AMCG00013493


Basic Information

Item Value
gene id AMCG00013493
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32752772 ~ 32756003 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013493
ATGCCACAGGAGAAGCAGTGCCCAGGGGAGCGGCCTGTCCGTAGCGACAGCAAGAATGCCAAGGAGAAGAGCAACAGTGCCGCTCTGAGGGCTGAGCACGGGGCAGGCGGCCTGGGGCATGTGAGGGGCCGCAACTCCCGTTGCGAATCAGAGAAGGACTCGGGATACTCCGATGGCGGCTCTGACTGCCTGCAGACTGACTCGGAGGACCAGCGCAGCAGTGTGAGCCAGCGCTGTGGCCCCCCAGtgagcaggggggtggggggaggagcACCCCAGAGCACCGCTACGTTTGGAGAGTTCACCCCCATCTACATCGTCAAGAACCTAGTCCTCAAACAGCCCCTTACACTGCAAGCCAGCACTGATCAGACCCTGAACACCCAGCTACCATGGGGTGGTGGGCCACACAAGGCGAGTGCAACCAATGGACAACCTGCCACACAGCTGCTCTTTATCCAGCAGCCAACCACTGCTGCCCCTTCCCCCGCCCCCACCCTGCTCAAGCCCCTGCCCAAAAAAGTGTGCAAAGACACCTACTTACCCATCCTCAACTCCTACCCCCGTATTGCCCCACACCCCAGCAAGTCCCTGGATCCAGCAAAGAGTAGCAATGCAGGCAAACCCGGGGGCACCAGTCTCACTGAGGGATCTCTGGGCCACCGGCAGAGCAAGCGCGTGTGCATGGAGGAGCGGAGGGAGGCGGTGTCGTCTTCAGAGCTCCCTAGAAAGGAGCCGCCCAAGCAGCCGGGCCACCAGTCCCCGTCTGCCCCCCCGAACAAAGCCCCCAGAGTTCACCAGCCAGCCCAGCCCCCTCCGAGTGCCCTGCCAGCCAGCCCTGCTGAGTCCTCCAGCCTGGGATCCCCGTCCGTGTCCAGCTCAGAAACGCCTGTGACTAAGGTGTCCAAGAAGCACGTCTCCAACGTGGTGAAGCAGCGGCGCTTCCTCAACACTGTGGAGATCCTCAGCCACTCCGGCCTGCTGGGTATCACGCTGAAGACCAAAGACTTGATCCGCCAGAACCACAGCACCAAGCGCGAGATTGCCGAGCTGCGTGAGCACACCCGCCTTCTCTGCCAGGCTGTCCACTCCAATGACCCCCAGGCCTGGGCTCAGCTGCAGGAGGCCATGGCAGCGTCCGGCCACTACCCCGACCTCAACAAAGGTCTTGGCCCTGTCAGCCTGGACATCCAGGTCAAAGACCCTGCCCCTCCCCAGACTGCCCCCGGCCTGGCCTTGGAGTGCACtagcaccccccccacaccctccttctcttcctccccGGCCTGCGTGATAGACCTGAGCCGAAGACGAAGGAAGAACATGTCCCCACTGAATGTACCACCTGACAGCTCCACCCATGCCTGCCTGCCTTAA

Function

GO: NA

KEGG:

id description
ko04710 Circadian rhythm

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013493 True 1377 mRNA 0.63 3 32752772 32756003

Neighbor

gene id symbol gene type direction distance location
AMCG00013492 NA coding upstream 27988 32714424 ~ 32724784 (+)
AMCG00013491 akt2 coding upstream 40868 32693174 ~ 32711904 (+)
AMCG00013490 NA coding upstream 96618 32642445 ~ 32656154 (+)
AMCG00013486 NA coding upstream 116508 32628927 ~ 32636264 (+)
AMCG00013487 NA coding upstream 143975 32604735 ~ 32608797 (+)
AMCG00013495 itpkc,LOC102792490,LOC102297313 coding downstream 46246 32802249 ~ 32829019 (+)
AMCG00013494 snrpa coding downstream 82182 32838185 ~ 32843351 (+)
AMCG00013497 NA coding downstream 97623 32853626 ~ 32876130 (+)
AMCG00013500 NA coding downstream 132151 32888154 ~ 32917516 (+)
AMCG00013498 clasrp coding downstream 171813 32927816 ~ 32947713 (+)
G44747 NA non-coding upstream 97070 32655503 ~ 32655702 (+)
G44702 NA non-coding upstream 209096 32542635 ~ 32543676 (+)
G44620 NA non-coding upstream 466613 32286014 ~ 32286159 (+)
G44613 NA non-coding upstream 561377 32191179 ~ 32191395 (+)
G44598 NA non-coding upstream 614195 32136230 ~ 32138577 (+)
G44769 NA non-coding downstream 735 32756738 ~ 32758380 (+)
G44790 NA non-coding downstream 81312 32837315 ~ 32837843 (+)
G44860 NA non-coding downstream 327725 33083728 ~ 33088760 (+)
G44861 NA non-coding downstream 332813 33088816 ~ 33090427 (+)
G44865 NA non-coding downstream 338299 33094302 ~ 33095508 (+)
AMCG00013478 NA other upstream 297086 32423276 ~ 32455686 (+)
AMCG00013477 ppp1r37 other upstream 352320 32393818 ~ 32400452 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other upstream 467821 32273268 ~ 32284951 (+)
AMCG00013468 NA other upstream 840971 31901530 ~ 31911801 (+)
G44325 NA other upstream 1975603 30776851 ~ 30777169 (+)
G44870 NA other downstream 350289 33106292 ~ 33106595 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other downstream 620517 33376520 ~ 33412841 (+)
AMCG00013516 NA other downstream 686391 33442394 ~ 33449093 (+)
G45029 NA other downstream 939589 33695592 ~ 33699545 (+)
G45072 NA other downstream 1358670 34114673 ~ 34114939 (+)

Expression


Co-expression Network