AMCG00013539 (med29)


Basic Information

Item Value
gene id AMCG00013539
gene name med29
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 35138349 ~ 35141343 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013539
AACGTCATGAAGATCGCATCTCTAAATTTAGGGCACAATACGGCAATTGACAATGGAGTTAAGAGCAGTGATGCCACTGTCCAGAGATTTGACAAAAGCCTGGAGGAGTTCTATGCCCTGTGTGACCAGCTGGAGCTGTGCCTACGGTTGGCCTATGAGTGCCTTTCCCAGAGCATCGACAGCGCCAAGCACTCGCCCAACCTAGTCCCCACCGCCACCAAGCCAGACACAGTGCAGACGGAGAGCCTGTCCTACTCGCAGTATCTCAGCATGATCAAGTCCCAGATCTCCTGTGCCAAGGACATCCACAATGCCCTGCTGGAATGCTCTAAGAAGATTGCAGGCAAGGGGCAAGCCCAGGGCATCCTCTGAACCCCTTGCCCACCACAGCCATCTGTCCTGTCTGTTTTTCTATCGCTTTTCTACTGATCTGTGTTAATGCCTATTTTGAAATACAAGCTGTACATGTAGTCTGGGATCAACAGCCTGTTTAATGCGAGATCAGTGTTCTTCTTGGAGCAGATAATTAGTGTTGGACAACCACAGCCCTGGAGAACCTAAACTTCAGGTTTTACAGCTCTGAATTAATTGCTGAagtcttgaaataaatatatgtttaaatttatGTTTGAAGTAAATAATAGGCATTTGTGGTCCTGGGAGGCTGCAGATGTTAATGGTTTTTTATGCTAATGCCCCCTCTCAATCATCTTTTAAGtagttaatcaaataaaatactccCTTAACTAGTCCAAATGAAACTGTTACATGAGTCTTTTGGAATTGAAGTTTTTGGCCGACCCTGTTCTAGTGCTTCACAAATTCAGCACTTGCATCGACTGGCCACTAGAtggaagaaattattatttttttagactTGGTAAAAGCACCTGCTTTGCAAAGGGGTTGTGGAACAACATAAGAAACCAAAAACTATGCATCAAGATGATGTGTGGAAAAATTGTTTCAGGTTAAtgtttatagatttgttttcaaggagaaaaataaaatgtctgagGAATTGAGTagaagaataaatgaaaataaataaaattcagcATGTTATGGAAGTAATTTACATCTAAATATTGTTCACACAACATACCTTAAacaaaactttatatatatatatatatatata

Function

symbol description
med29 Predicted to enable transcription coregulator activity. Acts upstream of or within eye photoreceptor cell development. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED29 (mediator complex subunit 29).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 29

GO: NA

KEGG:

id description
K15142 MED29; mediator of RNA polymerase II transcription subunit 29

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013539 True 1141 mRNA 0.40 3 35138349 35141343

Neighbor

gene id symbol gene type direction distance location
AMCG00013540 gmfg,LOC105934520,LOC107090391,LOC103032687,LOC106520392 coding upstream 9287 35118409 ~ 35129062 (+)
AMCG00013533 NA coding upstream 1054232 34081183 ~ 34084117 (+)
AMCG00013532 zgc:172282,LOC107697541,LOC107758157,LOC107678250,LOC107555640,LOC107749639 coding upstream 1079354 34057613 ~ 34058995 (+)
AMCG00013530 NA coding upstream 1444452 33670735 ~ 33693897 (+)
AMCG00013526 NA coding upstream 1469056 33664077 ~ 33669293 (+)
AMCG00013543 NA coding downstream 73291 35214634 ~ 35217638 (+)
AMCG00013546 NA coding downstream 166021 35307364 ~ 35309555 (+)
AMCG00013545 NA coding downstream 184648 35325991 ~ 35331505 (+)
AMCG00013549 LOC101074320 coding downstream 665458 35806801 ~ 35814022 (+)
AMCG00013552 NA coding downstream 724442 35865785 ~ 35869903 (+)
G45124 NA non-coding upstream 18005 35120079 ~ 35120344 (+)
G45108 NA non-coding upstream 80392 35050857 ~ 35057957 (+)
G45100 NA non-coding upstream 204562 34933206 ~ 34933787 (+)
G44983 NA non-coding upstream 1605194 33532772 ~ 33533155 (+)
G44954 NA non-coding upstream 1697185 33439835 ~ 33441164 (+)
G45129 LOC105030512,LOC106584099,LOC106569888,LOC106613431,LOC106573797,LOC106609167 non-coding downstream 79 35141422 ~ 35142529 (+)
G45135 NA non-coding downstream 33892 35175235 ~ 35175446 (+)
G45150 NA non-coding downstream 85485 35226828 ~ 35227029 (+)
G45162 NA non-coding downstream 138562 35279905 ~ 35280457 (+)
G45170 NA non-coding downstream 158529 35299872 ~ 35302781 (+)
G45072 NA other upstream 1023410 34114673 ~ 34114939 (+)
G45029 NA other upstream 1438804 33695592 ~ 33699545 (+)
AMCG00013516 NA other upstream 1689256 33442394 ~ 33449093 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other upstream 1725508 33376520 ~ 33412841 (+)
G44870 NA other upstream 2031754 33106292 ~ 33106595 (+)
G45174 NA other downstream 193547 35334890 ~ 35338052 (+)
G45209 LOC107575789 other downstream 513959 35655302 ~ 35659833 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other downstream 919412 36060755 ~ 36085843 (+)
AMCG00013566 NA other downstream 1196919 36338262 ~ 36370087 (+)
G45338 NA other downstream 1262011 36403354 ~ 36403901 (+)

Expression


Co-expression Network