AMCG00013516


Basic Information

Item Value
gene id AMCG00013516
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33442394 ~ 33449093 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013516
tgtgatAGCGCTGCAGTGGGCTCAGCTCATATTCAGTACACTCTGGGAGGGCAGTCCTTCACGAAAGAAGTGAGCTTCAGTCTCAAGCCTCAGAAGGACTCTGGGCTGGCTCTGCATAGACTCCACGCTCGCGCTGTGATTCGCTCCATGGAGAAGCAGCATGACTACTGGAGTGACTATTTCAGAGATCAAAGGAAGGTGCAGGAGCTGGTGGGGCTGAGCTTTGACTCTGGAGTGGCCTGTGTGATCACTGACTACATCACCGTCCAACGAGACACCAAGAAACCCGTGGAAGGGTTGTCACCCATCAAAACTTTTCAGTCCTATGCCCGCTGGACATGTGAAGGAGTCGCGTGTTCTTTTGAAGAGAAGGTGGAAGACTGGCTGCCAGATGAAGAGAGCGCCCTGCTGAAGCTCGTCACTCTTCAGAAGGCCGATGGCTCCTGGGCCGTGGACAGCGCGCTGGTCTCTGTGTTGGGGAAAACTGACGAGGAAGTGAACGGAGGGATGCCTGAAAAGACACAGAGCCAGGCAGCCTGGGCCACGGTGCTGGTTCTGCTGTGGCTGCACACATTCCAGCTGGATTCCAGAGATGAGTGGGAGCTGATGGCCGCCAAAGCAGCGTCCTGGATCAGAGCACGGCCAGGTAAAGGGAGGCGGGATGCCTGCTGGGAAAATTCCCCGCTGGGTCACAGGGTAGCTAGGGTAGCAGTCTTGAATGCTCACTGGCTGTGTGCGCCGAGGAACTACAGAGTGAAAATAAGggctCAGCATGACACAGTATTTGGAGGCTGGGAACTCTCTGCTGGGCTGCCAGGTGAAGCCACAGACACTGGGACTGTGAGGCAGAAGTGA
>TU56031
CCTGCTGTACGCCCAGCTCAGAGGCCAGtgtgatAGCGCTGCAGTGGGCTCAGCTCATATTCAGTACACTCTGGGAGGGCAGTCCTTCACGAAAGAAGTGAGCTTCAGTCTCAAGCCTCAGAAGGACTCTGGGCTGGCTCTGCATAGACTCCACGCTCGCGCTGTGATTCGCTCCATGGAGAAGCAGCATGACTACTGGAGTGACTATTTCAGAGATCAAAGGAAGGTGCAGGAGCTGGTGGGGCTGAGCTTTGACTCTGGAGTGGCCTGTGTGATCACTGACTACATCACCGTCCAACGAGACACCAAGAAACCCGTGGAAGGGTTGTCACCCATCAAAACTTTTCAGTCCTATGCCCGCTGGACATGTGAAGGAGTCGCGTGTTCTTTTGAAGAGAAGGTGGAAGACTGGCTGCCAGATGAAGCTGCCCGGGCGGAAGAGAGCTCCCTGCTGAAGCTCGTCACTCTTCAGAAGGCCGATGGCTCCTGGACCGTGGACGNNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013516 True 855 mRNA 0.56 7 33442794 33449093
TU56031 False 503 TUCP 0.55 6 33442394 33446921

Neighbor

gene id symbol gene type direction distance location
AMCG00013512 numbl,LOC106535595,LOC101072040,LOC106965209,LOC103154637 coding upstream 94699 33329311 ~ 33347695 (+)
AMCG00013510 NA coding upstream 157416 33272726 ~ 33284978 (+)
AMCG00013509 NA coding upstream 202769 33192635 ~ 33239625 (+)
AMCG00013503 ttc9b,LOC107096866,LOC103357803 coding upstream 358983 33080737 ~ 33083411 (+)
AMCG00013505 NA coding upstream 381114 33056761 ~ 33061280 (+)
AMCG00013514 NA coding downstream 2924 33452017 ~ 33464680 (+)
AMCG00013520 NA coding downstream 68062 33517155 ~ 33521234 (+)
AMCG00013519 NA coding downstream 88126 33537219 ~ 33538322 (+)
AMCG00013523 degs2,LOC106603795,LOC105011018 coding downstream 133461 33582554 ~ 33585179 (+)
AMCG00013524 polr2i,rpb9,LOC102785323 coding downstream 143117 33592210 ~ 33595459 (+)
G44954 NA non-coding upstream 1230 33439835 ~ 33441164 (+)
G44871 map3k10,LOC102787573 non-coding upstream 316945 33122020 ~ 33125449 (+)
G44869 NA non-coding upstream 339002 33103167 ~ 33103392 (+)
G44868 map3k10,LOC107554498,LOC107560156 non-coding upstream 339521 33102639 ~ 33102873 (+)
G44867 NA non-coding upstream 341707 33100474 ~ 33100687 (+)
G44983 NA non-coding downstream 83679 33532772 ~ 33533155 (+)
G45100 NA non-coding downstream 1484113 34933206 ~ 34933787 (+)
G45108 NA non-coding downstream 1601764 35050857 ~ 35057957 (+)
G45124 NA non-coding downstream 1670986 35120079 ~ 35120344 (+)
G45129 LOC105030512,LOC106584099,LOC106569888,LOC106613431,LOC106573797,LOC106609167 non-coding downstream 1692329 35141422 ~ 35142529 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other upstream 29553 33376520 ~ 33412841 (+)
G44870 NA other upstream 335799 33106292 ~ 33106595 (+)
AMCG00013478 NA other upstream 986708 32423276 ~ 32455686 (+)
AMCG00013477 ppp1r37 other upstream 1041942 32393818 ~ 32400452 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other upstream 1157443 32273268 ~ 32284951 (+)
G45029 NA other downstream 246499 33695592 ~ 33699545 (+)
G45072 NA other downstream 665580 34114673 ~ 34114939 (+)
G45174 NA other downstream 1885797 35334890 ~ 35338052 (+)
G45209 LOC107575789 other downstream 2206209 35655302 ~ 35659833 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other downstream 2611662 36060755 ~ 36085843 (+)

Expression


Co-expression Network