AMCG00013512 (numbl,LOC106535595,LOC101072040,LOC106965209,LOC103154637)


Basic Information

Item Value
gene id AMCG00013512
gene name numbl,LOC106535595,LOC101072040,LOC106965209,LOC103154637
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33329311 ~ 33347695 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013512
ATGGCGTGCGCAGTCCTGATGGAAGCTGATGTCTACCACAGGGAAGAGAAACGGGCCTGTGACAGGGATCCCGAAATGAACAAGCTGCGACAAAGCCTGCGCAGAAAGAAGCCCTCCTATGTCCCCGAGGCCAGCCGACCACACCAGTGGCAGGCAGATGAGGAGGCCGTGCGCAAGGGCAAATGCAATTTCCCTGTGCGGtACTTGGGCCATGTGGAAGTGGACGAGTCCAGAGGCATGCATGTCTGTGAAGAGGCTGTGAAGAAACTCAAAGTTAGCGGGAAGAAGTCTGTTAAGGCGGTGCTGTGGGTGTCGGCAGACGGCCTGAGAGTGGTGGACGACAAAACCAAGGACCTGATCGTGGACCAAACCATCGAGAAGGTGTCCTTCTGCGCGCCCGACCGCAACTACGACAAGGCCTTCTCCTACATCTGCCGCGACGGCACCACCCGCCGCTGGATCTGCCACTGCTTCATGGCCCTCAAGGATTCGGGGGAGCGCCTGAGCCACGCGGTGGGCTGTGCGTTTGCCGCCTGCCTGGAGAGGAAGCAGCGGCGGGAGAAGGAGTGTGGGGTCACAGCCTCCTTTGACGCCAGCCGCACCTCCTTCGTGCGCGAGGGCTCCTTCAGGGTTACCTCCGCCAGCCAGCAGGCCGACCGCGAGGATGTCATGAAACAGCTGCAGGAGAAGAAGAAAGCAGAGACTCCCGTGGCCATCCCCGCCATTCCCCCTGGCGCCGCCTCCCCCCCTGAGGGCGCCGCCTCCCCTGTGGACAAGGCAGAGCCAGGGGGCCAGCATGCCATCCCCCGCCGCCATGCGCCCATCGAGCAGCTGGTGCGCCAGGGCTCCTTCCGGGGCTTCCCTGCCCTGAGCCAGAAGAACTCCCCCTTCAAGAGACAGCTGTCCCTGCGGCTCAACGACCTGCCCTCCACCCTGCAGCGCAAGACGGACTTCCAGGCCAAAAACCCTGTGCCCGAGATGGACACTTCGGCGATGCCCGGCGAGGCGGACAGCATCAACGCCCTATGCTGCCAGATCAACACCTCCTTTACCAAGCCCTCTGAGGACCCCTTTTCCACGGCCACCTCCAACGGCATCCCAGCCTCCATGGCACCCCCCACCCTGCCTCCCCCTCCTGCACCCCCACAAGGTACGACCACATGGGCACAGAGCGAGCCCCCCACCCagtctccaccccccttccaAGGCGGGCACAAGCGGACGCCCTCAGAGGCCGAGCGCTGGCTGGAGGAGGTGGCGAAGGCGGTCAaagcccagcagcagcagcaacaaccacagcagcagcaagcaCAGCTGCCCCAAGCCATGTCCGCTGTGCCCATGTCCCTGCCCTCGGCCATGCAGCCCTTCCCCATGGCCTTCGATGCCACCCCAGCACCAGTGGGCATGTATGCCCCCCCGCCCCTGCAGCCCGCCTTTGTGCCCATGCCGACCTACATGCCAGCCCTGGCCAACAGCATGACCTACCCCAATGCCAGCGTCCCTGTGGTGGGCATCACGCCCTCCCAGATGGTGGCCAATGTTTTCTGCACGGCGGCAGCCTCAGGGGCACCCACAGCCGGGGGGGTGGGCAAGATGGGAGGGCACAGCTTCACCACCCCCGGCTTCACGGTCGGCCCCTACCACAACCCCGCCGCCCTCAACGGCatgccccccatcccccccatgCCCGCACCTATGGCCACTGCCACACAGAATGGCACCACAAACGGGACGAGCACAGGCTGGCCCTTGGAGGCCCGGCAGCTGGCAGGCGCATCCGGGGACGCACAGGAGGCCGATCGTTTCGAGGCTCAGTGGGCAGCACTGGAGTCCAAAACCCAGCAGAAAGCAGCGAACCCCTTCTCTAACGACctgcagaaaacatttgagATCGAGCTTTAACTGAGCCCCAGGCCGGCTGTACGGACTGCGACACAGACACAGCGCAGACAAGACTGAACCACTCTGCTTTACGTTACGTTACATTTTTATTGGGAGTTTTTATTTCCGTTCATTGCttcctttctgtctgtcttcctgtctgtcttttttcattccttttttctttaatttttcttGGCTGAACCACTCCTCTCCCCCCCGCTCCCTACACTCCACTGTacgaacaaaacaaaccatccCTTCTCCCCCCTACCTACTCGAACCccaaaaacatgaagaaagacTAACTGATCCTTATGTCTTCTGGATACACTTCATCTCAGATTGTGGATGCCAGCGCTCTGACCTGTAACCTTAAACACTCCATTTTCATGTCTGTGACACcgtgaagacaaaacaaaacaactgagGTTAGCATTCTTCTTCTGCGACAAGAGGCCATATTTTGAATCCTAAAACATCCCGCCTAATGGCCACGGCCTGCTTCACAACAGGGTGATGATCTCAAGGCAAGAAGCATTAAAGCTGAAGCACAAGTTAAAAGAAAAGGCTGATCAAGGAATTAAGgggaacaaaatgtatttacaggAAGTGTGCTATTTAAAGGGGTAACAAAATAAGTCAATCTGCCATTTACTTCCCTTCCTTTCCCTAATTCacttcttgtttctttttgtaaaagaagggggggaaaaacaacatgCTTTTTCAACATGGCAAAACTGCCCAAGCCATGCCGGGGTTTGGGTGGGCAGTTGGCTCTACCCTGCAGCTGGTAATTATGGTCTGCCATTTCTATGCCCTCCAGTGTTGTGAAAAGAGGCCTGACAGCACATGCGTAGGAAAGCAcacgtgtgagtgtgtgttcagTTGTTCAGGTTCTCAAAGATCAAGGTGGATGTACTTCAACAAGTCAGATTGTATTTGCATCAAGATTTCAAGTGAAGCCTATTGCCGTTCATGTTCATCTTTTAGCCTTCCCCgtaatagaaaatattttgtagcaCCATGAAAATGATGTATGTGATGTGCTTTAATTTGCAATCGGCTGTTATCATCACTTGAAATCAGCAATTGTTTTCCCAAATCTACACTGGGATAAATCTTTTGATCTTCAACCTGACTGAATGCTGTACTTCTGAACTAATCTGGGGGAGCTGAAGGCCTGTGTTATCTCcttctaaaacacacacacacttcctagGCATGTGCTAGCCAAGACAATCCCCTCTCTTCATTGCAGTCCACAATGTTAGCAGTGGATCCTCACAGAGCCACATCATGATAGGCCCTAGGCCTGTCTAACCATCCCATGTAGGCTGTGGAAGTGTGTGCAGGtttgtcatgcttttttttttggtttgcttttccaAATTACCCTTAAACCAAGCTGTCAGGTGTCACATGCCGATCTGTCAGACTAGATTCAATAGTATGTGTGACGTGCTCCTAGCCTGTGCAGTCGACAAAGGGGGCTAGTTCACCAGCCATGTTATTTAGCGCTGGCCCTATTTTGGTAGTTTGTTGGTTTTGGTAAGGTGTCTAAGGCTAGTTCATACCAGTCCCTTTACCTTTCAGAGATGAATGGGAGGGGCTTGTGATGGATCTCGGTCTCTGTTGATGCTGGCGACCTTGATAGGGTCAGTGGTTGGGCACCAAAGTCAACTCCTATAAGTGGCATTCCTACGCCAAGCCTACACAATACAGATGGGTCAGTCTGCTCAAATTAAGGGAGGGAAAGAATTTGAGGTCACACAGAACAAGCaagcattttttgttgtttttaatggcagTGGTATTGCAGGTCAGCTTGGGTCAAAACCAATGCAGTTATCGCTCAAAACTATTTTTCAGTCAAACCCGATCAGACTTTGTATTGGATGACTGCGGGCTCAGGGCTCCTGGATATTAGGTTTATTGAGCCCTCTGTGACTGCTGAATcctgttgatgtatttatttattattagagAAGGAATTGACAGGGGAGGAGGCAGGCAGCAGGAGGAAAGTAGGGGGATGTGAGGTTGGGTTGGTTCCAGGCAGGTTGGAGTAGGTAGCAGGTGGCGGAAGTGCATGAGTGAGACGTTGGGAATATCTGATATATCTTGAGCTGCTCAGAGACTTAAGACAGACAGATCCATACAGTTTGCTctagctttgtttttcttttcgttGACCTATACAGCATACTATTCAGTGCACTTTTGGTTTGCagtcttgatttaaaaataaaaagattggaAACTGCAGCCAAGCCAAGACTCAAAAGTGAGGAAGTGTTTACCAATAGAGGAAGTTTTGCACTGACTGAAGGGAAGAACAGACCGAGGTAAGGTTTGAAGAGCAGAAGAGATGACGGGGGAGAGTTTAATAGTGATTGACACAGAGGGATCAAGCTAAAGGAGGCTCCCTCTAGTGTAACTCTTAGACAGGAGACTTCCTATTAGCCCAGCATCAGAGGCTATTAGATTTTGATGGAAATTAAGGGGTGGTCTGTATATCGGAGGAAGCTAGGGGCAGTGAGAAGAACAGTGTGGCAGGTGAGGGTGCAGGAAATGTAAAGGAAGTAGACAGATGGCATTGAATTACAGATTGGGTgcccaaaacaaaatgatattCTGTAATATTAGATGGAAACTGAGAATGATTAGCATTATCTTTATTACAACCCCCTGCGTGAGCACTACCATTGGTTGCCCATTCCCACGGACCCGTCTGTTTCTATGCCCATCGGTGACTGACCATGTGTTTCCTGACAGACTTTTTGCCTTTTTCTGCAGCATGTTAGTGTTTTGTGATGGGAGactaaccaaccaatcagatCCATTCAAATTGGAGACCATAAGTGGGTTTGCACCCAAAGATGACGGATGTGACACAGCTGGTGAACTGACTCAACAAACATCCTTGCCAACTCGTATAGCTGTTTAATAGTAGAGtggttgtttttataataatttattttgttttgtaattttatctttatttttattttgtttagtgaCAGATTTACATTACTCTGGTCCAGataattaaaagacaaacatcaAACCTGTTTCCTTCTCCTGTAAAGACATCAGGGATCAAGCCTGTTGACTCAGTGGGTCCTTTTCCTTTgagaaaccaaaagaaaaagatttttAGCTGGGAGTGACTGGCATTACTGAGGAGTGATGTTGCTTGAGCTTGACTATAGAAAGGCCTCAGATTCTATagtgtatgttttaaattggATGGAGGTGAAGGaagagttatttttattttgctttgaaatttTAGCAGTGTGTTAATATACAACCTAAGGAAGTATTTTGGCCAATTACGAGGCGTCGCTGTGTTTGAAACGTGAGGTACAGTACAACGCATGGTTAGGCCCATATACTACTGTATTGGGGGAGCTGTATGACTCCACTGCTTTGTGATGCCTAGTGGACACAGACAATGCagcttttcaattaaacaagGAGATTTCAAACCTCTGCAGAGTAAAGAAAGGTCCACAAAAATGGTCAAAGAATGAGTTAAATATGTGACGTGAtagaaaccaaaccaaatggGGAATAAAAATATCTGGTTAGTACAATAACTTGGCCTGTGAGTTGATACCAGGACTAGTCGAGGGTCACCCCACTCAGTGAGACTGAATTGCAGCCTAACTGGAGATTACTTTTTCGAGAATAAGTACAGGAAAAGGATGACTTTCCGCCAAGTCATcgaatttattttcttaaattgtaagagcataatgtgatttaaaacaagaaaaaaaaaatccatcataGCCAGTTCCGTTACACATAAATTCAAAACATGACAGGAATACCTTTTGTGTTTCTCGAGCTGCGGCCCAATGTTGCAGACCAGCCAGGATCCAAAAATGGTACTTCtggtttgttttcctccttgcgtGTTATCAGCACATGTTGGTCACCTT

Function

symbol description
numbl Acts upstream of or within determination of left/right symmetry; negative regulation of Notch signaling pathway; and primitive erythrocyte differentiation. Located in cytoplasm. Is expressed in immature eye; integument; musculature system; nervous system; and pleuroperitoneal region. Orthologous to human NUMBL (NUMB like endocytic adaptor protein).

NR:

description
PREDICTED: numb-like protein

GO:

id name namespace
GO:0045746 negative regulation of Notch signaling pathway biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K06057 NUMBL; numb

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013512 True 5840 mRNA 0.50 9 33329311 33347695

Neighbor

gene id symbol gene type direction distance location
AMCG00013510 NA coding upstream 44333 33272726 ~ 33284978 (+)
AMCG00013509 NA coding upstream 89686 33192635 ~ 33239625 (+)
AMCG00013503 ttc9b,LOC107096866,LOC103357803 coding upstream 245900 33080737 ~ 33083411 (+)
AMCG00013505 NA coding upstream 268031 33056761 ~ 33061280 (+)
AMCG00013504 NA coding upstream 283957 33032612 ~ 33045354 (+)
AMCG00013514 NA coding downstream 104322 33452017 ~ 33464680 (+)
AMCG00013520 NA coding downstream 169460 33517155 ~ 33521234 (+)
AMCG00013519 NA coding downstream 189524 33537219 ~ 33538322 (+)
AMCG00013523 degs2,LOC106603795,LOC105011018 coding downstream 234859 33582554 ~ 33585179 (+)
AMCG00013524 polr2i,rpb9,LOC102785323 coding downstream 244515 33592210 ~ 33595459 (+)
G44871 map3k10,LOC102787573 non-coding upstream 203862 33122020 ~ 33125449 (+)
G44869 NA non-coding upstream 225919 33103167 ~ 33103392 (+)
G44868 map3k10,LOC107554498,LOC107560156 non-coding upstream 226438 33102639 ~ 33102873 (+)
G44867 NA non-coding upstream 228624 33100474 ~ 33100687 (+)
G44865 NA non-coding upstream 233803 33094302 ~ 33095508 (+)
G44954 NA non-coding downstream 92140 33439835 ~ 33441164 (+)
G44983 NA non-coding downstream 185077 33532772 ~ 33533155 (+)
G45100 NA non-coding downstream 1585511 34933206 ~ 34933787 (+)
G45108 NA non-coding downstream 1703162 35050857 ~ 35057957 (+)
G45124 NA non-coding downstream 1772384 35120079 ~ 35120344 (+)
G44870 NA other upstream 222716 33106292 ~ 33106595 (+)
AMCG00013478 NA other upstream 873625 32423276 ~ 32455686 (+)
AMCG00013477 ppp1r37 other upstream 928859 32393818 ~ 32400452 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other upstream 1044360 32273268 ~ 32284951 (+)
AMCG00013468 NA other upstream 1417510 31901530 ~ 31911801 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other downstream 28825 33376520 ~ 33412841 (+)
AMCG00013516 NA other downstream 94699 33442394 ~ 33449093 (+)
G45029 NA other downstream 347897 33695592 ~ 33699545 (+)
G45072 NA other downstream 766978 34114673 ~ 34114939 (+)
G45174 NA other downstream 1987195 35334890 ~ 35338052 (+)

Expression


Co-expression Network