AMCG00013533


Basic Information

Item Value
gene id AMCG00013533
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 34081183 ~ 34084117 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013533
ATGATTCCATCTACCAGTCAAGACTTCTTGGTGAAGGACCTGGTTTCTGGCCGGGAGTACGACCTGTGTGTCCTGGCGGTGTACGATGATGGGATCACCTCTCTGACGGCCACCCGTGTGGTGGGCTGTGTCCAGTTCACCACGGAACAAGAGTACAGCCAGTGCCAGTCCATGCACACGCAGTTCCTGGGCGGCACCATGATCATCATCATCGGGGGCATCATCGTGGCCTCAGTGCTGGTCTTCATCATCATCCTGATGATCCGCTACAAGGTCTACAACAACCAGGGGGAGCCCAGCAAAGCCAAGGTCAGCAATGTTTGTTCCCAGACCAACGGAGGCCAGGGCAGTCAAGTCACCAGGTCGGCTTCCAAAGGTGCTGAGAGCCAGGAGGAGCAGGTTGTGGCCAGCTCTACGGTGGGAGGGGGAGGCCCCGGGGTGATCAGCATCAGCAGTGCGGGGGTGAGCGTCAGCGGAGCTGTCAAAGACTCCAACACCGTGACCTTGGTGGTGGACTGCGAGAAAGTCACGCAGCTCTCAGAGATGACCGCGGAGGACATTGTGTCGCCCGTGCAGAGGCGAAAATCCAGGACTAGTGTCGAGCTCATGAGGCAATCCTCACTGTCCTCTAAAGAAGCACGGGGTGGAGAAGCACTGGGAGACTGTCTGTGTTGCCCTCTGCTCCTGCCCCATCTCCCCCAGCACTACCTGGCTGCAAAAGCACTGGATGGAGATTCAGCAGAAGGTGAGAAGTGGGAGGTGGGGCACAAAGGGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013533 True 777 mRNA 0.58 2 34081183 34084117

Neighbor

gene id symbol gene type direction distance location
AMCG00013532 zgc:172282,LOC107697541,LOC107758157,LOC107678250,LOC107555640,LOC107749639 coding upstream 22188 34057613 ~ 34058995 (+)
AMCG00013530 NA coding upstream 387286 33670735 ~ 33693897 (+)
AMCG00013526 NA coding upstream 411890 33664077 ~ 33669293 (+)
AMCG00013525 ppp5c coding upstream 419410 33647849 ~ 33661773 (+)
AMCG00013521 snrpd2,SNRPD2,LOC106612977 coding upstream 443975 33634739 ~ 33637208 (+)
AMCG00013540 gmfg,LOC105934520,LOC107090391,LOC103032687,LOC106520392 coding downstream 1034292 35118409 ~ 35129062 (+)
AMCG00013539 med29 coding downstream 1054232 35138349 ~ 35141343 (+)
AMCG00013543 NA coding downstream 1130517 35214634 ~ 35217638 (+)
AMCG00013546 NA coding downstream 1223247 35307364 ~ 35309555 (+)
AMCG00013545 NA coding downstream 1241874 35325991 ~ 35331505 (+)
G44983 NA non-coding upstream 548028 33532772 ~ 33533155 (+)
G44954 NA non-coding upstream 640019 33439835 ~ 33441164 (+)
G44871 map3k10,LOC102787573 non-coding upstream 955734 33122020 ~ 33125449 (+)
G44869 NA non-coding upstream 977791 33103167 ~ 33103392 (+)
G44868 map3k10,LOC107554498,LOC107560156 non-coding upstream 978310 33102639 ~ 33102873 (+)
G45100 NA non-coding downstream 849089 34933206 ~ 34933787 (+)
G45108 NA non-coding downstream 966740 35050857 ~ 35057957 (+)
G45124 NA non-coding downstream 1035962 35120079 ~ 35120344 (+)
G45129 LOC105030512,LOC106584099,LOC106569888,LOC106613431,LOC106573797,LOC106609167 non-coding downstream 1057305 35141422 ~ 35142529 (+)
G45135 NA non-coding downstream 1091118 35175235 ~ 35175446 (+)
G45029 NA other upstream 381638 33695592 ~ 33699545 (+)
AMCG00013516 NA other upstream 632090 33442394 ~ 33449093 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other upstream 668342 33376520 ~ 33412841 (+)
G44870 NA other upstream 974588 33106292 ~ 33106595 (+)
AMCG00013478 NA other upstream 1625497 32423276 ~ 32455686 (+)
G45072 NA other downstream 30556 34114673 ~ 34114939 (+)
G45174 NA other downstream 1250773 35334890 ~ 35338052 (+)
G45209 LOC107575789 other downstream 1571185 35655302 ~ 35659833 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other downstream 1976638 36060755 ~ 36085843 (+)
AMCG00013566 NA other downstream 2254145 36338262 ~ 36370087 (+)

Expression


Co-expression Network