AMCG00013529


Basic Information

Item Value
gene id AMCG00013529
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33618300 ~ 33619481 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013529
ATGAGTGACGGCTGCGCTGGGGTCAACTCCACCGCTACCACCAAAGAGCCTCAGTGTGGTGCGCCGCCGGGGCAGGAGAGCGGGGGCGGCCGGCCGGCTGGGGAGGCTGGAGACGGGCCGCTCCAAAGCCGGTGTCGGGACCTCGCCTTCAAGAGGGGCAGCCGCCTGGCATCCTCCGCCGCCGGGCTGGCTTTTGCCGGGTCCCTGTACTGGCCGGTCCCTCCTTTCCTGTCTCTTCAGCAGCCGTCTCCCCACCCCGGCTACAGCTCGTCTTATTTCGGACCCCACGGCACTTACGCCGCTTCGGTGCTGTCGCAGACGTCTCACCAGCTGAGCGCTGCAGCGGCCGGCGTGGACAGGCTCCTCCAGGGGGGCGCCGAGTCTTCCTATGGCGGTCCTAGcggccaccaccaccaccaccaggtCACCGCGGCCGCGTCTTTTGCCGCTTCCTCGCTTCCCTGCGGTCTGTCTCTCCCCAGCACACTGAACCCGTGCTCCTTCAATCTGTTAGCCGGACAGGCGAGTTATTTTTTCTCCCACCACGTCCCACACCCAGCGGCTCACGGACCGCAGCCCCCAGCTCCTCCGTCCCCGGCCTCGCCACCCAAAGTGTCCCCGGTGGGACAGTTGCTTCACGGAAGGAGCGGGTCCAGCTATGTGGGGAGTTTGTCCGCTTCGGAGTTCCCCAATTATTTTACCCAAAGCAACCAAGGGAGCCCGTTCAATGCACTTCTGCACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013529 True 744 mRNA 0.66 2 33618300 33619481

Neighbor

gene id symbol gene type direction distance location
AMCG00013522 NA coding upstream 4511 33610167 ~ 33613789 (+)
AMCG00013524 polr2i,rpb9,LOC102785323 coding upstream 22841 33592210 ~ 33595459 (+)
AMCG00013523 degs2,LOC106603795,LOC105011018 coding upstream 33121 33582554 ~ 33585179 (+)
AMCG00013519 NA coding upstream 79978 33537219 ~ 33538322 (+)
AMCG00013520 NA coding upstream 97066 33517155 ~ 33521234 (+)
AMCG00013521 snrpd2,SNRPD2,LOC106612977 coding downstream 15258 33634739 ~ 33637208 (+)
AMCG00013525 ppp5c coding downstream 28368 33647849 ~ 33661773 (+)
AMCG00013526 NA coding downstream 44596 33664077 ~ 33669293 (+)
AMCG00013530 NA coding downstream 51254 33670735 ~ 33693897 (+)
AMCG00013532 zgc:172282,LOC107697541,LOC107758157,LOC107678250,LOC107555640,LOC107749639 coding downstream 438132 34057613 ~ 34058995 (+)
G44983 NA non-coding upstream 85145 33532772 ~ 33533155 (+)
G44954 NA non-coding upstream 177136 33439835 ~ 33441164 (+)
G44871 map3k10,LOC102787573 non-coding upstream 492851 33122020 ~ 33125449 (+)
G44869 NA non-coding upstream 514908 33103167 ~ 33103392 (+)
G44868 map3k10,LOC107554498,LOC107560156 non-coding upstream 515427 33102639 ~ 33102873 (+)
G45100 NA non-coding downstream 1313725 34933206 ~ 34933787 (+)
G45108 NA non-coding downstream 1431376 35050857 ~ 35057957 (+)
G45124 NA non-coding downstream 1500598 35120079 ~ 35120344 (+)
G45129 LOC105030512,LOC106584099,LOC106569888,LOC106613431,LOC106573797,LOC106609167 non-coding downstream 1521941 35141422 ~ 35142529 (+)
G45135 NA non-coding downstream 1555754 35175235 ~ 35175446 (+)
AMCG00013516 NA other upstream 169207 33442394 ~ 33449093 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other upstream 205459 33376520 ~ 33412841 (+)
G44870 NA other upstream 511705 33106292 ~ 33106595 (+)
AMCG00013478 NA other upstream 1162614 32423276 ~ 32455686 (+)
AMCG00013477 ppp1r37 other upstream 1217848 32393818 ~ 32400452 (+)
G45029 NA other downstream 76111 33695592 ~ 33699545 (+)
G45072 NA other downstream 495192 34114673 ~ 34114939 (+)
G45174 NA other downstream 1715409 35334890 ~ 35338052 (+)
G45209 LOC107575789 other downstream 2035821 35655302 ~ 35659833 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other downstream 2441274 36060755 ~ 36085843 (+)

Expression


Co-expression Network