AMCG00013492


Basic Information

Item Value
gene id AMCG00013492
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32714424 ~ 32724784 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013492
GGGGCCTTCccccacattttgttttgtttattatcctTCCGGCTGGTCGGCGCTCAGGCTCGGTGTTTGGGGGTCGGTCCGCAGGCTCGCTCCGAAGAAAAATCGTCCCCCGCCATGGCTCGAGCCAGCCTTTGCGACCCCCGCTCAATGCTCGACCCACACAAGAAGCCGGAAGAGAAGAGAGCACCGCTGAAGAACTGGGCCAACACCTACAACACCAAAGAGCGACGAGCACaggtggaggaagaggaggaggagatgttACTGCCCTGCAAGCCGGAGCCAGAGAGGAGGCGGAGCAGGAGGCTGCCTGTCTGCGAGGAGGACGGCATTGTCATGGGATATGCAGAACAAAATGGATGTGGTCAAATGGAAGAACGGGAAGGCAGCGGCCTGATCCTCCGGCTGCACGGCCTGAGTGTCAGTGACCACTGCGTGCTGCGCAGGGAGTTGGAGGCAGCCATGGAGAAGCTGGGCCTCACCTTTGAGAAGATCTATGCTTGGGACATCTTCCTGGCCATGATGAGGAAGCAGTCTTGCTACACACTCCAGAGCGCAGAGCTGCCGAGTGGTTTCACAAGCTACACCAGAGCCATAGTGGTGGACTGGCTGATACAGGTCCATGATGCCTTCCACTTCTGTGAGGAAACTCTCTACCTGGCCGTTCACCTGCTCAACAAGTTCATGAGGCGCCCCAAGGTCTCTTTCTCCACCTTCCAGCTGCTGGGTATGGTCTGCCTCTTCATCGCCAGCAAGAAGGAGGAGTGCCTGCTCCCAGAGGTGTCTGAACTGTGCTTTCTGATGGAGAATACCTACAGCAAGAAGCAACTGCTGCGCATGGAGAGGAAGGTGCTGATGGAGCTGCACTTTGACCTGTCCTACTGCCACCCATTGCACTTCCTGCTGCTGAATGGCGCTATCGCACATAGCAGCGCACAGGTGCTGTGGATGGCACAGTATCTCCTGGAGCTGAGTCTGCTGGAGGTGCAATTTGTGGTGTTTGAGCCAGTACAGCTGGCTAGTGCTGCCCTGTGCCTGGCGTGCAGGGTACTGCAGGAGCCAGCCAGCCTGGAGTGCGAGACGGCCTGGCTCACTGCACGCAGCCTCTTCATCTGCAGCGAGCGTGTGGTCCGGCGGGTCATGCAGGCCATGGCTCGGGCAGCGGCCAGGGTGGGGGCCTCGGAGACCCGCACCACCTACCTGAAGTTCTCCACCATGGACAGGTTGCAGGTCAGCATGCATCCGGCCCTGCACAGCTCCCCACTCCTCCTGGAGCTCCTCTGACAGTGCCACCCCCTGCCACAGCCCCTGGACACACACTCGCTTTCAAGGAGTGACTCCTGcaattgatttttttcattttttacttgaTGCCCGTCCAGCTTCTGCAACACCCTTGCCATCTGAACTCAATTATGAATCTAAAGAAGTGACGTGCCCTGGCATTGCTTAATTTTCCAGTGTTTTCCTAGGTAACCCTGCCTTGAATcctatatgttttaaaatttaCTGTGTAACAGTTAATGcaatgcagtttaaattaacTATAAACTGAAAAGCTTTAAGGCTTTATTGTCATGCTTCCTATTGGCTGTTTACTGATGCAGTGTGCAATCTAATCCCTGACGGAGTGACAGTTTTTAAATGCTCCATTTTGCATCCATTTTTGTCTACACCACTGTGCAggtccccccacacacatttgCCTTATGATCCAGAATAGTAACTGTTCCTCTCTGCTCACTGTTCTCCTTGTCTAGCAGGGTCTGTTCAGTGTTGCTCCAAGTAATCATTTGGCTTTATTTATCCCTTTTATGATCCCTTATGTAATCCTCATTTTTTTTGGCTTTGTATGGTCTAATGACCTTTGTGGTAATTGTGAAATGATAAATAATTCCCACGTTGAAAAGTGGGCTTTATTAGAGGTGGTAGTTGCATTTGATTTCTCACTCTCATCCTACTATTCTTAAATCCATTTCCTTTCATTGTACTGAGATCTGCTACATACCTGTTCCACCAAAATTACCCCTTTCGTGCCCTTTTCCCAAAATTTGATTCAGGGAAGGGATTTCAGAAAGTATGCCATTGCATGAGATAACTAATTAATTGCAAAACTAATTAAGCATCCTCACATAAGTAGCTCTCATTGTTTTCTGAAGTCTGTTCAGTGGCTCTTATTTTCTGGATTAGTATAATTTATAAGGACcttaaattgcttaatttacACCACAACATATTGTCTTATTTGTAACTTGtgtaaaactatttatatgGATGCTGTCATTGTAAcgtttttaagtgttttgtaaGGTTTCAGCTTGTCTGAACTTGTTAGAGAATTTtatgaatgttaaaataaaaaaaaaaaaatgtaatgtctgaaAACCATTAAAgctgaatttattttgtta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013492 True 2411 mRNA 0.48 9 32714424 32724784

Neighbor

gene id symbol gene type direction distance location
AMCG00013491 akt2 coding upstream 2520 32693174 ~ 32711904 (+)
AMCG00013490 NA coding upstream 58270 32642445 ~ 32656154 (+)
AMCG00013486 NA coding upstream 78160 32628927 ~ 32636264 (+)
AMCG00013487 NA coding upstream 105627 32604735 ~ 32608797 (+)
AMCG00013485 NA coding upstream 115206 32589728 ~ 32599218 (+)
AMCG00013493 NA coding downstream 27988 32752772 ~ 32756003 (+)
AMCG00013495 itpkc,LOC102792490,LOC102297313 coding downstream 77465 32802249 ~ 32829019 (+)
AMCG00013494 snrpa coding downstream 113401 32838185 ~ 32843351 (+)
AMCG00013497 NA coding downstream 128842 32853626 ~ 32876130 (+)
AMCG00013500 NA coding downstream 163370 32888154 ~ 32917516 (+)
G44747 NA non-coding upstream 58722 32655503 ~ 32655702 (+)
G44702 NA non-coding upstream 170748 32542635 ~ 32543676 (+)
G44620 NA non-coding upstream 428265 32286014 ~ 32286159 (+)
G44613 NA non-coding upstream 523029 32191179 ~ 32191395 (+)
G44598 NA non-coding upstream 575847 32136230 ~ 32138577 (+)
G44769 NA non-coding downstream 31954 32756738 ~ 32758380 (+)
G44790 NA non-coding downstream 112531 32837315 ~ 32837843 (+)
G44860 NA non-coding downstream 358944 33083728 ~ 33088760 (+)
G44861 NA non-coding downstream 364032 33088816 ~ 33090427 (+)
G44865 NA non-coding downstream 369518 33094302 ~ 33095508 (+)
AMCG00013478 NA other upstream 258738 32423276 ~ 32455686 (+)
AMCG00013477 ppp1r37 other upstream 313972 32393818 ~ 32400452 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other upstream 429473 32273268 ~ 32284951 (+)
AMCG00013468 NA other upstream 802623 31901530 ~ 31911801 (+)
G44325 NA other upstream 1937255 30776851 ~ 30777169 (+)
G44870 NA other downstream 381508 33106292 ~ 33106595 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other downstream 651736 33376520 ~ 33412841 (+)
AMCG00013516 NA other downstream 717610 33442394 ~ 33449093 (+)
G45029 NA other downstream 970808 33695592 ~ 33699545 (+)
G45072 NA other downstream 1389889 34114673 ~ 34114939 (+)

Expression


Co-expression Network