AMCG00013532 (zgc:172282,LOC107697541,LOC107758157,LOC107678250,LOC107555640,LOC107749639)


Basic Information

Item Value
gene id AMCG00013532
gene name zgc:172282,LOC107697541,LOC107758157,LOC107678250,LOC107555640,LOC107749639
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 34057613 ~ 34058995 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013532
ATGGACAGGCTGCTGTTCTCCTTGCTGGTGCTCACCATGTCAGTGAAGGCACAGCTATGCCCTAAGCGCTGCATGTGCCAGAACCTGTCCCCCTCCCTGGCCATCCTCTGTGCCAAGACCGGTCTGCTCTTTGTACCCACTGTCATCGACCGAAGAACAGTGGAGCTGAGGCTGACTGAAAATTTCATCACGGTGGTAAGGAGGAAAGACTTTGCCAACATGACCAGCCTCTTGCACTTGACTCTGTCCAGGAACACCATAAGCCAGATTATGCCTTACACTTTTGCCGACCTCAACCGGCTCCGGGCCCTCCACTTGGACAGCAACCGCTTGACTGTAATCGGGGACGAGCACTTCCGGGGCCTGACCAATCTGAGGCACCTGATTCTGAGCAACAACCAGCTGCACGACATCTCGCCCAAGTCGTTTGATGACTTCCTGGGCACCCTGGAGGACCTTGACCTGTCTTACAACAACTTGGTGCACATTCCCTGGGACACCATCTCGAGGCTCACCAACGTCAACACCTTAAACATGGACCACAATTTGATAGAACACGTTCCTCTGGGGATCTTCGCCAACTTGCACAAGCTGGCCCGCTTGGACATGACCTCCAACAAACTGAAGAAGATCCCCCCTGATCCTCTCTTCCTGAGAATCCCTGTCTATGCCAAATCCAAAGGGTCGCCCCTGACATCGCTGATCCTCAGCTTTGGGGGGAATCCTCTCCACTGCAACTGTGAGCTGCTTTGGCTCCGGCGCCTCACCCGGGAAGATGACCTGGAGACCTGTGCTTCCCCCCCAGACCTGATGGCCAAGTATTTCTGGACCATCCCCGAGGAGGAGTTCATCTGCGACCCCCCGGTGATGACCAGAAAGTCACCCAAGACCTTTGTCATGGAAGGGCAGCCTGTTAGCTTGAAGTGCAAAGCCAATGGTGATCCAGACCCAGACATCCACTGGATCTCCCCCGAGGGAAGGCTGATTTCCAACACTTCCCGGATGACCCCCTACAGCAATGGCAGCCTGGAGATCAACATCACCTCAGTGAAGGACACGGGCACCTTCACTTGCATCGCTTCCAATGCCGCTGGGGAGTCCACGGGCCACGTGGAGCTGGTGGTCAACCCGTTGCCTCACCTAGCCAACAGCACCAGCCGGGTCCGAGAGCCAGAACCCGGGCCCTCTGACATCCTTACCTCCGCCAAGTCCACTTCCCCCTCCGGCAACGACACCAAGATGCAGGACAAGAATGTAGTGCTGGCGGAGCTCACCATGAACTCGGCTCTTGTCAAGTGGCCATCACAGCGCCACGTCCCAGGGATCAGGATGTACCAGGTCCAGTACAACAGTACTACTGACGACACCCTCGTCTACAGGTAA

Function

symbol description
zgc:172282 Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in cell surface. Predicted to be integral component of presynaptic active zone membrane.

NR:

description
leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein precursor

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013532 True 1383 mRNA 0.56 1 34057613 34058995

Neighbor

gene id symbol gene type direction distance location
AMCG00013530 NA coding upstream 363716 33670735 ~ 33693897 (+)
AMCG00013526 NA coding upstream 388320 33664077 ~ 33669293 (+)
AMCG00013525 ppp5c coding upstream 395840 33647849 ~ 33661773 (+)
AMCG00013521 snrpd2,SNRPD2,LOC106612977 coding upstream 420405 33634739 ~ 33637208 (+)
AMCG00013529 NA coding upstream 438132 33618300 ~ 33619481 (+)
AMCG00013533 NA coding downstream 22188 34081183 ~ 34084117 (+)
AMCG00013540 gmfg,LOC105934520,LOC107090391,LOC103032687,LOC106520392 coding downstream 1059414 35118409 ~ 35129062 (+)
AMCG00013539 med29 coding downstream 1079354 35138349 ~ 35141343 (+)
AMCG00013543 NA coding downstream 1155639 35214634 ~ 35217638 (+)
AMCG00013546 NA coding downstream 1248369 35307364 ~ 35309555 (+)
G44983 NA non-coding upstream 524458 33532772 ~ 33533155 (+)
G44954 NA non-coding upstream 616449 33439835 ~ 33441164 (+)
G44871 map3k10,LOC102787573 non-coding upstream 932164 33122020 ~ 33125449 (+)
G44869 NA non-coding upstream 954221 33103167 ~ 33103392 (+)
G44868 map3k10,LOC107554498,LOC107560156 non-coding upstream 954740 33102639 ~ 33102873 (+)
G45100 NA non-coding downstream 874211 34933206 ~ 34933787 (+)
G45108 NA non-coding downstream 991862 35050857 ~ 35057957 (+)
G45124 NA non-coding downstream 1061084 35120079 ~ 35120344 (+)
G45129 LOC105030512,LOC106584099,LOC106569888,LOC106613431,LOC106573797,LOC106609167 non-coding downstream 1082427 35141422 ~ 35142529 (+)
G45135 NA non-coding downstream 1116240 35175235 ~ 35175446 (+)
G45029 NA other upstream 358068 33695592 ~ 33699545 (+)
AMCG00013516 NA other upstream 608520 33442394 ~ 33449093 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other upstream 644772 33376520 ~ 33412841 (+)
G44870 NA other upstream 951018 33106292 ~ 33106595 (+)
AMCG00013478 NA other upstream 1601927 32423276 ~ 32455686 (+)
G45072 NA other downstream 55678 34114673 ~ 34114939 (+)
G45174 NA other downstream 1275895 35334890 ~ 35338052 (+)
G45209 LOC107575789 other downstream 1596307 35655302 ~ 35659833 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other downstream 2001760 36060755 ~ 36085843 (+)
AMCG00013566 NA other downstream 2279267 36338262 ~ 36370087 (+)

Expression


Co-expression Network