AMCG00013518


Basic Information

Item Value
gene id AMCG00013518
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33468849 ~ 33501747 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013518
ATGTCCGGGGGCTCCAGACCCAGGGAGGGGCCGCTGCAGGTGCCTGGCCCAGTAGGGCTGCAGACGCTCCTGGATCTGCTGGTGGGGGTGTATGAGGAATTTCGGGTGTCCCCCCTGTCAAGAGAGAAGTACGTCGTGGGTTTCCTGCAATGGGATTGTCTCAGTCAACAATGTTCACAGAGTGTTTATTCTTCTCGTCCAATCACAGCCGAGCCCCTGGTCAGCCAGGTGAAGAGTACCCGCCTCCAAAGAGATGACTTTGAGATCCTCAAGGTGATTGGTCGAGGCACCTTCAGTGAGGTGGCTGTGGCGCGGATGAGGAGGACGCAGCAGGTGTATGCCATGAAGATCATGAACAAATGGGACATGCTGAAGAGGGGAGAGACGGCCTGCTAccaggaggagagggaggtaCTGGTGAGGGGAGACCGGCGCTGGATCACAGAGCTCCACTTTGCCTTCCAGGATGACAACAACCTGTACCTGGTGATGGATTACTACGTGGGGGGTGACCTGCTGACCCTGCTCAGTAAGTTTGGAGACAGGATCCCAGAGGAGATGGCCCAGTTCTACCTGGCGGAGATGGTGATGGCAATAGACTCAGTGCACAGGCTGGGCTATGTGCACAGGGACATCAAGCCCGACAACATCCTGCTGAACGCTCAGGGTCACGTGCGGCTGGGGGATTTCGGCTCCTGTCTGAGAGTGCAGGAGGATGGCCTGATCCACTCCTCGCTGGCGGTGGGCACTCCCGACTACCTGTCCCCGGAGATCCTGCTGGCGGTGGAGGACAGCGCAAGGGGGTACGGCCCCGAGTGTGACTGGTGGTCCCTGGGCATCTGCGCCTTTGAGATGTTTTACGGAACGACGCCCTTCTACGCCGACTCCATTAGCGAGACGTATGCCAAAATCATACACTTTCAGGACTTCAGGGGGCACCCGTTCTTCGCAGGCATCGACTGGCACAACCTGCACCACTGCCAACCGCCCTTCCAGCCCGAGGTGTCCAACGCCACTGACACCTCCAACTTTGACGTGGTGGACGACTGCCTGAGCGATGTgGAGACCCTGTGTGAGGTGCTGGAGAGTGCACCAGTGGGAGTTCACCTAGCCTTTGTGGGCTACTCCTACACAGCCACCAAAGAAACTGGTGCTAAGGACCGGAGTCAGGACATCATGATGGAGATAGACCGGCAGCAGCTGACTGAGGAGGAGAGCCTGCTGTTCCAGGAGAGGCTGGATCAGGTGTGGCTGAGGGAAGGGCTGCCCCCTGAGCTCCCCCTAGTACTGGAGCAGGGAACCACAGAGCCCCATGACGAGACCAACCAGAGTTCAAGTCAGAATGAAGAGCTGCAAAGGAGGGTGTGGTCTCCTGCTTGCTCCAATCACACAGCCAGCTACTCTAACCagcttctctcttcctccaATCACAGAGCTGAGAATCTGCCAGTCGTGCCTCACTTTGCCTGCCTGGTACCCGGATCTCATGGGGGATAGCTCAACGGCACCCTCTGCCTGCCAGTACCCTCTGGTCATTTCTCTGCATCGCCACCTACTGCTGTTTCACAGGgtgCACCGGCCACAGGTGAGGATGGAGAACTACCTGCTGGTGTGTGCATCTGGGAGGGAGCTCCTGGCGTGGTCTCGTCACTGCAGCACGGAGGTGTCTTGACGGGGGCCACAGAGCCACCCCTCCCCGGCCCCTCTCCTGGTCTGGAGGATCAGCCGCTAACAACCTCATGAGAGGTGTCGAATCCATTCCACGAGAAGCCACTGGGACCCTGAGATACTAAAAATCAACCAGGGGTGGGCACTGGACTGCAGTGGAGCCCAGGTCAGGAGGGCAGCATGGTGGAGGGAggaaaagggggagggggggcagccATCTTCCATAGCATCCCAGGGCAGCCAAACTGCAACCAACATCGGCTGACCCCCAGCTGGCAAACTATCAGCCTCTCTTTATACTTGATAggcacaaaaaaactaaaattaaaatcacaaaattcAAAAGCACCTAGTTCTTCTAGGGGTGATTCATAAGCCAGCTGTATTAAGCATTCACACCTCAAGGGCTGTGGGTAACAGATCACAGGTCACACGGACCACGTCCCTCTGGCTTTTACTGTTAAGCCGCCCATAAAACTGGttgctgtgtctctgtctttgaGTGGATCAGTAATTTGGATTACGGCTCTCTTTTACCTCTCCTTAGTGGCTTTTAAGACAACTGGGTaaagtgggggtggggggagactCAATTTGTTCACACAGAACACATGGTAAAGCAGAGTATGTCAGCAGAAAGCATGACTCATCAACTGTCAGTCCAGGGTTATATCGTACCCACTTGTTCACAACAACTGCTCTGGTTGGCTGGGAGAGAGGGGGCCCTAGGGAGCAGAGCTGATGGAGGCTCTCTCTATTAAAGTGACAAAGATGCCAGAGAAGGCGAAAAAAGGGAGGGAAAAAGCTCCAGGTATcagccaaaacaaataaaaattaaaataaaataaatataaattacgCACACAGGTAACGGGTTAAAGCAGAGTATAGTAGCTGCTATGGTGGAGTTAAAGTAGAGAAATTAAATGATCCTCTATTCAGTACAAAGGTAGGGTGGAAAAGATCCATGGGGGTTCACAAGGAGTATGGGAGTGAAAGTCAGATATCATGGCTCTCTGtaacaggcaggcaggcaggtagGCAAAACCAAGTAAAGTCAGAGACAGACCAGCAGAGATAGAACCAAGTTAGACCAGAGTGGCTGGGGTTGGTTGGGTTTGTGCTCCCTCCTCCAGGGATCGTATAGCTCCACAACAGCCCCTGCTTATGATGCGCTATATCAGAATCACTGGGTGAACGAGGAGAGGATCTGGGCTTGGCAGGGAAGGCCCCATCTGCCTCGTGTCCTTCACGCAGAACTGGAGTAAAGGCCGAGATTAGCGTTAACACGTGCTAAATGGATTAAACTTCATTTATTCAATTCTACTGCAGCAGGAATCAATGAACACTCATGAAAAGAAAGAGCAAAAAGTTGGGATGTTTCCAAAAGGGGTGTCCACTGGGGAGAGTGGTCATGAACTTCAGTGCACCGTGGTAGCTGTTCTCACTTTCACAAGGTTCCCCCACACCTACCCCATAATGATGGTCTTTGCACTACATCAGTGGCCGCCTGAGGTGTATGTTACTGTACTGACTGTATTCTCTTAGACAAGCCTTTGTATATGCATTGATACATTGCTGAGCTTACCACTCATGGAGTCTGTTGTCAGATCAATAGCCCCCCGGCCTAGAGTGCCAAGGACGGAGAGAGAAGTGCACTACCTTGTGAAATATGAATACCCCAGTCAATAAGGGCCTCAGTGCAGCCTTGAATGTTACAGTGTTAAAAAGCTGGAGTCTGTATAATAGTCCACTGTGTTTTAATGCACATCTTCATTTGTTTGATCTGTGTGATGCTTGGTGGTCGTTTTTGGTTTGGATGTACGAACTCCAtcccccaccaaaaaaacaaacaaacaaaaaaaataacctgGTTTCAAATGGAGGAGTTAGGAAAGTAAAcagtcaaatttaaaataactgtggTATGAAACCCAGATTACAAGGGCTGGGCATATTAACCTGATATATGAATACTGGGGATACAGAGATTTCTTTGCCAgggctaaaaaataaaaaatatgcacCAACATGTTTACTGTAAGAGTGCTGCAGGAAAGGGGGGTTTATTCTTCCCTACGTGTTGCTATATCTCTGTAAGTAGCACGCCCAGTGTCTGTCTTGGCCTGTTACAGATCCCCACAAATTGACATACAATCTGTACAAGACTAAGCTGGCAGGCCCATGCATGGTGAGCACAGCCAGTGTGTGAATGAAAACTGTGCAATATTCAAGATAGGAATGCATGACAGACACAATTTTACAGTTATCtaataataaaagttaatatattgtgaattttagttgtttttttagggATATTTTATAAGAGAAAGCCATATGTATGTTGATTACTGCTCa
>TU56054
AGCTACTCTAACCagcttctctcttcctccaATCACAGAGCTGAGAATCTGCCAGTCGTGCCTCACTTTGCCTGCCTGGTACCCGGATCTCATGGGGGATAGCTCAACGGCACCCTCTGCCTGCCAGTACCCTCTGGTCATTTCTCTGCATCGCCACCTACTGCTGTTTCACAGGgtgCACCGGCCACAGGTGAGGATGGAGAACTACCTGCTGGTGTGTGCATCTGGGAGGGAGCTCCTGGCGTGGTCTCGTCACTGCAGCACGGAGGTGTCTTGACGGGGGCCACAGAGCCACCCCTCCCCGGCCCCTCTCCTGGTCTGGAGGATCAGCCGCTAACAACCTCATGAGAGGTGTCGAATCCATTCCACGAGAAGCCACTGGGACCCTGAGATACTAAAAATCAACCAGGGGTGGGCACTGGACTGCAGTGGAGCCCAGGTCAGGAGGGCAGCATGGTGGAGGGAggaaaagggggagggggggcagccATCTTCCATAGCATCCCAGGGCAGCCAAACTGCAACCAACATCGGCTGACCCCCAGCTGGCAAACTATCAGCCTCTCTTTATACTTGATAggcacaaaaaaactaaaattaaaatcacaaaattcAAAAGCACCTAGTTCTTCTAGGGGTGATTCATAAGCCAGCTGTATTAAGCATTCACACCTCAAGGGCTGTGGGTAACAGATCACAGGTCACACGGACCACGTCCCTCTGGCTTTTACTGTTAAGCCGCCCATAAAACTGGttgctgtgtctctgtctttgaGTGGATCAGTAATTTGGATTACGGCTCTCTTTTACCTCTCCTTAGTGGCTTTTAAGACAACTGGGTaaagtgggggtggggggagactCAATTTGTTCACACAGAACACATGGTAAAGCAGAGTATGTCAGCAGAAAGCATGACTCATCAACTGTCAGTCCAGGGTTATATCGTACCCACTTGTTCACAACAACTGCTCTGGTTGGCTGGGAGAGAGGGGGCCCTAGGGAGCAGAGCTGATGGAGGCTCTCTCTATTAAAGTGACAAAGATGCCAGAGAAGGCGAAAAAAGGGAGGGAAAAAGCTCCAGGTATcagccaaaacaaataaaaattaaaataaaataaatataaattacgCACACAGGTAACGGGTTAAAGCAGAGTATAGTAGCTGCTATGGTGGAGTTAAAGTAGAGAAATTAAATGATCCTCTATTCAGTACAAAGGTAGGGTGGAAAAGATCCATGGGGGTTCACAAGGAGTATGGGAGTGAAAGTCAGATATCATGGCTCTCTGtaacaggcaggcaggcaggtagGCAAAACCAAGTAAAGTCAGAGACAGACCAGCAGAGATAGAACCAAGTTAGACCAGAGTGGCTGGGGTTGGTTGGGTTTGTGCTCCCTCCTCCAGGGATCGTATAGCTCCACAACAGCCCCTGCTTATGATGCGCTATATCAGAATCACTGGGTGAACGAGGAGAGGATCTGGGCTTGGCAGGGAAGGCCCCATCTGCCTCGTGTCCTTCACGCAGAACTGGAGTAAAGGCCGAGATTAGCGTTAACACGTGCTAAATGGATTAAACTTCATTTATTCAATTCTACTGCAGCAGGAATCAATGAACACTCATGAAAAGAAAGAGCAAAAAGTTGGGATGTTTCCAAAAGGGGTGTCCACTGGGGAGAGTGGTCATGAACTTCAGTGCACCGTGGTAGCTGTTCTCACTTTCACAAGGTTCCCCCACACCTACCCCATAATGATGGTCTTTGCACTACATCAGTGGCCGCCTGAGGTGTATGTTACTGTACTGACTGTATTCTCTTAGACAAGCCTTTGTATATGCATTGATACATTGCTGAGCTTACCACTCATGGAGTCTGTTGTCAGATCAATAGCCCCCCGGCCTAGAGTGCCAAGGACGGAGAGAGAAGTGCACTACCTTGTGAAATATGAATACCCCAGTCAATAAGGGCCTCAGTGCAGCCTTGAATGTTACAGTGTTAAAAAGCTGGAGTCTGTATAATAGTCCACTGTGTTTTAATGCACATCTTCATTTGTTTGATCTGTGTGATGCTTGGTGGTCGTTTTTGGTTTGGATGTACGAACTCCAtcccccaccaaaaaaacaaacaaacaaaaaaaataacctgGTTTCAAATGGAGGAGTTAGGAAAGTAAAcagtcaaatttaaaataactgtggTATGAAACCCAGATTACAAGGGCTGGGCATATTAACCTGATATATGAATACTGGGGATACAGAGATTTCTTTGCCAgggctaaaaaataaaaaatatgcacCAACATGTTTACTGTAAGAGTGCTGCAGGAAAGGGGGGTTTATTCTTCCCTACGTGTTGCTATATCTCTGTAAGTAGCACGCCCAGTGTCTGTCTTGGCCTGTTACAGATCCCCACAAATTGACATACAATCTGTACAAGACTAAGCTGGCAGGCCCATGCATGGTGAGCACAGCCAGTGTGTGAATGAAAACTGTGCAATATTCAAGATAGGAATGCATGACAGACACAATTTTACAGTTATCtaataataaaagttaatatattgtgaattttagttgtttttttagggATATTTTATAAGAGAAAGCCATATGTATGTTGATTACTGCTCacttatgatgat

Function

GO: NA

KEGG:

id description
K08788 DMPK; dystrophia myotonica-protein kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013518 True 4029 mRNA 0.51 14 33468860 33501747
TU56054 False 2645 lncRNA 0.47 3 33468849 33472231

Neighbor

gene id symbol gene type direction distance location
AMCG00013517 NA coding downstream 27913 33429105 ~ 33440936 (-)
AMCG00013513 LOC106580829,LOC106612625,LOC105026889 coding downstream 101974 33354581 ~ 33366875 (-)
AMCG00013511 NA coding downstream 204973 33246164 ~ 33263876 (-)
AMCG00013506 NA coding downstream 325461 33130054 ~ 33143388 (-)
AMCG00013508 map3k10,LOC102787573,LOC107756783 coding downstream 345978 33121972 ~ 33122871 (-)
AMCG00013527 NA coding upstream 55284 33557031 ~ 33576604 (-)
AMCG00013528 LOC107709035 coding upstream 94583 33596330 ~ 33609620 (-)
AMCG00013534 lrfn1,LOC106613031 coding upstream 1030683 34532430 ~ 34544065 (-)
AMCG00013535 NA coding upstream 1042330 34544077 ~ 34648703 (-)
AMCG00013538 NA coding upstream 1490135 34991882 ~ 34992115 (-)
G44941 NA non-coding downstream 46738 33416296 ~ 33422111 (-)
G44940 NA non-coding downstream 52630 33415533 ~ 33416219 (-)
G44936 NA non-coding downstream 120329 33343009 ~ 33348520 (-)
G44872 NA non-coding downstream 373431 33094397 ~ 33095418 (-)
G44864 NA non-coding downstream 378402 33088902 ~ 33090447 (-)
G44995 NA non-coding upstream 86843 33588590 ~ 33590089 (-)
G45007 NA non-coding upstream 113661 33615408 ~ 33615642 (-)
G45010 NA non-coding upstream 119705 33621452 ~ 33621738 (-)
G45035 NA non-coding upstream 168996 33670743 ~ 33671683 (-)
G45038 NA non-coding upstream 181076 33682823 ~ 33683081 (-)
AMCG00013488 NA other downstream 840945 32622153 ~ 32627904 (-)
G44719 NA other downstream 900897 32565760 ~ 32567952 (-)
AMCG00013425 NA other downstream 2726206 30730287 ~ 30742643 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other downstream 2982518 30483305 ~ 30486331 (-)
AMCG00013412 NA other downstream 2986523 30468630 ~ 30482326 (-)
G45037 NA other upstream 176477 33678224 ~ 33678907 (-)
AMCG00013531 NA other upstream 191097 33692844 ~ 33699712 (-)
AMCG00013578 NA other upstream 3377446 36879193 ~ 36885493 (-)
G45468 NA other upstream 3457430 36959177 ~ 36959914 (-)
G45571 NA other upstream 3629111 37130858 ~ 37223824 (-)

Expression


Co-expression Network