AMCG00013523 (degs2,LOC106603795,LOC105011018)


Basic Information

Item Value
gene id AMCG00013523
gene name degs2,LOC106603795,LOC105011018
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33582554 ~ 33585179 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013523
atgGGGAACAAAATAACACGGGATGACTTCGAGTGGGTCTACACGGAGCAGCCGCACTCGACCCGGAGGAAAGAAATTTTGGccAAGCACCCTGAGATCAAGTCCCTGATGGGGCCAGACCCCAATCTGAAGTGGGTCGTGACAGCCATGGTGCTCACCCAGTTCCTGGCCTGCTATCTGGTGCAGGACCTCTCCTGGAAGTGGGTGCTGTTCTGGGCCTACGCCTTTGGGGGCTGCATCAACCACTCCCTCACCCTGGCCATCCACGACATCTCGCACAACGTGGCCTTCGGCAACAAGGACGCCCGGTCGAATCGCCTGTTTGGCATGTTTGCCAACCTGCCCATTGGCCTGCCCTACTCAGTCAGCTTCAAGAAGTACCACGTCGACCACCACCGCTACCTGGGTGGCGATGGCCTGGATGTGGACATCCCCACGGAGCTGGAAGCCCGCCTGTTCTGCACCCCCTTCCGCAAGGTCATCTGGCTCTTCCTGCAGCCCTTGTTCTATGCCTTGCGCCCCCTCTGCGTCAACCCCAAGCCGCTGTCTCGCATGGAGCTGCTCAATGGCTTCGTCCAGCTCATCTATGACCTCATCATCTACCAGCTGTGGGGGCTCAAGCCCCTGGTTTACATGGTGGCCGGTTCCATCTTATGCATGGGCCTGCACCCCATCTCAGGCCACTTCATCGCAGAGCACTACATGTACCTGAAGGGCTACGAGACCTACTCCTATTATGGCCCCCTCAACTTGATCACCTTCAACGTGGGCTACCATATGGAGCACCACGACTTTCCCAGCATCCCCGGGAGCCGCCTACCTCAGGTAAGCCTTTGCCAAAGACCAACAAACAGCCTGATTTTGTCAACCTCCTACTACTGCTACTTCTAG

Function

symbol description
degs2 Predicted to enable sphingolipid delta-4 desaturase activity and sphingosine hydroxylase activity. Predicted to be involved in ceramide biosynthetic process and sphinganine metabolic process. Predicted to act upstream of or within sphingolipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human DEGS2 (delta 4-desaturase, sphingolipid 2).

NR:

description
PREDICTED: sphingolipid delta(4)-desaturase/C4-hydroxylase DES2-like

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013523 True 891 mRNA 0.58 2 33582554 33585179

Neighbor

gene id symbol gene type direction distance location
AMCG00013519 NA coding upstream 44232 33537219 ~ 33538322 (+)
AMCG00013520 NA coding upstream 61320 33517155 ~ 33521234 (+)
AMCG00013514 NA coding upstream 117874 33452017 ~ 33464680 (+)
AMCG00013512 numbl,LOC106535595,LOC101072040,LOC106965209,LOC103154637 coding upstream 234859 33329311 ~ 33347695 (+)
AMCG00013510 NA coding upstream 297576 33272726 ~ 33284978 (+)
AMCG00013524 polr2i,rpb9,LOC102785323 coding downstream 7031 33592210 ~ 33595459 (+)
AMCG00013522 NA coding downstream 24988 33610167 ~ 33613789 (+)
AMCG00013529 NA coding downstream 33121 33618300 ~ 33619481 (+)
AMCG00013521 snrpd2,SNRPD2,LOC106612977 coding downstream 49560 33634739 ~ 33637208 (+)
AMCG00013525 ppp5c coding downstream 62670 33647849 ~ 33661773 (+)
G44983 NA non-coding upstream 49399 33532772 ~ 33533155 (+)
G44954 NA non-coding upstream 141390 33439835 ~ 33441164 (+)
G44871 map3k10,LOC102787573 non-coding upstream 457105 33122020 ~ 33125449 (+)
G44869 NA non-coding upstream 479162 33103167 ~ 33103392 (+)
G44868 map3k10,LOC107554498,LOC107560156 non-coding upstream 479681 33102639 ~ 33102873 (+)
G45100 NA non-coding downstream 1348027 34933206 ~ 34933787 (+)
G45108 NA non-coding downstream 1465678 35050857 ~ 35057957 (+)
G45124 NA non-coding downstream 1534900 35120079 ~ 35120344 (+)
G45129 LOC105030512,LOC106584099,LOC106569888,LOC106613431,LOC106573797,LOC106609167 non-coding downstream 1556243 35141422 ~ 35142529 (+)
G45135 NA non-coding downstream 1590056 35175235 ~ 35175446 (+)
AMCG00013516 NA other upstream 133461 33442394 ~ 33449093 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other upstream 169713 33376520 ~ 33412841 (+)
G44870 NA other upstream 475959 33106292 ~ 33106595 (+)
AMCG00013478 NA other upstream 1126868 32423276 ~ 32455686 (+)
AMCG00013477 ppp1r37 other upstream 1182102 32393818 ~ 32400452 (+)
G45029 NA other downstream 110413 33695592 ~ 33699545 (+)
G45072 NA other downstream 529494 34114673 ~ 34114939 (+)
G45174 NA other downstream 1749711 35334890 ~ 35338052 (+)
G45209 LOC107575789 other downstream 2070123 35655302 ~ 35659833 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other downstream 2475576 36060755 ~ 36085843 (+)

Expression


Co-expression Network