AMCG00013522


Basic Information

Item Value
gene id AMCG00013522
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33610167 ~ 33613789 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013522
ATGGTCTGGCTCGCAGGTGCCGGCGCGGCCTGTCCTCGCATCGCGCCGCGGCGCCGGTGGGGTGCTGTGCGGCCCCTGCAGCGGGAGCCCATGTCGCAGCCGGCGGGACGGGCCATCATTCACCACACCGCCCTGTCCCAGTGCCACAGCCCGGACTCCTGCGCCCAGGAGCTGCGGGACATCCAGAGCCTGCACATGCGGCACAGGGGCTTCGACGACATCGGCTACAACTTCCTGATTGGAGGAGACGGCAGCGTGTACGAGGGCCGGGGCTGGGGCATCGTGGGAGCTCACGCCAAGATGCACAATAACAACTCGCTGGGCATCGCTCTGATGGGCCACTTCAGCCATCAGCCCCCGACCCCCGCTGCCCTTTCCTCTGCCCAGCAGCTGCTCGAATGCGGGGTGGCACTGGGGCACCTGCACCCAGACTACACCCTGAGCGGCCATCGTGACGTCCGCAACACAGAGTGTCCAGGGGACCAGCTTTACAGCGCCATGCGCCAGTTTGCCCACTTCCAACAGTGACCCCCACTACGCCAGTGCCACTGAAAAGAGTGCAGACTGGAGGGTAGTGCTCTCCATGGTGAAAGACTGctggaaatattattttttctttctgctcaGGTAAAAAAGCACCCATATTAATGGCACGGCAGCTATGAACGTTCAGCTACATCCACAGCTCCAGTTACTGACTGCCCTTCAAATAACACGGCAGACTAGAGCACCAGAGCACTAGAGCAAGACATACACACTGTTCCCTTCTGCACTGTGGTAGCCTGTCCTCTCTGGAGCGTTAAAGGTCTTCCTGTCGGCCGGGCCACTTTTGGTTGCACCTTGTAGGACTTCAGACCTGGGTCAGAGGAAGTGGGGAAGAATCTCATGGTTGTGACTTCAGTGCTCTGGGCTGCCCTGCCACCTCAATTTTTCTTCCTCGTCTCATCTTCTGCCAGTCAGCTCTGGGCGAGCCTCTATAGGAGGAAGTATGGTTTGTTGTCAACAGGAATTGTGCTAGTCATATAACAGTCTGTGCCCACAGTGACCAtcttccacccccaccccagcaGTTATCTTTCAGTCACCTTATACTTCAATGATAAAATAtcatttgtttagttatttttcccCTGCTGTGGAGGTATATTTGTTGAAATATGCATCTGATTCAGTCTGCCAGCCTGGTCTTATCACAGtgtctcaatcctggtcctggaaacCCCCTGCACTGCagattttactttattactagtagggtacttaattgaaccctaattgaactaataatttgcctaatctgagatcttaaattatgttaaacagTTGTAGAGTGCATCTTGAGTATGAAACTGTAGATGGAACAACTTTTTATGAGctaaaattaagcaaatgagTTCAATTGagggttcagttaagtaattgagagctcagtctGAATGAAAAGCACCAGCCCATGGATTCCCTGGATTAAGAACCAGTGGTCTGCACTAAGATGTCCATTATGTCACCTTTTCTGTTGACTGCATGGAAGCGTGTTTCACGGTGTTTTACCTGCGTATTAATCGCAAATGACTCGTGGCCTTTTGTATTTGTCAGTCTCTGTGggatcatacattttaaaagcaagaaTTTAATAATGACTAATTTTAATATGACTTGGTTTATGATGGCTACAGAGCCTTTTTGAGAAACTCGTCATAAACAAGACCAAATATGGGTTTACAGTTGTACAAGTTACCATTTATACGTTGTTCATAATTCACGTAGTTCATAGCTCTATGCTATGTTGGGCAATTTGCAATGGTGCTGGTTTTGtgctatatctatatatacatatatttgtatatataaatatttgtattatatcttCTCCGAAGGTGATGTATGCTGTATATATTTCCCTTATTgtgtaaaaattgaaaaaagggatatgttttgtattatttaaatttaagataGTACTGTAGTAGAAACGGGATCTATCCTGTACAAAGCAAGGTCAGAATAGTCGCTTTTTAGTATATGATTTGGCTCCACTAGAGAGAGACATAACGCCATCTACAGAGTCTATCGACCAAAAGAATAGTATAGAATCAGAACTGGTTTGAAAAGGCAATGCGATTATATTACACGGGATGATTTTGTgtagaatgtttattttaatgtacttttaagGTTACTTTGATTCCAGGCTTTTTAACGTAGTTTGTGAGACCTTTTAAAGTTATTGTCTTGCAAGAGCTcgcaaaacatttaatttaatttaattctttTCCTCTAATAAATACCTGATC

Function

GO: NA

KEGG:

id description
K01446 PGRP; peptidoglycan recognition protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013522 True 2294 mRNA 0.46 3 33610167 33613789

Neighbor

gene id symbol gene type direction distance location
AMCG00013524 polr2i,rpb9,LOC102785323 coding upstream 14708 33592210 ~ 33595459 (+)
AMCG00013523 degs2,LOC106603795,LOC105011018 coding upstream 24988 33582554 ~ 33585179 (+)
AMCG00013519 NA coding upstream 71845 33537219 ~ 33538322 (+)
AMCG00013520 NA coding upstream 88933 33517155 ~ 33521234 (+)
AMCG00013514 NA coding upstream 145487 33452017 ~ 33464680 (+)
AMCG00013529 NA coding downstream 4511 33618300 ~ 33619481 (+)
AMCG00013521 snrpd2,SNRPD2,LOC106612977 coding downstream 20950 33634739 ~ 33637208 (+)
AMCG00013525 ppp5c coding downstream 34060 33647849 ~ 33661773 (+)
AMCG00013526 NA coding downstream 50288 33664077 ~ 33669293 (+)
AMCG00013530 NA coding downstream 56946 33670735 ~ 33693897 (+)
G44983 NA non-coding upstream 77012 33532772 ~ 33533155 (+)
G44954 NA non-coding upstream 169003 33439835 ~ 33441164 (+)
G44871 map3k10,LOC102787573 non-coding upstream 484718 33122020 ~ 33125449 (+)
G44869 NA non-coding upstream 506775 33103167 ~ 33103392 (+)
G44868 map3k10,LOC107554498,LOC107560156 non-coding upstream 507294 33102639 ~ 33102873 (+)
G45100 NA non-coding downstream 1319417 34933206 ~ 34933787 (+)
G45108 NA non-coding downstream 1437068 35050857 ~ 35057957 (+)
G45124 NA non-coding downstream 1506290 35120079 ~ 35120344 (+)
G45129 LOC105030512,LOC106584099,LOC106569888,LOC106613431,LOC106573797,LOC106609167 non-coding downstream 1527633 35141422 ~ 35142529 (+)
G45135 NA non-coding downstream 1561446 35175235 ~ 35175446 (+)
AMCG00013516 NA other upstream 161074 33442394 ~ 33449093 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other upstream 197326 33376520 ~ 33412841 (+)
G44870 NA other upstream 503572 33106292 ~ 33106595 (+)
AMCG00013478 NA other upstream 1154481 32423276 ~ 32455686 (+)
AMCG00013477 ppp1r37 other upstream 1209715 32393818 ~ 32400452 (+)
G45029 NA other downstream 81803 33695592 ~ 33699545 (+)
G45072 NA other downstream 500884 34114673 ~ 34114939 (+)
G45174 NA other downstream 1721101 35334890 ~ 35338052 (+)
G45209 LOC107575789 other downstream 2041513 35655302 ~ 35659833 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other downstream 2446966 36060755 ~ 36085843 (+)

Expression


Co-expression Network