AMCG00013503 (ttc9b,LOC107096866,LOC103357803)


Basic Information

Item Value
gene id AMCG00013503
gene name ttc9b,LOC107096866,LOC103357803
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33080737 ~ 33083411 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013503
TGCCTGCTGCAGTCGGAATTGGTGAACTACGAGCGGGTGAAGGAATACTGTCTGAAGGTGCTGTGCAAACAAAAGGACAACTTCAAAGCCATGTACCGCGCCGGGATCGCCTTCTACCACCTGGGCGACTACGACAGCGCCCTTCGCTACCTGAAAGATGCCAGGAGCCGCGAACCATCAGACACCAACGTGCTACGGTACATTCAGCTGACAGAGATGAAGATGAGCAAAAGCAgccagagagagcgagagtgcAGCAAAGAAGCCATGGGCTAA

Function

symbol description
ttc9b Orthologous to human TTC9B (tetratricopeptide repeat domain 9B).

NR:

description
PREDICTED: tetratricopeptide repeat protein 9B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013503 True 276 mRNA 0.54 2 33080737 33083411

Neighbor

gene id symbol gene type direction distance location
AMCG00013505 NA coding upstream 19457 33056761 ~ 33061280 (+)
AMCG00013504 NA coding upstream 35383 33032612 ~ 33045354 (+)
AMCG00013501 NA coding upstream 58937 33015315 ~ 33021800 (+)
AMCG00013502 NA coding upstream 84653 32977931 ~ 32996084 (+)
AMCG00013499 NA coding upstream 116795 32951315 ~ 32963942 (+)
AMCG00013509 NA coding downstream 109224 33192635 ~ 33239625 (+)
AMCG00013510 NA coding downstream 189315 33272726 ~ 33284978 (+)
AMCG00013512 numbl,LOC106535595,LOC101072040,LOC106965209,LOC103154637 coding downstream 245900 33329311 ~ 33347695 (+)
AMCG00013514 NA coding downstream 368606 33452017 ~ 33464680 (+)
AMCG00013520 NA coding downstream 433744 33517155 ~ 33521234 (+)
G44790 NA non-coding upstream 242894 32837315 ~ 32837843 (+)
G44769 NA non-coding upstream 322357 32756738 ~ 32758380 (+)
G44747 NA non-coding upstream 425035 32655503 ~ 32655702 (+)
G44702 NA non-coding upstream 537061 32542635 ~ 32543676 (+)
G44620 NA non-coding upstream 794578 32286014 ~ 32286159 (+)
G44860 NA non-coding downstream 317 33083728 ~ 33088760 (+)
G44861 NA non-coding downstream 5405 33088816 ~ 33090427 (+)
G44865 NA non-coding downstream 10891 33094302 ~ 33095508 (+)
G44867 NA non-coding downstream 17063 33100474 ~ 33100687 (+)
G44868 map3k10,LOC107554498,LOC107560156 non-coding downstream 19228 33102639 ~ 33102873 (+)
AMCG00013478 NA other upstream 625051 32423276 ~ 32455686 (+)
AMCG00013477 ppp1r37 other upstream 680285 32393818 ~ 32400452 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other upstream 795786 32273268 ~ 32284951 (+)
AMCG00013468 NA other upstream 1168936 31901530 ~ 31911801 (+)
G44325 NA other upstream 2303568 30776851 ~ 30777169 (+)
G44870 NA other downstream 22881 33106292 ~ 33106595 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other downstream 293109 33376520 ~ 33412841 (+)
AMCG00013516 NA other downstream 358983 33442394 ~ 33449093 (+)
G45029 NA other downstream 612181 33695592 ~ 33699545 (+)
G45072 NA other downstream 1031262 34114673 ~ 34114939 (+)

Expression


Co-expression Network