AMCG00013488


Basic Information

Item Value
gene id AMCG00013488
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32622153 ~ 32627904 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013488
GCGGGAGGGCGGGACTGGGACAAATGTGCCTGCAGAAAGCCAGTTTAATGAAGCCCTCGCCCTGCTGCGGCTGAATCCCCGAGTCGCGTCTCTGTGTGCAACCAGCCCGGTGCCGGCGAAGTGGGAAAGGAGGACGACCACCCCGTCCCTCTGCCTCACCCCCCTGCTCCGCCTGCCTGGACCCAACCGTCAGCACGGAGAAGTGGTAGATGTTCCATGTTGAGTTCTGGTACAGTCACCATGGGGATGAGCGCCCACAGCCAGCACGTGCTGCGGCAGCTGGCAGCCCAGCTGGAGTTCGGTTTCCTGTGTGACGTCATCGTGAGCATCGGGGACGTCCACTTTCGAGCACACCGGGCTGTGTTGGCGGCCTGTAGTACCTACTTCCACAAACTATTTGTCAGCCAGCCCGCGATGGCCAGCCGTGCCCACACCAGCTACACTCTGAGCCCTGAGCTGGTGCGGCCGGAGCACTTCGACTTAATCCTGCAGATGATGTACCACGGGCTGCCGGAGCCTCCACCCCCTGCCAATGACTCAGCCGGCCTGCGTACCTCCATGGCCTTTCTGGAGTTCTACACCCTCCCTCCGCTGCAGGGCGAAGGGTCGGCCCAGACTGGCAAGAGCTGTCTGCAGTATGGTGTGGAGGTCTGTGAGCAACctcaggaggaggagggggagggaggagagagggaggcaggggtTGGCCTGTTGGGAGGTCAGAGCTCCAACTGCTTTCTGTACTCCCCTGATGGAGTGGTTGAGGCCAATGTCCGCAGCCGCATGACTGAGCAGGCCCTGCAGGGGGAGGTGGACAGGGAGCAGGGAAAGGactcttccttctcctcctcctcctcctcctcctcctcctcctccacatcttcctcctcctcttcctcctcctcatccctgCCCTCTTCCCCACTCTCTGCCTCTCCCAGCCCTCAGCCAAACTCCTGGGCTCAGCGCCTGAAGCCCACCTCTTCCTCTGGCCCAGTGAAGAGTGAGCCCCCGGACAGCCCCAGCTTTCTAGAGCTCCATGGCATCAAGGTGGTGCAGGTGGTCCCAGTAGCCCACCAGCAGACCAGCACCACCAGCACAGTGGAAGAAGGAGAAGTCACTGGCCCAATAGTGTCTATACAAAATGGGTTCCTCCAGACCCAGCCCATGTTGATCAAGCCAGATCCTCATGGGTCTTCCAGTCCGATACTTGGGCAGAAAGCTGGTgttggaggaggaggggggagggcAGGCAGTGGGGGTGAGCCCCTGCAGCCGCCTACTGCCAAGTGTATGCAGTGGGCCTGGATGGGGAAGAGTGTCCTCCTGAGCACACAGCCTGGGTCCAGcccccctgcctccctcccccacAAACCAAGGTCATCGGCCTCCCAGAAGCCCAAGCCCATCCTGCTGACATTGAACAAGAAGCCGGACACCCCCGCGCCACCACCCTTCTTTCCCTGCACACGCTGTGAGCTCAGCTTCGACACCTCGTGTGCTCTGGAGGAACACCTGGTGGGCTGTGGGCGGAAGCGGCCCGTCCGGCATCGCAAGGTCCCTCAGTGGCTGCAGCGGAGCCCCTCACACCTGCCCCCAGCGTCCCCTTCCCCTGCCCCAGTCTCACCCAGCTCGGTGGAGGTGGAACTGGAGGATCCTTCGGTTGTGGTCAGCTGGCCGCCCGTTGGGCACCAGTGCTGCAAGACCTGTGGCAAGTTCTTCAAGAGGGCCAAGATGCTGCAACTGCACCGCCCACGCTGCCCTGGTGCCGTCCCCCTTTCCCGGGCCCGCTCCGAAGCCCGCAACCATGTGTGCAACGTCTGCGGCAAGGCCTTCCTACAGCGTGGGCACCTGATGGAGCATGAGGCCACGCACAGCCACATCAAGCGTTTCTCTTGCCAGTCCTGCGACAAGCAGTTTGTGCGCCGACGGGAGCTCAAGGTCCACGAAGCCCGGCATGTGGGCCAGGCCACCTACCACTGCCAGTTCTGCGGTCACGCCAGCTACCGCAAAAACGGCCACTACCACCATCTCACCACACACATCACCAAACCCAAAGTCATCTGCCAGGGTTGCTTTCATATCTGCGAGAACCCAGCCCAGCTTAAGGAGCATGAGATGGAACACCGGCACATGTGCGAGCACTGCGGCGCTAAGTTCCGCCTCAAGAAGGAGCTGGCCAGGCACTTTGCCAGCTGTGAGAGCATCACAGAGGGCTATGACGCCTGAGGGGCTGAAGAGGGATGGGGACTTTGGGAGGCagggtctgtgtctgtctctgagGGAAGTTGGGATTGTGTCTTGTAGGGGGAATTTTGTTTGGAGTCCAGTAGAAATGGAACACTTACATTTTCCGTTGTAGTTTTATGTGGACATCGGTATCTGTCTCTTTGAGGGGCAAGGACTTTTAGGATGTGTTCTCTCACATCTCACAGGTTtgctttaaattacttttttttaggACTGAGTCATAGAACTGTCTGcggataaataataatttgggatAATTCACCATGGCTGTGGTGAGAATATGTAAATAAGGGACAACAAGTGTTGTCCACATTTAGACCGAAAGAGACTAGTCTGCTCCATATTGAGATGCAAGCGAAAGGCATTAAAAGTATTGAAATTCAGTATTTACAGtgatgtgaaatgaaaagagGGAGATtccaaatttttattttttatctttctgAAACACTTTGTTAAAATGATCATAACCATCACTTTTTCCAAGCTAATGAATACTGTCccctctgttttattttttcccccctcagtTATGTGGTCACTAAGTGAAAATTGCTAAAGCAAAACTGTGAGGTTCAGGCAGAGAAACAACATCAGCATGCTAAGCTGGTATGTGGGGCCTGAAGCTCCGGCCTGGTCTGTCACTACTGTAAACCAGAGAGACCGCTCCTGCATTAGAGCTCTGTATAGTTTCCCCAAAGGCAACAAACTGCTTCTGACTCTGGCTTTAGTTCCCATGGACATACTGATTCATATTGAATGGATAGATTGTGTCTGGCCCAATCCACACTTGTTCATATTGAACCCTGCTAGTGAAACTGGGCTGGCACACATTTCACAGAGTGAACCAACAACCAATGCAGTGGTATTCACCTTTCCTGTAAAGCTGGGTTACTACATGGCAAGGGGGTGGCCTCCACTGCTCTAGGGAAAGGATGCTCAGACTGGCTCTCTGGCAGTCTCAAGTGAGCTAACATCCGAAGCTTGAGCTTTGACCCTCACAGCACAACATAGTAATGCTGACATTGACTGAAGGATGAAGCTTGTGATTCCAAAAAATCTGCACTTATTTGTTatatgtacaattattattaaactgttaaactgtGTACTTTTGTTTCTCctaagaattttttttt
>TU55769
TCACCCAGCTCGGTGGAGGTGGAACTGGAGGATCCTTCGGTTGTGGTCAGCTGGCCGCCCGTTGGGCACCAGTGCTGCAAGACCTGTGGCAAGTTCTTCAAGAGGGCCAAGATGCTGCAACTGCACCGCCCACGCTGCCCTGGTGCCGTCCCCCTTTCCCGGGCCCGCTCCGAAGCCCGCAACCATGTGTGCAACGTCTGCGGCAAGGCCTTCCTACAGCGTGGGCACCTGATGGAGCATGAGGCCACGCACAGCCACATCAAGCGTTTCTCTTGCCAGTCCTGCGACAAGCAGTTTGTGCGCCGACGGGAGCTCAAGGTCCACGAAGCCCGGCATGTGGGCCAGGCCACCTACCACTGCCAGTTCTGCGGTCACGCCAGCTACCGCAAAAACGGCCACTACCACCATCTCACCACACACATCACCAAACCCAAAGTCATCTGCCAGGGTTGCTTTCATATCTGCGAGAACCCAGCCCAGCTTAAGGAGCATGAGATGGAACACCGGCACATGTGCGAGCACTGCGGCGCTAAGTTCCGCCTCAAGAAGGAGCTGGCCAGGCACTTTGCCAGCTGTGAGAGCATCACAGAGGGCTATGACGCCTGAGGGGCTGAAGAGGGATGGGGACTTTGGGAGGCagggtctgtgtctgtctctgagGGAAGTTGGGATTGTGTCTTGTAGGGGGAATTTTGTTTGGAGTCCAGTAGAAATGGAACACTTACATTTTCCGTTGTAGTTTTATGTGGACATCGGTATCTGTCTCTTTGAGGGGCAAGGACTTTTAGGATGTGTTCTCTCACATCTCACAGGTTtgctttaaattacttttttttaggACTGAGTCATAGAACTGTCTGcggataaataataatttgggatAATTCACCATGGCTGTGGTGAGAATATGTAAATAAGGGACAACAAGTGTTGTCCACATTTAGACCGAAAGAGACTAGTCTGCTCCATATTGAGATGCAAGCGAAAGGCATTAAAAGTATTGAAATTCAGTATTTACAGtgatgtgaaatgaaaagagGGAGATtccaaatttttattttttatctttctgAAACACTTTGTTAAAATGATCATAACCATCACTTTTTCCAAGCTAATGAATACTGTCccctctgttttattttttcccccctcagtTATGTGGTCACTAAGTGAAAATTGCTAAAGCAAAACTGTGAGGTTCAGGCAGAGAAACAACATCAGCATGCTAAGCTGGTATGTGGGGCCTGAAGCTCCGGCCTGGTCTGTCACTACTGTAAACCAGAGAGACCGCTCCTGCATTAGAGCTCTGTATAGTTTCCCCAAAGGCAACAAACTGCTTCTGACTCTGGCTTTAGTTCCCATGGACATACTGATTCATATTGAATGGATAGATTGTGTCTGGCCCAATCCACACTTGTTCATATTGAACCCTGCTAGTGAAACTGGGCTGGCACACATTTCACAGAGTGAACCAACAACCAATGCAGTGGTATTCACCTTTCCTGTAAAGCTGGGTTACTACATGGCAAGGGGGTGGCCTCCACTGCTCTAGGGAAAGGATGCTCAGACTGGCTCTCTGGCAGTCTCAAGTGAGCTAACATCCGAAGCTTGAGCTTTGACCCTCACAGCACAACATAGTAATGCTGACATTGACTGAAGGATGAAGCTTGTGATTCCAAAAAATCTGCACTTATTTGTTatatgtacaattattattaaactgttaaactgtGTA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03430 Mismatch repair
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013488 True 3389 mRNA 0.55 4 32622153 32627904
TU55769 False 1738 TUCP 0.49 1 32622181 32623918

Neighbor

gene id symbol gene type direction distance location
AMCG00013489 NA coding downstream 1215 32609881 ~ 32620938 (-)
AMCG00013483 NA coding downstream 40850 32572426 ~ 32581303 (-)
AMCG00013484 clptm1,LOC107582636 coding downstream 56799 32545177 ~ 32565354 (-)
AMCG00013482 NA coding downstream 82327 32521650 ~ 32539826 (-)
AMCG00013480 NA coding downstream 210285 32408373 ~ 32411868 (-)
AMCG00013496 NA coding upstream 205943 32833847 ~ 32836598 (-)
AMCG00013507 NA coding upstream 468735 33096639 ~ 33108496 (-)
AMCG00013508 map3k10,LOC102787573,LOC107756783 coding upstream 494068 33121972 ~ 33122871 (-)
AMCG00013506 NA coding upstream 502150 33130054 ~ 33143388 (-)
AMCG00013511 NA coding upstream 618260 33246164 ~ 33263876 (-)
G44703 NA non-coding downstream 78476 32542648 ~ 32543677 (-)
G44668 NA non-coding downstream 180782 32433288 ~ 32441371 (-)
G44651 NA non-coding downstream 238223 32316180 ~ 32383930 (-)
G44623 NA non-coding downstream 336175 32285055 ~ 32285978 (-)
G44615 NA non-coding downstream 428688 32193227 ~ 32193465 (-)
G44748 NA non-coding upstream 27621 32655525 ~ 32655725 (-)
G44749 LOC105030512,LOC106609167,LOC106584099 non-coding upstream 28801 32656705 ~ 32657232 (-)
G44777 NA non-coding upstream 128860 32756764 ~ 32758330 (-)
G44803 NA non-coding upstream 225352 32853256 ~ 32853765 (-)
G44815 clasrp,LOC102789808 non-coding upstream 306163 32934067 ~ 32938173 (-)
G44719 NA other downstream 54201 32565760 ~ 32567952 (-)
AMCG00013425 NA other downstream 1879510 30730287 ~ 30742643 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other downstream 2135822 30483305 ~ 30486331 (-)
AMCG00013412 NA other downstream 2139827 30468630 ~ 30482326 (-)
AMCG00013409 LOC107590438 other downstream 2158062 30455727 ~ 30464091 (-)
AMCG00013518 NA other upstream 840945 33468849 ~ 33501747 (-)
G45037 NA other upstream 1050320 33678224 ~ 33678907 (-)
AMCG00013531 NA other upstream 1064940 33692844 ~ 33699712 (-)
AMCG00013578 NA other upstream 4251289 36879193 ~ 36885493 (-)
G45468 NA other upstream 4331273 36959177 ~ 36959914 (-)

Expression


Co-expression Network