AMCG00013534 (lrfn1,LOC106613031)


Basic Information

Item Value
gene id AMCG00013534
gene name lrfn1,LOC106613031
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 34532430 ~ 34544065 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013534
ATGGAAAGGCTTGTCTTGTGTGTGCTGGTGTTTGGAGTGTTGGTGAAGGCACACAACTGTCCGGGTCGCTGCATTTGCCAGAACATCTCCCCAACCCTGACCCTGCTGTGTGCCAAAACTGGACTCCTGTTTGTGCCACCGACGATCGACCGCAAAACAGTGGAGCTGCGGCTGACGGACAACTTCATCACCGTCATCCGCCGGAAAGACTTCTTCAACATGACCAGCCTGGTCCACCTCACCCTGTCCCGGAACACCATCAGCCAGATCATGCCGCATGCCTTTGTGGGCCTCAAATCCCTGCGTGCCTTGCACATGGACGGCAACCGCCTGAGCGCCATCAAGAACGACCACTTCAAGGGCCTCATCAACCTCCGCCATCTCATCCTGGGGAACAATCAAATCCACCAAGTGGCGTCGGCCTCTTTCGACGAGTTTGTGGCGACCATCGAGGACCTGGACCTCTCCTACAACAATCTGCGGACTCTCCCCTGGGAAGCCATTGCCAGGATGACCAACATCAACACGCTGACGTTGGATCACAACCTCATCGACCACATCGAGGCGGGCACGTTCACCCTGCTCAGCAAGCTGGTACGCCTGGACATGACCTCCAACAGGCTCCAGAAGCTGCCCCCCGACAGCTTGTTCCAGCACGCTCAAGTCCTAACGGATGCCAAGGGCTCGAACCCTTCCTCTTTGGCGGTGAGCTTTGGTGGTAACCCCCTACACTGCAACTGTGAGCTACTGTGGCTCCGCAGGCTCACCAGGGAGGATGACTTGGAGACGTGCGCCTCCCCCGAGCACCTCATGGACAAATACTTCTGGTCCATCCAGGAGGAGGAGTTCATCTGCGAGCCTCCTCTGATCACCAAGCACCAGGCTTCTAAGCCCTATGTCATGGAAGGCCAGGGGGTGACACTGAAGTGCAAAGCAATGGGGGACCCCGACCCCGCCATCCACTGGCGCTTCCCCGACGGCAAACTGGTTCACAACAACTCCAGGACCATCCTGTACGACAATGGCACCCTGGACATTCTCATCACCACCCTGAAGGACAGCGGCTCTTTCAGCTGCGTGGCCTCCAATGCGGCCGGCATAGCCACCGCCACTGTGGAGATCAACATGATCCCGCTGCCGCTGTTTGTCAACAACACCGGCCACATGAAGGAGCCTGACCCTGGCCTCTCTGACATTACCACCTCTTCCAAGTCCGGCAGCAACGACACCAAGAACCAGGACAAGAAAGTGGTGGCTGCCGAGCTGACCTCGTCCTCCGCCGTCATTCGGTGGCCCTCTGAGCGCCACATCCCTGGCATCCGCATGTACCAGATCCAGATGATTCCATCATCCAGCAAGACGTTCCTGGTGAATGACCTGGCGGCAGGCCGGGAGTACGACCTGTGTGTCCTGGCGGTGTACGACGATGGGATCACCTCTCTGACGGCCACCCGTGTGGTGGGCTGCGTCCAGTTCAACACAGCCAGCGAGAACAGCCAGTGTCGCTTCATCCACAGCCAGTTCCTGGGTGGCACCATGATCATCATCATTGGTGGCATCATCGTGGCCTCCGTGCTGGTCTTCATCATCATCCTGATGATCCGCTACAAGGTCTACAACAACCAGGACGAGCACTGCAAGGCCAAGGTGAGCCACGGCTGCTCTCAGACCAACGGCAGTCAATCAGCCATGCAGCGTTCGGCCTCCAAGCAGACAGAGGACGCTCAcgagctccatgacctcagtaAGGAGGCCAAGGAGTGCAAGATGCTGGTGCTGAAGGTGGACTGCGAGAAACGTGAAAGCCCCCCTGCCACCACCGCCATCCTGGAGGTGGAGCTGCCCCCCATCCCCgctgagaagaagaagaagaggcgCACCAGTCTGGACGTGCAGCCCACCACTGCTGCTACCGCTGCGCTCTTCTCCTCCGAGGATGCCCAGACTGACAGCAGCCTGACGGGCTCCACCATGTCCCTCTGCCTGATCGGCCCCAACGCCGGCAGCAAGGAGGCTCCCCGGCTCAGGGACAAAAAGAGCGCCTTGGCCAACATAGGTCTCCTGCCCAGCGACATCGCAAGAACTCGGCACCGGTTCTCCTTCGATGGTGACTACTCCCTGTTTCAGAGTCACAGTTACCCGCGGAGAGCAAGGACGAGAAGACACATGTCCTCCACCCAGCTAAACGTGGACTCTTCGCCACTGGCCAACCGAAGGGTGACCTTCAGCAGCACAGAGTGGATGCTGGAGAGCACGGTTTGA

Function

symbol description
lrfn1 Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in cell surface. Predicted to be integral component of postsynaptic density membrane. Is expressed in brain and neurons. Orthologous to human LRFN1 (leucine rich repeat and fibronectin type III domain containing 1).

NR:

description
PREDICTED: leucine-rich repeat and fibronectin type III domain-containing protein 1-like

GO: NA

KEGG:

id description
K16354 LRFN1, SALM2; leucine-rich repeat and fibronectin type-III domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013534 True 2262 mRNA 0.59 2 34532430 34544065

Neighbor

gene id symbol gene type direction distance location
AMCG00013528 LOC107709035 coding downstream 922810 33596330 ~ 33609620 (-)
AMCG00013527 NA coding downstream 955826 33557031 ~ 33576604 (-)
AMCG00013517 NA coding downstream 1091494 33429105 ~ 33440936 (-)
AMCG00013513 LOC106580829,LOC106612625,LOC105026889 coding downstream 1165555 33354581 ~ 33366875 (-)
AMCG00013511 NA coding downstream 1268554 33246164 ~ 33263876 (-)
AMCG00013535 NA coding upstream 12 34544077 ~ 34648703 (-)
AMCG00013538 NA coding upstream 447817 34991882 ~ 34992115 (-)
AMCG00013536 NA coding upstream 511552 35055617 ~ 35057435 (-)
AMCG00013537 LOC108246317 coding upstream 522184 35066249 ~ 35067931 (-)
AMCG00013542 samd4b coding upstream 537446 35081511 ~ 35105834 (-)
G45082 NA non-coding downstream 51643 34480550 ~ 34480787 (-)
G45076 NA non-coding downstream 212916 34318890 ~ 34319514 (-)
G45062 NA non-coding downstream 562111 33970042 ~ 33970319 (-)
G45055 NA non-coding downstream 648685 33883446 ~ 33883745 (-)
G45048 NA non-coding downstream 816624 33714039 ~ 33715806 (-)
G45092 NA non-coding upstream 247399 34791464 ~ 34792001 (-)
G45096 NA non-coding upstream 365307 34909372 ~ 34909602 (-)
G45098 NA non-coding upstream 379060 34923125 ~ 34923555 (-)
G45099 NA non-coding upstream 387918 34931983 ~ 34932365 (-)
G45102 NA non-coding upstream 428417 34972482 ~ 34972706 (-)
AMCG00013531 NA other downstream 832718 33692844 ~ 33699712 (-)
G45037 NA other downstream 853523 33678224 ~ 33678907 (-)
AMCG00013518 NA other downstream 1030683 33468849 ~ 33501747 (-)
AMCG00013488 NA other downstream 1904526 32622153 ~ 32627904 (-)
G44719 NA other downstream 1964478 32565760 ~ 32567952 (-)
AMCG00013578 NA other upstream 2335128 36879193 ~ 36885493 (-)
G45468 NA other upstream 2415112 36959177 ~ 36959914 (-)
G45571 NA other upstream 2586793 37130858 ~ 37223824 (-)
G45614 supt5h other upstream 2938851 37482916 ~ 37483608 (-)
G45617 LOC100846954 other upstream 2944664 37488729 ~ 37538310 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008812 lrfn1 coding NC_007126.7 CM002899.2 45994123 ~ 46132191 (+)