AMCG00013530


Basic Information

Item Value
gene id AMCG00013530
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33670735 ~ 33693897 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013530
CGGCGTCTGCGTGCGTCAGTGTGCCGTTACGCCCCGGACTTTCCGTACTTTCCCGAAGTGTCTCCGAAGAGTTTCCAGCGAGAAAGAGAGACGAAGGAGGGATTTAACTCACCTAAAACAAGCCCTCGACTGACAGTGCAGCGGGATACACCCCCCAGCACAACTGTAACGGAGAGGGTGCAGTAGCAAGAGGGGACCCAGACACACACGGAGGAGTTGCACTGGAGCTGCTAACTTTTGGGACACCGTGCACCGTGTACACACTGGCAGACGCGTCCCTCCGCTTCACGGTTTAGactgatttgtttctttatttgccgatttgttttcttcatttgttcACCCCCGCGATGGCGGAGGGAGCATTTGCTACACATGTCAACCACATCAGCGCTCGGATGAAGAAGCTGATCAACTCCCCTCCTTCCATCAATCTGCGGAGGAAGAGTCGGCAGCAACCGCCCAGACGGAGCATGCACAACCGGGTGACACTGGAGAGAGTATTGGGTATTACCACCTCCAGCAGCAGTGGTTTAACCTGTGACCCCTCAACTGGACTAGTGGCCTATCCTGCTGGGTGTGTCGTGGTGCTCTTGCACCCCAAGAAGAACAAACAGACCCACATCCTAAATGTATCCAGAAAAACCTTCACTGCCTTGGCATTCTCACAGGATGGAAAATACTTGGTCACTGGTGAGtgcggTCACATGCCCTGTGTGCGGGTGTGGGACGTGGTGGAGAGGACTCAGGTGGCAGAGGTGCAGTGTCACAAGTACGGCGTGGCATGCGTAGCCTTCTCCACCAACAGCAGCTACATCGTGTCCGTGGGCTACCAGCACGACATGACCGTCAACGTGTGGGAGTGGAGGAAAGGTATCGTCATCGCTTCCAACAAGGTGTCCAGCCGCGTGACATCGGTGTCCTTCTCGGAGGACAACAGTTACTTTGTGACCGCCGGAAACCGACATGTCAAGTTCTGGTACCTGGATGCCTCCAAGGAGAGACGGGTGAATGGCACAGTGCCCCTGATTGGCCGCTCTGGGCTGCTGGGGGAGCAGCGGAACAGGCTGTTCTGCGGCGTGGCATGCGGCCAGGGGAAGATGGCCCAGAGCACCTTCTGTCTGACCAGCTCTGGGCTACTGTGCCAGTTCAACAACAAGAGGCTCCTGGATTCCTGGATCGACCTGAAGacATCTCATGCGAGCTGTGTGTCGGTGAGCCAGGAGTTTGTGTTCTGTGGCTGTGCGGACGGCACCGTACGTGTTTTCTGCCCTCAGACCCTGCACTACATCACCACTCTGCCTCGGCCGCACTGCCTGGGCGTGGACATCGCGCAGGGCATCGAGCCAGGCCATCTGTTTGCCTGGAACCCAGAAGCAGTGTACCCTGACACCCTGGCGGTGACCTATGACCCCGTGAGCTGCTGGCTAACCTGCGTGTACAGTGATCACAGCGTGTACATCTGGGATGTGCGAGAGATGAAGAAGGTTGGAAAGGTCAACTCCGCCCTCTACCACAACAGCTGCGTCTGGAGCGTGGAGaCCTACCCCGAACTTGATGACTCGTCTCAGGCCTGCCTACCCCCTGGCTCCTTCCTGACCTGCTCCTCCGACAACACAATCCGGCTGTGGCACTGTGACAGTGGGTCACCCCTCCCCAGCTCCGGCTACCACCGCAACCTCTACAGCCATGACCTGCTGAAAGTCGTGTATGTGGGAAACAGCACCCAGCACCTCCAGGAGGGCCCGGAGAGGGGGGAGGCCGGAGCTGCGGCCGACATCAAAGCGGGCATCAGGGTCCTGGGCATCAGCCCTGACGGGCAGCACCTGGCATCCGGAGACCGCAGTGGCAACCTGAGGATTTACAGCCTGGACTTCCTGGACGAGCTCGTGAAGGTGGAGGCCCATGACTCCGAGGTGCTGTGTTTGGAGTATTCCAGGCCAGAGACAGGGATGAACCTGCTGGCATCTGCGAGTCGTGACCGTCTCATCCACATCCTCAATGTGGAGAAACAGTACAGCCTGGAGCAGACTCTGGACGACCACTCCTCCTCCATCACCGCTGTCAAGTTCACAGGTGTTCACCCAGAGGTGCACATGGTGAGCTGCGGAGCCGACAAGAGCATCTACTTCCGCTCTGCAGAGAAGACATCGGAGGGCCTGAGTTTCTCGCGCTCCCATCACGTGGTGGAGAAGACCACCCTGTATGACATGGACCTGGACGCCACACGGAATCTCACCGCCATTGGCTGCCAGGACAGGAACATCAGGATCTACAACGTTCAGATGGACCCCTCTGGCATGTTCCTGGCCACCAGCTGCTCGGACAAGAACATCTGCATCTTCGACTTCTACACGGGCGAGTGCGTGGCCACCGTGTTCGGCCACTCAGAGATTGTCACCGGGATGAGATTCAGTCAGGATTGCAGGCACCTGATCACTGTTGCAGGAGacagTTGCGTGTTTGTGTGGCGGCTGGACTCCCAGATGACCAACTCTATGAGGAAGAGGCTGGCCGAGATCAGGCACagcgggctccagcagggggcgcCAAAGACCTCGGCCAAACCCGACCCCATCAGGAGACAGACCTACATTGCCGTGCCCCGCAGCACCCTGGCACAGACGGGCGAGGAGCAAGAGGCgatggaggaggaagggggCATCAGTGAGGATGAGCAGGAGGAAGAGTCCCTGCAGACCCCTGCCAGGGACACCTCCCAACCTGATTTCTTGGACCCTATGTTCCTGCAGACCAATGGGAGATTGCCGATGTGGGCTAAAAGACTGGGTGCCGCCGAGAGTTCAGCGGACGAGACGGTGGAGCAGCCTGCCGCCGAGCAGAACCCCTACCGTCCACGGGGCCGCTGGGCCGAGCAGTCAGATCCCCAGGCCATCCGCACCGTGCTGGCCACCCACAGCCTGCAGCTGCCCATGTCCCCCAGCCCCCAGAGAGAGGAAGGCCCCTCCCAGGACAGTCCGGCCCCCGATGACTCCAACTTCCACCCCCAGAGCCTGGACAGTCTGCTGggaatggaggaggaggaagaggaggagaaggagggagagggagagGTGGCAGAGGGCCAGTTCGTGGGCAGTTTCCAGCGGCCGGGGTTCCTGCAGCTGACGGACTGTGAGGATCTCTTCCCCCAGGATCTGGACTCCCCAGAAACCAGCGACGACGTGCTGTACCCGGCCAACAGCACCGCCCTGTCCACTGCCACTGACAGCCAGGCCTTCAGCCAGGATCAGCACCAAGACGATGTGGATTCCCTGAGTCAGGTGAGCTCAGCGGGCAGCTCTGGAGTtgacgaggaagaggaggaggaggcaggacCTCGCCCCGGCATGACCCCAGAACAGGAGACTTCTCTGCTGCACCACTTTGGCATGCTGGGGGACGACCTCTCCAATGAGAACATCTTCCTGAACCCTCGCCTCAGCATCTCCACCCGCTTCCTGTCACGCTGCCTGGGCCGCACCAGACTGGGTGCTGCCTTTGTGCCCCGGCTGGGAGCGTCCCACTCCAGGATCTCGGAGGAGGATGCGAGCAGCAGGCCCCCCAGCCAGGCCAAGAGCACTGCTGAGgtCGCTTACAAGCCCGTTTCGGAAGAGTCCTGCTCAGAGAAAGAACTGAAGCCCAGAGCACGGAAGAGAAGCTCCTCGTTAACGAACTGTAGACGGCCACGGAGCTCATTGGGCAACCTGGGAAGAGGCGAAAACCCGCTGACGGTGGTCTCATGCGACTCCCAGACTGCCACCCTGCAGCCGTCCCAGGACAAAGCTCACCCCGCGGCTCGCAGACAGTCTCTGCCCGGGCAGAGTAAGGAGCCCCTGGCGCTCCCCGCCCGGCCAACCCGGCAGAGCTACATGTGCCCTACGGCCAGTTCCCGCGCCAAGATGTCCCGCTGCAGCTCCATGGGTGAGAACCTCAACAAGACCACGGAGGAGCCGCCCAAGGCCAACAACCCAGGATCGTCCTCCATGGCGGACCTGGGCCGAGACCAGGAACACAAAGAGAACCTGCCCCCAGCCGGGAACCACGCCGCTCCTGTGAACATTcagccccctcccctcccagGCAACCACCTCGCCAGGGCAGGCCTCCACCTCGACCTGCCCCTCCCACCTGCTCCCGTCCCCGAATGCCCCCTCGCCGCCTCCCAGCCGCCCCCTGTGGCCCCCAAACCCCGGCGCCGCTCGATCGATGCAGTCCGCCCCCCCGCACTGGTCACCCCCACTGAGATGAGGTCGCTGGGCAAGGAAGGGAAGAGTTACATCAGCAGCATCGAGGAGATCCTGAGCCCCATGCCCCGCAGCCCGGCCCGACTCCGACGCAGCATGGCCGGCAGCAGCCCTGCCAGCCCCCAGACCCCTGCCAGACTGCAGAACCATATGCTGCCCCAGGCCAGAGCGGCCCCCAGGGAGACTGTCACGCCTGCCCCCGTCGGGAAGGAGTCGGAAAACTCCAGAGAGCAGCCACGGCCCTCCTACCCCTCCCAACCCCCCGGGGGCTCCACGCAGACCGGGCCCCCGCCTGCTGAACACGCAGCTCCCAAGGACACAGGAGTCGCGAGTGAGGCGGCCAACCTGCAGACCTGCAAGCAGATCGTGAACGAGCTGCAGCAGTGCATGAAGAAAGCGGTGTGCCTGTATGGCAAGCTGCGCTCGGCGTCAGACAGCCCGGAGCAGCAGCTGCAGATGAGGACGATCCTCTCGCAGGCCTTCTCCGCGGTCCAGGTGGAGTTGGACGGCGTGTGCAGCCCGAACAAGAGCTGCCACCCTGGGCCCAGGCCGGAAACCTCACCCACGCCCTCGCCCTCCCGCCAGCTAAAGGACGAGCGCACCGTGGCCCTGCTGGAGAGGTACTCCGAGATGCTGCTGAGGATCACGGAGAGGAAACTGGACTGTAACTGAGGGGTCCGCTCACCCCTCGCCCCTCTGATTTGCCTTTTGCCCAGACCAAACCCCCCAGAGACCATGGATCCCGGTCCCGGATATCCATCGGTGCCTCATCTTACTTTAGTTTCCCCATCGTGTGTTTAAAAGAAGCCATAGTCAGACCTGTATTGTAACTGTCTGTGAGATTCCTTGTATGTGTTGTAGATAACATGAACTCCTGAGCTGTGTAAGGAATAAATGTCCAAACCCCTCCCAAAGAAAAGCACATGCAGGAAAAAAGTAGTCATTATGAGTCCAGGGCAAAATTCAGAAACTGAGAGCTGTGCGGGAACAAAACCAAGACGCCACACCCAAGGTGGACTTTGGGACCACCGTCCACGAGCACATCGGCCTACTGTGGtgcccacccacccacc

Function

GO: NA

KEGG:

id description
K21762 WDR62; WD repeat-containing protein 62

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013530 True 5320 mRNA 0.61 32 33670735 33693897

Neighbor

gene id symbol gene type direction distance location
AMCG00013526 NA coding upstream 1442 33664077 ~ 33669293 (+)
AMCG00013525 ppp5c coding upstream 8962 33647849 ~ 33661773 (+)
AMCG00013521 snrpd2,SNRPD2,LOC106612977 coding upstream 33527 33634739 ~ 33637208 (+)
AMCG00013529 NA coding upstream 51254 33618300 ~ 33619481 (+)
AMCG00013522 NA coding upstream 56946 33610167 ~ 33613789 (+)
AMCG00013532 zgc:172282,LOC107697541,LOC107758157,LOC107678250,LOC107555640,LOC107749639 coding downstream 363716 34057613 ~ 34058995 (+)
AMCG00013533 NA coding downstream 387286 34081183 ~ 34084117 (+)
AMCG00013540 gmfg,LOC105934520,LOC107090391,LOC103032687,LOC106520392 coding downstream 1424512 35118409 ~ 35129062 (+)
AMCG00013539 med29 coding downstream 1444452 35138349 ~ 35141343 (+)
AMCG00013543 NA coding downstream 1520737 35214634 ~ 35217638 (+)
G44983 NA non-coding upstream 137580 33532772 ~ 33533155 (+)
G44954 NA non-coding upstream 229571 33439835 ~ 33441164 (+)
G44871 map3k10,LOC102787573 non-coding upstream 545286 33122020 ~ 33125449 (+)
G44869 NA non-coding upstream 567343 33103167 ~ 33103392 (+)
G44868 map3k10,LOC107554498,LOC107560156 non-coding upstream 567862 33102639 ~ 33102873 (+)
G45100 NA non-coding downstream 1239309 34933206 ~ 34933787 (+)
G45108 NA non-coding downstream 1356960 35050857 ~ 35057957 (+)
G45124 NA non-coding downstream 1426182 35120079 ~ 35120344 (+)
G45129 LOC105030512,LOC106584099,LOC106569888,LOC106613431,LOC106573797,LOC106609167 non-coding downstream 1447525 35141422 ~ 35142529 (+)
G45135 NA non-coding downstream 1481338 35175235 ~ 35175446 (+)
AMCG00013516 NA other upstream 221642 33442394 ~ 33449093 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other upstream 257894 33376520 ~ 33412841 (+)
G44870 NA other upstream 564140 33106292 ~ 33106595 (+)
AMCG00013478 NA other upstream 1215049 32423276 ~ 32455686 (+)
AMCG00013477 ppp1r37 other upstream 1270283 32393818 ~ 32400452 (+)
G45029 NA other downstream 1695 33695592 ~ 33699545 (+)
G45072 NA other downstream 420776 34114673 ~ 34114939 (+)
G45174 NA other downstream 1640993 35334890 ~ 35338052 (+)
G45209 LOC107575789 other downstream 1961405 35655302 ~ 35659833 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other downstream 2366858 36060755 ~ 36085843 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_02616905_02658519 WDR62 coding CI01000092 null 2616818 ~ 2658874 (-)