AMCG00013543


Basic Information

Item Value
gene id AMCG00013543
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 35214634 ~ 35217638 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013543
CGCCGAGCTCCGCGCACACAGCCCGCCGTCCGCCAGTTAACCATGTCCGAAAGATTCAACCAAGAAGCACTGATGAATCTGATCAATTTGAGCTTTGATGACGCCTACAACCAGCCGCAGATTCAGCCTCATCGCAACCGGTCCTCCGTGGCCCTGTCCCAGGAGCGGGTCAACGAGCAGGCCTGGTCGTGCGAGAGCAGCCCCTGGAGTACCGCCGCCCCCAGCAGAAACGTCCACGCTTTCCGCTCCGACCGCTCCATGAGCCTAACCGAGAGCAGCAGCGCGGGCTTCGGCAAGACGAAGCCCGGCGAGGTGCCCCCTCCTCCCGGGTTCCCCCCCCTCAACCCCTCGCCGACGTTGACCAGCCGCTACAAGACGGAGCTGTGCCGCAGCTTCGAGGAGAGCGGCAGCTGCAAGTACGGGAACAAGTGCCAGTTCGCCCACGGGGAGGCCGAGCTGCGGGGCGTCAACCGCCACCCCAAGTACAAAACCGAGGCGTGCCGCACTTTCTACAACTTCGGCTACTGCCCCTACGGATCCCGCTGCCACTTCATCCACGAAGACAAAGTCTCCTCCACCGGCGCCCTGCCGCAGCCCCACTCCGCCGGCCAGCCGTCGCAGCGCCAGTTCCACAAGAGCGTCAGCTTCGCCGGCTTCCTGGGGCCCCGGAGCTCCCCGCCCCCGAGCCTGCACGACCCCCTGGGCTTCACCCGGGCGCCCTCCGTGTCCCCGCCGCCAGCCGAGCTCCTGTCCCCGGTGTTCAGCGAGGCGGGCGCCCAGCAGAAAAACAACGCCTTCCTGTTCTGCCAGAGCCGCGCCAGCCTCGGGGACATCCACAGCATACCTCACATCATGGAGCCCAGCAAGCCCTCCTGTTGCGTGTGTGGCCACGGCGGCAGATTCCCGTCCGCCCTGAGCAAAAGCACGGGCAAAGAGGCGCAGAGCAACTCCTACCACCCCCCGGCCAACCTGCAGCGCTTCTCCTCCGAGGACTCGCTCTCCGACCGGGACAGCTACAGCTCCGGCAGCCTGAGTGGCTGCGAGTCGCCCACTTTCGACAGTATTGGATCCAAGCGGCTCACGGTGTTCGCTCGGATGTCGCTTTCTGATTAACCGCCGCACAAGAGACCCTGCAGCTGAAATCAATGAGGATATGACGCGCATaaacactttatatatttatagtagtAATTGCTCGAGTTGAAATTGTTTTTGGTACACATTCTTAATACAATCCAAAGCTCtatttttataatgatataCTATAGCTGATATTTTCTACCAATCTTGTCTTCCATTGAAATGCATATCCATTGTTTAAAACCAGTACGATGAGCTTTCAAAGTAATTTTGTTACTGACCAGAAAGCTGTCTTTGTATTCAGATTTGTAACTCCGGAAATacctctatttttttttcatttgcttattttaacttccaaatcaaaaagaaaatatgtaccTTTTGTAAATgacttttgtaaaaacaaaataataataacaatgtggagaaaatgtcagtattttaaagacattaaaccattaatgtgacaaacttgaaaacaaaaaccaaacccACTATATTCTGCACTTTAAAATTCATACTGGGAGAGGAATCTCTGCATGTAGCATTTTAACAAAGCTTTATACTCTTTACTTAATAATAGGCAATGTATTGTACATCATATGTTTAAGTTGTGAGTTGTGTGAGTAtttaagtgtttgtgtgtgtatatatatgtatctgcaCACACAAGAACAAGGCCAACagttagttaaaaataaatgttatttataatcttCTGATAATAGATCTGGAaaagaaatatgtatgtattttgcaatGCGGCTATGTTAGCAGGTGGTTTTTAAGGATGACAATGTGTGCCCTTTTTTCTGCCTGAAATCATTTCATGGTCAATATGAAGAAATGCAATGACCCAGAAGGTCTAATTACAGACCTTTTAGTTTGTCATTTTGTGCTGCAAGTTTGCATTGCATAACATTGTGACAGCCCTGCATAATACATTGACTGGGATGACTTGCTTATTGTCAGGGAACATAGATATGAACAATACAGTACttccatattttgttaatgtttgtttatgtatttttaaagactgctaacatatatttattgtacttatttattgaagtaattttttttacttatttatcgaatataaaacaaatgtttatttggtttcacTAAATGTTGctactgaaaaatgtttttccacaaatacagaaataaaaaaggataagAAACCATGTGTGAGCTTGatgtcatgattttttttttttttctaatcttaCAGTGATCAAGTAGGGGGGGTTGGGTCAATATATGTCCGTGGTTTATGTATAGTAGAAAGACCGGGGTGAATTTAGATGTGTGGATTTAGAGAATTAACGAGGAAGTCCTGTTAACCATTGCTGAAAGAGGTGGTCCTAATCAATCATTTTGATTTTCACCAGATGTTCACttgtacattaatacattaatgatagaattacttaataaaatatataactataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013543 True 2542 mRNA 0.46 2 35214634 35217638

Neighbor

gene id symbol gene type direction distance location
AMCG00013539 med29 coding upstream 73291 35138349 ~ 35141343 (+)
AMCG00013540 gmfg,LOC105934520,LOC107090391,LOC103032687,LOC106520392 coding upstream 85572 35118409 ~ 35129062 (+)
AMCG00013533 NA coding upstream 1130517 34081183 ~ 34084117 (+)
AMCG00013532 zgc:172282,LOC107697541,LOC107758157,LOC107678250,LOC107555640,LOC107749639 coding upstream 1155639 34057613 ~ 34058995 (+)
AMCG00013530 NA coding upstream 1520737 33670735 ~ 33693897 (+)
AMCG00013546 NA coding downstream 89726 35307364 ~ 35309555 (+)
AMCG00013545 NA coding downstream 108353 35325991 ~ 35331505 (+)
AMCG00013549 LOC101074320 coding downstream 589163 35806801 ~ 35814022 (+)
AMCG00013552 NA coding downstream 648147 35865785 ~ 35869903 (+)
AMCG00013556 NA coding downstream 681453 35899091 ~ 35908745 (+)
G45135 NA non-coding upstream 39188 35175235 ~ 35175446 (+)
G45129 LOC105030512,LOC106584099,LOC106569888,LOC106613431,LOC106573797,LOC106609167 non-coding upstream 72105 35141422 ~ 35142529 (+)
G45124 NA non-coding upstream 94290 35120079 ~ 35120344 (+)
G45108 NA non-coding upstream 156677 35050857 ~ 35057957 (+)
G45100 NA non-coding upstream 280847 34933206 ~ 34933787 (+)
G45150 NA non-coding downstream 9190 35226828 ~ 35227029 (+)
G45162 NA non-coding downstream 62267 35279905 ~ 35280457 (+)
G45170 NA non-coding downstream 82234 35299872 ~ 35302781 (+)
G45207 NA non-coding downstream 333341 35550979 ~ 35551223 (+)
G45226 NA non-coding downstream 740469 35958107 ~ 35959584 (+)
G45072 NA other upstream 1099695 34114673 ~ 34114939 (+)
G45029 NA other upstream 1515089 33695592 ~ 33699545 (+)
AMCG00013516 NA other upstream 1765541 33442394 ~ 33449093 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other upstream 1801793 33376520 ~ 33412841 (+)
G44870 NA other upstream 2108039 33106292 ~ 33106595 (+)
G45174 NA other downstream 117252 35334890 ~ 35338052 (+)
G45209 LOC107575789 other downstream 437664 35655302 ~ 35659833 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other downstream 843117 36060755 ~ 36085843 (+)
AMCG00013566 NA other downstream 1120624 36338262 ~ 36370087 (+)
G45338 NA other downstream 1185716 36403354 ~ 36403901 (+)

Expression


Co-expression Network