AMCG00013486


Basic Information

Item Value
gene id AMCG00013486
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32628927 ~ 32636264 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013486
ATGATGCCAGTAGTTGTTTTCCTCACAGCGTCGGGCGATTTCACATTCCTCTGGGACAGTGGGTGCCGCCACAGGCTCACGGTCTCCCCCCAGCGGCCGGAGCTCGGCATGGCCGCGGACATGGCTCCCGGGGCTGCGAGCAGATCGGCCGCAGTGTCACACAAGAGCAGCAAGGAGCAGAGGGATTTCAGTGCCAGCCTTAGAGACATCGCCACCCTGCTGCCCGTCCCTGAGCCCAGCAGCACCCGCCTCCTCACCAAGAAAGAGACGTTGCTCCACATGCTGAGGTACCTGGACTTCCTGAAGAAGCACATCCAGACCCAGCAGAGCCTCCTGCCCACACACAGCCTGCCCTCCACAGGATGCGACAACCATGACGACCTTACCTCACCCCCGCACTCTGAACCACGCACCCCCCCAAGCTGCCTGAAGGCCAAACGCAAGAGTGTCTGTGGCCGCCCCCGCAAGAGGCCCCCCCACAGCACCGAGCCGTGGGTGGACATGAAGGACAAGAGGCGGAGACTGTTTGGGGTGGAGTCTGAAGAAGACAATATCCAGCCCAGCGTGGGGGCGGAGTCACTGGCCGAGTGGGGTGGAAGTGCTGATTGGCCCCCAGTGTCGCAGTCTGGCAGGAAGCAGGTGTGTCCTGTGCAGGACGGTGACACCTCCCTGTCCAGCTCCCTGGACTCTGAGCTGAGTCTCAGTCAGCTGTCCAGGTCGACTGATGAATCCCCACTTGGCCAGGAGCCCAGAACCCCAGGAGAGGACAGCCGATGTTctgcctgtgaggagagaacAGGCAGTGAGGAGGGCAGCCCTAGCAGTGGGGTCCTGGACTCCCCACAGCCCTCGTCTTGGGCTTGCCTTCTAAAAGATCACATGCTGGGGGGGTACTTCTCTTCGGATGAAGATGACCTCCTGGGATCCCCCCTTGACCAAACCCCAATGTTCCCCCTACACTGCCTCTCCCCGCCTTGCAGGGGGCTCAGGACTCTGGGGTTTCGGGACAGTCTGAACCTCAGCCCCTCCCTGCTCACCTCCCCAGCACGGGACATCCCCGTCAGCCTACTGCCTGAGGGACACGAGGAGCTGCAGGCCCTGTTTGAAGACGTGTGGGTCAGCCCCAACCCAACTGCCTCCAAGCCTCCAAGCCTGCCCTCCGGCCCCATCCCTGACTCGCTGCAGGAGTGTGACGGTGTGGCCGGGAGCAGCTGGCTGTCTTCCCAGagtgagggggaggaggggggcgACTTCACCTGGACCCCCACCCAGCGGGGCCCTGCGAGGGGCAGCAGGGGCCGACGCAGACAGCGGGCCACCAAAGGACATCTGCCCAGCCTGAAAAAGAAGTGTGTCAATGGATTTATCATGTTCTGCAGGCTCAACAGGAAGACCTACTTGCACTCTCACCCGGGCACCCCCTCCACTGTGGTCACCAAGGAGCTGGCCAGGCTCCCTCTGCACATGTTGCTGGCATGTAGACAGCTGTGCCTGGAGGTGGCGGGGCGGACGGAGCCTAAAGAGCCCACACAGGACTGA

Function

GO: NA

KEGG:

id description
ko05412 Arrhythmogenic right ventricular cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013486 True 1539 mRNA 0.63 12 32628927 32636264

Neighbor

gene id symbol gene type direction distance location
AMCG00013487 NA coding upstream 20130 32604735 ~ 32608797 (+)
AMCG00013485 NA coding upstream 29709 32589728 ~ 32599218 (+)
AMCG00013481 NA coding upstream 134498 32490071 ~ 32494429 (+)
AMCG00013476 NA coding upstream 153177 32464096 ~ 32475750 (+)
AMCG00013479 LOC107735004,LOC107735469 coding upstream 238965 32346138 ~ 32389962 (+)
AMCG00013490 NA coding downstream 6181 32642445 ~ 32656154 (+)
AMCG00013491 akt2 coding downstream 56910 32693174 ~ 32711904 (+)
AMCG00013492 NA coding downstream 78160 32714424 ~ 32724784 (+)
AMCG00013493 NA coding downstream 116508 32752772 ~ 32756003 (+)
AMCG00013495 itpkc,LOC102792490,LOC102297313 coding downstream 165985 32802249 ~ 32829019 (+)
G44702 NA non-coding upstream 85251 32542635 ~ 32543676 (+)
G44620 NA non-coding upstream 342768 32286014 ~ 32286159 (+)
G44613 NA non-coding upstream 437532 32191179 ~ 32191395 (+)
G44598 NA non-coding upstream 490350 32136230 ~ 32138577 (+)
G44590 calm1,LOC102778633,LOC107670363 non-coding upstream 571301 32053733 ~ 32057626 (+)
G44747 NA non-coding downstream 19239 32655503 ~ 32655702 (+)
G44769 NA non-coding downstream 120474 32756738 ~ 32758380 (+)
G44790 NA non-coding downstream 201051 32837315 ~ 32837843 (+)
G44860 NA non-coding downstream 447464 33083728 ~ 33088760 (+)
G44861 NA non-coding downstream 452552 33088816 ~ 33090427 (+)
AMCG00013478 NA other upstream 173241 32423276 ~ 32455686 (+)
AMCG00013477 ppp1r37 other upstream 228475 32393818 ~ 32400452 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other upstream 343976 32273268 ~ 32284951 (+)
AMCG00013468 NA other upstream 717126 31901530 ~ 31911801 (+)
G44325 NA other upstream 1851758 30776851 ~ 30777169 (+)
G44870 NA other downstream 470028 33106292 ~ 33106595 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other downstream 740256 33376520 ~ 33412841 (+)
AMCG00013516 NA other downstream 806130 33442394 ~ 33449093 (+)
G45029 NA other downstream 1059328 33695592 ~ 33699545 (+)
G45072 NA other downstream 1478409 34114673 ~ 34114939 (+)

Expression


Co-expression Network