AMCG00013494 (snrpa)


Basic Information

Item Value
gene id AMCG00013494
gene name snrpa
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32838185 ~ 32843351 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013494
CGCAGTTTGGATAAACTGAGTAGCAATCGGTAAGTATATCTCTCTTAAAATGAACCATCATGTAATTTCTCGACGTTATGTCCCTTTGTTGATGTTTGCGTTACAAGTATCAGTGGCTATTTGTAGCGCTTTCATGTGTGTAtcttaataaaacaattgtagATACATGAATGAACTCTGCTCAGCTAGCTCGCTAATCGTTTGTTTTAGCAACGTCCGGACAACAATGCAATGTCTAAGAGCACACATTATCAATATGTATCTAACATGCATAGTTGCTGGTTTATTAAAATTTCAGTTGAGCTACTGGTAGTTAAACGATTTAAGCTGTCTTGTCCATATCAGGAAGTCGATGAGCTGAGCGGGAGAATCCATTGCTCCTTCGCTGGGATCAGAGCGGTGAATCCGTCGACACATACCTCCTTATTCTAGACCTCTATCGCATTGCTGCATCTGCTCCCGTTTCCTCGGAGGCCATGGCTGGACAGGAGCTTCGGCCGAACCACACCATTTACATCAACAACCTCAATGAGAAGATCAAGAAGGATGagCTGAAGAAGTCCCTGTACGCCATCTTCTCCCAGTTCGGCCAGATCCTGGACATCTTGGTGTCGCGTTCCTTGAGGATGAGGGGCCAGGCCTTCGTCATCTTCAAGGAGCGCATCCAGTACTCTAAGTTGGACTCTGACATCATCGCCAAAATGAAGGGCACCTACGTGGAGCGCGACCGcaagaaggagaagaggaagggcAAAGAGATGGTGGGCGGAAAGAAGGGAATGCCGGGAGCTCCAGCACAGATGGCCCCAGGGGTGCCCACACCCATGCCTGGCATGCCACCGATGAGCCAGGCTCCACGCATGATGCCCATGCCTGGTCAGCCCCCGTACATGCCCCCGCCTGGCATGATGCCCCCACCAGGGATGGGACCTGGACAGATGCCTCCTGGAGCCATGCCCCCTGGCCCGATGATGCCAGGACAGATGCCCGGACAGATGCCTCATGCCCAGGTGCCTGAGAATCCACCAAACCACATCCTGTTCCTGACCAACCTGCCTGAGGAGACCAACGAGCTGATGTTGTCTATGCTCTTCAATCAGTTCCCTGGCTTCAAAGAGGTGCGCCTGGTCCCCGGGCGGCATGATATTGCCTTTGTAGAGTTCGACAACGAGGTGCAGGCAGGGGCGGCCCGCGAGGCACTGCAGGGCTTCAAGATCACGCAAACCAACGCCATGAAAATCTCCTTTGCCAAGAAATAACCCCCTGACAGGACGTCTGCCAACACAGGGGTCCGGCCTCCTTGTAGTGTTATGCGATAGGGTGAgcttttaaaaaccaaaaacataaaacgatcaggagaaaaaaacagaacaaagatgCTCGGTACAGGTAAGAAGGGTGATGGCGCAGCAGCATCGGACAGAAGCGCCCTCCTGACTGCTGCACAGGTATTTGTGTCAGTGCAGCTGATTTTCaactatatattttagttttgttcctccCAACCCCAGTCAGCCCCTTGCTATTGCAGcttaaatcacaaaaaagtGACCTGTTGACCACCATTCCTGTCTTTGATTTGTgggttacaaaaaaatacatttttaaatcgtATTTATTACATATACCCTCCTCCTCATTCAATGCAAGTCTTAGCCTTCCTCTAACAGATTTGCACTGCCCCCCACCATCTCTGCTCAGGTCAGGAATGCTACTGTTCGGTAGTTCCTATGCTCAGGTTCAAACCCCCTCCCTCCACTTCAGTTTGGGTTTGAATGTCccagtcctgctgctgctggatcCAACATCTGAGCTGCGGAGTGGAATAAGTGACAGCTTCTCTTTTGAAGGGGAGAGTACTGGGGGAGGAAGAGTTTGGTAATAGGCCTTCGTATCCAACTCTTTAACAGGGGGGGCCAGGTGTTGCCTTGCAGTTTGGCCCACACTCTCCAGCCTGCTCTTTATCTGCATTGTGactgtggtttttatttttattttcttgtacagTTCTGATTTTTGAAGCATTGCACCCAGAGTCTGGCCATCAGACATTGTACCTGGAGCTTTCTGTATTTGATTAAAAGTTTTTATATGCTGTATTTTGTCCTGCTGTTTTGAATTTTCTGCTCATGTTACCCTGACTTAAAAAAACCTTCCCTTTAAAAGACTGCCTttgtaaatgcacattttgcTAACCCATTTGATCTATATTGATATTAAATATAAGCTTTCCTCTTATTTTCCAAGAGGAAATGCTGCTGTCCCAACAGTACTGCTTCTGCTTTTTTGACATGCCAGGATTTTAAGCAAGGAAAAT

Function

symbol description
snrpa Predicted to enable U1 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of U1 snRNP. Human ortholog(s) of this gene implicated in connective tissue disease. Orthologous to human SNRPA (small nuclear ribonucleoprotein polypeptide A).

NR:

description
U1 small nuclear ribonucleoprotein A

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0017069 snRNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K11091 SNRPA; U1 small nuclear ribonucleoprotein A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013494 True 2317 mRNA 0.48 7 32838185 32843351

Neighbor

gene id symbol gene type direction distance location
AMCG00013495 itpkc,LOC102792490,LOC102297313 coding upstream 9166 32802249 ~ 32829019 (+)
AMCG00013493 NA coding upstream 82182 32752772 ~ 32756003 (+)
AMCG00013492 NA coding upstream 113401 32714424 ~ 32724784 (+)
AMCG00013491 akt2 coding upstream 126281 32693174 ~ 32711904 (+)
AMCG00013490 NA coding upstream 182031 32642445 ~ 32656154 (+)
AMCG00013497 NA coding downstream 10275 32853626 ~ 32876130 (+)
AMCG00013500 NA coding downstream 44803 32888154 ~ 32917516 (+)
AMCG00013498 clasrp coding downstream 84465 32927816 ~ 32947713 (+)
AMCG00013499 NA coding downstream 107964 32951315 ~ 32963942 (+)
AMCG00013502 NA coding downstream 134580 32977931 ~ 32996084 (+)
G44790 NA non-coding upstream 342 32837315 ~ 32837843 (+)
G44769 NA non-coding upstream 79805 32756738 ~ 32758380 (+)
G44747 NA non-coding upstream 182483 32655503 ~ 32655702 (+)
G44702 NA non-coding upstream 294509 32542635 ~ 32543676 (+)
G44620 NA non-coding upstream 552026 32286014 ~ 32286159 (+)
G44860 NA non-coding downstream 240377 33083728 ~ 33088760 (+)
G44861 NA non-coding downstream 245465 33088816 ~ 33090427 (+)
G44865 NA non-coding downstream 250951 33094302 ~ 33095508 (+)
G44867 NA non-coding downstream 257123 33100474 ~ 33100687 (+)
G44868 map3k10,LOC107554498,LOC107560156 non-coding downstream 259288 33102639 ~ 33102873 (+)
AMCG00013478 NA other upstream 382499 32423276 ~ 32455686 (+)
AMCG00013477 ppp1r37 other upstream 437733 32393818 ~ 32400452 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other upstream 553234 32273268 ~ 32284951 (+)
AMCG00013468 NA other upstream 926384 31901530 ~ 31911801 (+)
G44325 NA other upstream 2061016 30776851 ~ 30777169 (+)
G44870 NA other downstream 262941 33106292 ~ 33106595 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other downstream 533169 33376520 ~ 33412841 (+)
AMCG00013516 NA other downstream 599043 33442394 ~ 33449093 (+)
G45029 NA other downstream 852241 33695592 ~ 33699545 (+)
G45072 NA other downstream 1271322 34114673 ~ 34114939 (+)

Expression


Co-expression Network