AMCG00013526


Basic Information

Item Value
gene id AMCG00013526
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33664077 ~ 33669293 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013526
ATGCTCAGGTTCCCCCTGCATGATCCTGACCGGCTGCGGCAGTGGCTGGTGAACATGCGCAGGGAGGACTGGCTGCCCTCCAAGTACCAGCACCTGTGTAACGAGCACTTTACCCCCAGTTGCTTCGACCTGCGCTGGGGCATCCGTTACCTGGCCAGCGACGCTGTGCCCACCCTCTTCCAGCACTCCGACGGCTCCGGGAAACGGAAATGCACAGACAAATCGGAGAGGAAAGCCAAGCGGGGAGCCCGGGGGAGCGCCAGACCGGGGGCGGCAGGCACTGGAGAGGTGCCTGTGGGGGAGGCGGTGGCCCTGGACACTGACGCCAATACCCTGCAGCTCTACACCATAACAGTTGACCCATCCCAGCCCGGCCAACCCCTACTTCTGGAGGCCAGTGCTCTGAGGCCCCAGACGGGCACTGTGCAGAGTGTGCTGCCTGTGGTGGATGGGCAGGGAACGGTGACGGGGGCAGAGGCGTTGAACTGCTTCCCTGTGGCACTGTTCCACAGAATGGATGGACTgggggaggtggagggagaGCAGGCAGAGGTGGTGGTGATTTCAGAGCAAGAGGAAGGAGTTGGGGTGCCCACAGAGGTCCAGGAGGTGGTTATAGGAGACGGGGCAAGCCAGGCAGTGCCCACCATGGCCTCAGCCCTCGTCCCCGACACCCCAGCGCAGTGCCCGGCTCTGGTCATCGAGAACGTGGCCCTGGAGACCCTAGTGGAGCCCCCCCCAGTGCAGCCAGAGCCCACTCTGCTCCCCCCACCGCCGGGCCTGCAAGACCCAGGAATCCAGATCATCGCCTACTTCGAGACCATCCCCAACGCCACCATCCTGCCCCCCGCCACCCAGACCAGCTCCCTGCCGCCCCCCGACACCGTTCTGTCCTCTGCCCTGTGCCCCCCCATTGTGTCCACGCTGCCCATCATCTCCAAGCACACCCCCTCGCCCAGCTCCCTGGTGCTCACCCTGGAGAAGGTGGAGCGAGGAGAGAAGGAGGTAGAGGAGGAGGGCGATGGAGAGGGGGATCAGCCAGAGCTTCAGGGCAAGCAGCTGGAAGAGCATCGGTACCACAGGAACAGCCTGAGCAAGGAGCAGCTGGAGGCGATTGTGGTGGAGCTGCAGAAGAAAGTGAAGGTCCTGCAGCAGAGACACCGCAGGCACCTAGACAAGCTGCTGGGGCTGGAGAGCACTGTGAGCCAGCTGAGACACAGCAACCTGCTGAGCGAGGAGAGGCTGAGGCTGCTGGAGAGGGCGTACCTTCAGACCAGTGCAGTGGTGTCAGAGGCAGGAGAGACGGTGGCCATTATCTGTGAGGAGGAGAATACTACCTACCTGTACACTGTCCCCtccacagaggaggaggaggaggagggcaggCAAGAGATAAAAAGCTGAGGAGCAGGAGTGACACCAGGACACCCTAATCATACCAAGACCGACCCCCCAACGCCCCCCTACAGCCCTGTATATGCCCACTCGCAGTCCTGTTTCAGGGATGGGTCCTCCACTCGTGGTCTACTGGGGGCTGAAAGTGAAAGTGCTGGGATCCAGCACACCTTCCCCCATCTCTGACAGAGAAGCCACACCTGGGAATCAACATGTGGCGGCTGGAGCCCACTCATAGTCTCACGTCACCTTGAGAAAGAGGGCTGCTGAAACACTCTGTCAATCTCTTGTCTCTGTGGACACACTGGCATCCCTTTTTGTGAAACGTGAAAGGACTTGATTAATTCagtgacttttgttttgtatccgTTTGACTATTCAGTCTTTTCTGCACAGGTGAAGCCAATACTACTGCTCTCTTATCTCAGTCAACCTCCCACTTGCCTTTCCACCCTTATTACTAATGACTTCCTGTGATCATGGCTAGGGGTCACAGTGGGGCAGGAAGACGAATCTAGGAGCCGTTGTAGGACTGGCAGCTGTGTATATTGCTTCCTTACCTAGAACGACCAATTGCTTTGGAGCTCCGTCTTGTCCATAATGAGAGATTTTGGTTTTTGATcatccttttttctgtttgtaccTGTAGCAGCTGGTCTCCTTTACACGGGTGGTGTAAAAGTATAAGAGATTCGTTTATATTCCATGTTAAACTCCTTCCAAAGGAGTATCTCTTAACACAAGGGGAAACTGTTAAAACTTGACTGAAATGCTTTAACAAAGAAGTGGACTGAATATGAAAAAAAGGCAGGGATCCTCTTATTGCACATACCAAGACATTATTAGGTCTATTCTCCGTTGATACCTGCCAGGGGGCGTATTTTTCAATCCCTTCCAGTAGTCTGTGGGATCTGACTTTTCAATTTTGGTAATGCCtatctgttctgtttttcacaACTGTGAGATGGATAGGCATGGGACTTCTGCACTATTGATTGGGGTGTCACAATTGGACCCTAAGGTGTTACAATAATTGCAACACTGGGTATTGAGTAATGTTtattaacttttgttttctgtcagcTCCTCCCCTGCTTTAAGAAAAAATGAGTTTTGCAAATACATCTCAAGAGGTGACTATGAGGACGTGCAATGGGGGAAGCATCTTGGTGTTGCTCACAAAGCTGCTCTGAAGCCTCTTTTTGAAGTGCTGTGCACTGACACCAGCTTGTGTCACACTAATATACTTCCCCAGCTACTCCACCTAATTTCAGCAATCAGCCTTGCATGGGATGAAATGCTATTGTTTCCTGGTATAGTAATTCAGTTTGTTGTCACACTAAATCTGAACCTTTGAAGAAACGGCAGGAGAATGGTAACAAGAAAAGCTGCACTAGGTGGGATTTAGGAAGTGGTGCAAATACTAAATAACTCCACACAGATTACTCCATGTGGAGGCTGTAAAATCTGTGACTGGGGAGCAGAGAAAGGCTCTTGTAGTAAATGTCTCCGACTCTGCTGTACCCTTGTGGAATTCAAAGGGCATTTTCTGTGCTCTGTACACAACTGACACTGTGCCACTATTGCTTAGGAGTTGAATGTTGTAAGAAAAAttggttagtttttttttaaactgtttgaacaacaaaatgtattgacaaatataataaacaaattaaagaattgtatcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013526 True 3087 mRNA 0.52 5 33664077 33669293

Neighbor

gene id symbol gene type direction distance location
AMCG00013525 ppp5c coding upstream 2304 33647849 ~ 33661773 (+)
AMCG00013521 snrpd2,SNRPD2,LOC106612977 coding upstream 26869 33634739 ~ 33637208 (+)
AMCG00013529 NA coding upstream 44596 33618300 ~ 33619481 (+)
AMCG00013522 NA coding upstream 50288 33610167 ~ 33613789 (+)
AMCG00013524 polr2i,rpb9,LOC102785323 coding upstream 68618 33592210 ~ 33595459 (+)
AMCG00013530 NA coding downstream 1442 33670735 ~ 33693897 (+)
AMCG00013532 zgc:172282,LOC107697541,LOC107758157,LOC107678250,LOC107555640,LOC107749639 coding downstream 388320 34057613 ~ 34058995 (+)
AMCG00013533 NA coding downstream 411890 34081183 ~ 34084117 (+)
AMCG00013540 gmfg,LOC105934520,LOC107090391,LOC103032687,LOC106520392 coding downstream 1449116 35118409 ~ 35129062 (+)
AMCG00013539 med29 coding downstream 1469056 35138349 ~ 35141343 (+)
G44983 NA non-coding upstream 130922 33532772 ~ 33533155 (+)
G44954 NA non-coding upstream 222913 33439835 ~ 33441164 (+)
G44871 map3k10,LOC102787573 non-coding upstream 538628 33122020 ~ 33125449 (+)
G44869 NA non-coding upstream 560685 33103167 ~ 33103392 (+)
G44868 map3k10,LOC107554498,LOC107560156 non-coding upstream 561204 33102639 ~ 33102873 (+)
G45100 NA non-coding downstream 1263913 34933206 ~ 34933787 (+)
G45108 NA non-coding downstream 1381564 35050857 ~ 35057957 (+)
G45124 NA non-coding downstream 1450786 35120079 ~ 35120344 (+)
G45129 LOC105030512,LOC106584099,LOC106569888,LOC106613431,LOC106573797,LOC106609167 non-coding downstream 1472129 35141422 ~ 35142529 (+)
G45135 NA non-coding downstream 1505942 35175235 ~ 35175446 (+)
AMCG00013516 NA other upstream 214984 33442394 ~ 33449093 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other upstream 251236 33376520 ~ 33412841 (+)
G44870 NA other upstream 557482 33106292 ~ 33106595 (+)
AMCG00013478 NA other upstream 1208391 32423276 ~ 32455686 (+)
AMCG00013477 ppp1r37 other upstream 1263625 32393818 ~ 32400452 (+)
G45029 NA other downstream 26299 33695592 ~ 33699545 (+)
G45072 NA other downstream 445380 34114673 ~ 34114939 (+)
G45174 NA other downstream 1665597 35334890 ~ 35338052 (+)
G45209 LOC107575789 other downstream 1986009 35655302 ~ 35659833 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other downstream 2391462 36060755 ~ 36085843 (+)

Expression


Co-expression Network