 (+)
AMCG00013468 NA other upstream 511475 31901530 ~ 31911801 (+)
G44325 NA other upstream 1646107 30776851 ~ 30777169 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other upstream 1855057 30563240 ~ 30568219 (+)
G44870 NA other downstream 650606 33106292 ~ 33106595 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other downstream 920834 33376520 ~ 33412841 (+)
AMCG00013516 NA other downstream 986708 33442394 ~ 33449093 (+)
G45029 NA other downstream 1239906 33695592 ~ 33699545 (+)
G45072 NA other downstream 1658987 34114673 ~ 34114939 (+)

Expression


Co-expression Network