AMCG00013513 (LOC106580829,LOC106612625,LOC105026889)


Basic Information

Item Value
gene id AMCG00013513
gene name LOC106580829,LOC106612625,LOC105026889
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33354581 ~ 33366875 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013513
GCACGACATACAGTgcgtttgttttctttctttcccttctctttCTGCTGCGGAGGGTTGTGGGAAATAAGCATGTAAACTGGAGtcccttgttgttgttgttgttgttgttgtcgtccaACACGACGTCCACGTCCGAAGCCGGCCAAGTCGGGATCCAGTAACAATGGTGTGAATCGAAAGCCATGTCAGACCTTTTGGTGAAACAAATGGACGAGAGGACGCTCTGTCATCCGAAAAAGGGAGACCAGTGCTCGGACAGCGCCAGGAGTTTCCTCTTGGTGGACGAGCACGAAAATGTACAGGTCCACGATGAGGCGGAGTTCCTGGAGAAGCTGTGCTGCCAGGCAGTTCAGAGCGTCAAGGTGGTGTCCATCTTTGGCAACACGGGCGATGGCAAGTCCCACACCCTGAACCATGTGCTCTTCCGTGGCGAGGAGGTTTTCTCCACCTCGCCCCTGCAGGACTCCTGCACGGTCGGTGTGTGGGCCGCCTTCGACCACGACTTGGGCCTGGTGGCGCTGGACACCGAGGGGCTGCTGGGCGCCGCCGCCAACCAGAACCAGAGGATGCGGCTGCTGCTGAAGGTGCTGGCCGTGTCGGACGTGGTTGTGTACCGCACGCGGGCTGAGCGGCTGCACAACGACATGTTCCAGTTCCTGGGCAGCGCCTCCGGGGCCTACCTGCGCCACTTCACCCCCGAGCTGCGGGCACTGTCCAGCCGCTGCGGCCTGGAGGTGCCCCTTTCCAGCCTGGGCCCTGGTGTCATCGTCTTCCAGGAAACCTCACGCACCAAGCTGCTGGGCTGTGAGAGCTCTGTCCCTGGCCAGGCTGACACCTTGCTGCAGAAGAGGTTCCATGACCTGGGGCTGACCACAGAAGCCTTCAGTTCAGTCCAGTATGTGGGTACCCAGACCATCAGCCCACCTACCGACTACTCCGGCCTGCTGGACGCCATCAAGCAGCAAGTGAAGAACACAGCCACCCGCTCCCCCCGCCACCCCTCCATCGTCTATAGCGCCCTGCAGGCACTGAGCGAGAGGTTCTGCGGAGAGATCTCGGACGAGAAGATCAGCCTGTACTCCTTCTTCCCAGATGAGTACTTCACCTGCTCCTCGGTCTGCCTCAGCTGCAATGTGCGCTGTAAGAACGGTATGAACCACCTCAAGGACAATGTCCCCCACATGGCAGATGGGCTGTGCCACTACACCCACCAGTACAACAACAAGGTCCTCATCTGTAAGAGATGCTACgagggaggcagagaggtgATCGTCATCCCCAAGACTTCAGCCTCCTCGGACAACCCCTGGATAGGCCTGGCAAAGTACGCTTGGTCGGGGTACGTGCTGGAGTGCGCCAGCTGTGGGATCATCTACCGCAGCCGGCAGTACTGGATGGGAAACCAGGACCCGGAGAGCAGTGTGGTGCGCCCCGAGGTCAAGCACGTTTGGCCAGGGACAGAGGCGTTCCTGACAGATCACCAGAATGCGGCCCAGCGCGTCCTGGATGGGGTTAACTTCGTCATCCAGTCCGTGTCGGAGTACAGCACTGGCCCCACCAAGGCCGTCACTGCCTGGCTCACTGACCAAGTGGCGCCGCCCTACTGGAGGCCCAACGCAGAGATCACCGAGTGTCATGGCTGCAGGAAGGCCTTTGAGGAGGTGGAGAGGAAGCACCACTGCCGCTCCTGTGGGGAGGGCTTCTGCCAGGCCTGCTCCACACACCGCATGCCTGTTCCCGAGAGAGGCTGGGGCAGCGCGCCTGTCCGAGTCTGCGACGCCTGCCACCGCCAAGGGGGTAACTCCACATCTGGCCAAGTCGCCCAGGTGGAGCCGCGGGGGCTGATGGCTCGGAGGGTGACGGAGGTGGCCCAGAGCACGCTGGATTTAGTTACTACAGCTGTGGACTATCCACTTGGTTTTGTGAAAGATGTTGCCAGGCCTGAGTACTGGGTTCCTGACCATGAGATCGTGCAGTGCCACCAGTGCAGCAAGACCTTCACGCCCAGCATGTCCAAGCACCACTGCCGGGCATGTGGACAGGGAGTGTGCAGCTCCTGCTCTGCCCACAGCCGCCCGGTGCCCTCCCGTGGCTGGGACCACCCCGTCAGGGTCTGCCAGGCCTGTGCCAGAAAGAAAGGCAACCTCTAGACTCAAGGGAAAGGGAAATGTGCAGCAATAGGAATTACTGGTGACTCCCTGACATGTATATTTCTTCTCCTCTCTAGACTGTGCTACCCTTACCCTGTGTATGTTCTACTTTGTGATCTATATCAGGTAACCCACCCACGATAGTACTGGACTTCCCTGCCAGtttcagctgttttgttttaagcacCAAATTCACAGTGTCTGGCCTGTGCGGCTAAGCACTACAGTGGATCGCTTGCAAGTCATCAGACTCTGGAGATCAGGGTACAGTATTGCCTTGCAGATACCCTGGAAGCCTCAGGCTGCGATAGGATAGCTCGCTCTAGCCCTAGCTTGTGCAGTTGTCTTCTGCTGATTGTTGCTTCGGAGTCCCCAGCAgtgtctgctgtgctgtgctggaaAGTTAGCCTTTAGGCCCGAACCTCAGGACATGGGACTTCGCCTAATGAGTGAGCCAACTCCCAGCACCACAGCCTCAAGCTCCACAGCTGGGAATCAGCCCTTTTCCAGCATCCAAAAGAACACCTGCTTCCAGGCTTGGGGTGCAGACAGGGTGCAGCATGGATTATCCTGCTTGTCTCACATGGGCATAACAGACATCCTACCCTAAAGGGCAGTGGTGCAGAGTCCTGGTATTAGAGGACAACAGTGTCTCCAGTGTCATGCCATGTGTTACTGGGTTAATTGGGCCAATTTAGTAGCTCTGTGTCGTTAAGGTGAAGGTGGGGCCTGTTTAAAGAGACCCATTCAACCTTCTGGGTCACGACACTCCAGGAACAGTGTTGTGCGCCCCTGCTGCCTAATCCTCCGATTCCTGTCTAATCCCCAGCCTACAGAAACAACCCGGCAGCCTCCGAGCTGCGTTGCCAGGATACAGACGGGGCACTGTGTGAAGAGCATTGCAGTCTGGACTGTAAACCAGCAGCCTCTGCTAATGACAGGATTTAAACTAGCTGTCAGTGCCCACTGAactccccccgcccccaccacTAAAACGCCAGTTTCTGCAGAAGCGCCAGCCTGGAATACAGTGGTGTCATCTGTCCAGTAAGGAAAATAACTTAACTAAAACAGCCCAACACATTACCGATCCATGCGGGCCAAGCTTTAAGTTCATTGACCCACACTGACAGGCCAGACTGAAATACAGTGCATTATCCATGACACCACTGCTATGGTCGCTAACTGCAGGGAGAGGCAGGGGCACAAACTGAATCTGGGGTAATGTGCTTGGCTACATATTTCACATCCCCAATAAAAAGGAGTAGACTGTCATAACATGAGATTTTACAGTTGCACACTGGGTGGCTGTAACAGCAGTGTGGTTGTTGTCTGTGTAGTTTCAGGGTTTAGGGTCCCTTCTGCCACACCAGTGCCTTTCTCTGTCAGAGTCTGTGCCCGTACTGGGCTCTGAGAGGGAGGATTCCACCACCCTGGGGTGCAGTAAACATGTGGTAGATACAGCATGagtaaaagcacacaaaaaaaaacatatgcaatgcaaaacaacattaatagCTGCTATTATGCATTACCTACGCAGATAAATCccctttgtgttttaaaatccaGATTCACAAGAAGATCATGctgaacatatattttaaatacggGTAATACCGAGCACTACAATAATTAGTTCAgttctgattaatttaaattatgaggGCAAATCTGTAATCTAGAAGAGCTTTTCACTTTCTGTACAATATGACAAAAGGGGAAATTATTCCAAACCAGGCCCAACACATTCAGCACAGGTGGCTTTGGCTTAGCAAATGAGGTGCCAGCTATGAAAACACTATAACCAAACTGAGTACAGGATCACAGAAACTGAAGAATgggcagattttatttttgtttggatgCTGATGAAGGTGGCTGGAGTTCTGTTCTGAATGGGAAGCTGCATGAAAACCTGGCCTGTTGGTATTTGGCAGTtgtttttgtatcatttcagAGACATAAGTCTATCCAGCAGTGTGATTTTCCAGAAAGGAGACCTGATGGGGAGATTTAGAAGAGACAACCTCTGCTGAGATAATCCTCATGTGGGGGTGACCAAAAAAAGCTTTTGGGATTATATAGCCAGCATTTTGCTATACCATTGCCCTACTTGTGTAACCTCTTTTAAATTCTGTATGATTATGTTTTTGATCATTCTGACTTACTATGTTGACTAGGTGAGACAAAGGGAAGATCAAACcctctggagagagagaggagttgtGACAGTGGGTTATTTAAGGGTTACACAGAACGGTGCAACACTAATTTGCTTCCCTAGCAGCCCTCGTTTCAAGAAATAGCCTAACAAGACAATCGCTCACTTTTACTGAAAGTTACGTATTAACAGGAAAATGCACGTGGTATACACCACTCCATCAGTGCCCCTTGGAGATGGGGCAATACATCTCCTCAGCAATGTATTTTAACTCACAGTAGTCATCTAGGCTGCTGGACATTCCAGTACTGAATACCTTTTATTTGGGCTCTAACTATCGTTTATGCATAATTGTTTACTTACAAGCAGTACAGGGGATAAGCCCTAGGTATATCGatattaatttgtgtgtaatttgtgaGTAATTATACAATTGGAGCTGAATGAATAGGCAtttttgatgcattttcagtgctCTTGATTATAACTGGACTATGGATAATAGTTTTCAGCAATGGGATGTTTATGATAATTGCCTTCTTTATTGTTCTACTTAATGTAAAAGCACTGTTTAAAGTATAGAAATTCTGGCATTagacaatcttttttttttttaaggagttGTTCTGAAGAATAAAACACTTCTAAACCCC

Function

NR:

description
PREDICTED: zinc finger FYVE domain-containing protein 1-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013513 True 4970 mRNA 0.51 11 33354581 33366875

Neighbor

gene id symbol gene type direction distance location
AMCG00013511 NA coding downstream 90705 33246164 ~ 33263876 (-)
AMCG00013506 NA coding downstream 211193 33130054 ~ 33143388 (-)
AMCG00013508 map3k10,LOC102787573,LOC107756783 coding downstream 231710 33121972 ~ 33122871 (-)
AMCG00013507 NA coding downstream 246085 33096639 ~ 33108496 (-)
AMCG00013496 NA coding downstream 517983 32833847 ~ 32836598 (-)
AMCG00013517 NA coding upstream 62230 33429105 ~ 33440936 (-)
AMCG00013527 NA coding upstream 190156 33557031 ~ 33576604 (-)
AMCG00013528 LOC107709035 coding upstream 229455 33596330 ~ 33609620 (-)
AMCG00013534 lrfn1,LOC106613031 coding upstream 1165555 34532430 ~ 34544065 (-)
AMCG00013535 NA coding upstream 1177202 34544077 ~ 34648703 (-)
G44936 NA non-coding downstream 6061 33343009 ~ 33348520 (-)
G44872 NA non-coding downstream 259163 33094397 ~ 33095418 (-)
G44864 NA non-coding downstream 264134 33088902 ~ 33090447 (-)
G44862 NA non-coding downstream 297718 33056653 ~ 33056863 (-)
G44848 NA non-coding downstream 323326 33028267 ~ 33031255 (-)
G44940 NA non-coding upstream 48658 33415533 ~ 33416219 (-)
G44941 NA non-coding upstream 49421 33416296 ~ 33422111 (-)
G44995 NA non-coding upstream 221715 33588590 ~ 33590089 (-)
G45007 NA non-coding upstream 248533 33615408 ~ 33615642 (-)
G45010 NA non-coding upstream 254577 33621452 ~ 33621738 (-)
AMCG00013488 NA other downstream 726677 32622153 ~ 32627904 (-)
G44719 NA other downstream 786629 32565760 ~ 32567952 (-)
AMCG00013425 NA other downstream 2611938 30730287 ~ 30742643 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other downstream 2868250 30483305 ~ 30486331 (-)
AMCG00013412 NA other downstream 2872255 30468630 ~ 30482326 (-)
AMCG00013518 NA other upstream 101974 33468849 ~ 33501747 (-)
G45037 NA other upstream 311349 33678224 ~ 33678907 (-)
AMCG00013531 NA other upstream 325969 33692844 ~ 33699712 (-)
AMCG00013578 NA other upstream 3512318 36879193 ~ 36885493 (-)
G45468 NA other upstream 3592302 36959177 ~ 36959914 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008369 si:ch211-11n16.2 coding NC_007126.7 CM002899.2 14378829 ~ 14420564 (+)