AMCG00013546


Basic Information

Item Value
gene id AMCG00013546
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 35307364 ~ 35309555 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013546
GACTCTGGCTGCTGCGATTATGCTCTCTCAGTCGTAGGTCGCCTGAGGAAGACGGAAGAAACGCCCATCAGCACAGTGTTAGGTGACATCAATATAAGCGAGGCATCAGAGACGGATTCGGACGAAGAGGTTTACATTACCTCCATCCCTTCGTCTTGCACAGCGGTGGTCGGAGTCAGGGTGCCCGGCGAAGCCTCggagacagacagtgagggTGAGGATGAAAGCAGGACGAAACCAGATGAGGGACAAGAGGCTTCGCCTGCAGTCTATCACAAGGATCTGCCCCCGTTGATAGTGATCAGAAACACCACTGACTTCATCTCAGCTGCAGAGGAGAAGCCAGTCTTAAAGCTGGAGCAGGGCGGGCGCTACAGCACTTTGTTGCAGCAGAAACTCCAGGAGAGCAATTTGCGTCTCTGCTGCGACGTGACCCAGACAGTCAGACAGGTGTACCAGAACGCCACCAAGGAGATCCGCATGGCCACCTCGCACCTCAACAACTCGCAGAACGGGATCATCAATGCCTCGCACAGCATCCGCCTCATCCTGGAAGACCTGAAGTCGGTGTCGGAAAAAATCGACATCATCACAAGTTGTAACCTTCTGCCAGACATTAAAATAGACACCCCT

Function

GO: NA

KEGG:

id description
K20186 BLOC1S3; biogenesis of lysosome-related organelles complex 1 subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013546 True 633 mRNA 0.54 3 35307364 35309555

Neighbor

gene id symbol gene type direction distance location
AMCG00013543 NA coding upstream 89726 35214634 ~ 35217638 (+)
AMCG00013539 med29 coding upstream 166021 35138349 ~ 35141343 (+)
AMCG00013540 gmfg,LOC105934520,LOC107090391,LOC103032687,LOC106520392 coding upstream 178302 35118409 ~ 35129062 (+)
AMCG00013533 NA coding upstream 1223247 34081183 ~ 34084117 (+)
AMCG00013532 zgc:172282,LOC107697541,LOC107758157,LOC107678250,LOC107555640,LOC107749639 coding upstream 1248369 34057613 ~ 34058995 (+)
AMCG00013545 NA coding downstream 16436 35325991 ~ 35331505 (+)
AMCG00013549 LOC101074320 coding downstream 497246 35806801 ~ 35814022 (+)
AMCG00013552 NA coding downstream 556230 35865785 ~ 35869903 (+)
AMCG00013556 NA coding downstream 589536 35899091 ~ 35908745 (+)
AMCG00013558 sptbn4,LOC106612708 coding downstream 787600 36097155 ~ 36111063 (+)
G45170 NA non-coding upstream 4583 35299872 ~ 35302781 (+)
G45162 NA non-coding upstream 26907 35279905 ~ 35280457 (+)
G45150 NA non-coding upstream 80335 35226828 ~ 35227029 (+)
G45135 NA non-coding upstream 131918 35175235 ~ 35175446 (+)
G45129 LOC105030512,LOC106584099,LOC106569888,LOC106613431,LOC106573797,LOC106609167 non-coding upstream 164835 35141422 ~ 35142529 (+)
G45207 NA non-coding downstream 241424 35550979 ~ 35551223 (+)
G45226 NA non-coding downstream 648552 35958107 ~ 35959584 (+)
G45227 NA non-coding downstream 658561 35968116 ~ 35968417 (+)
G45228 NA non-coding downstream 659114 35968669 ~ 35970696 (+)
G45229 NA non-coding downstream 663923 35973478 ~ 35973877 (+)
G45072 NA other upstream 1192425 34114673 ~ 34114939 (+)
G45029 NA other upstream 1607819 33695592 ~ 33699545 (+)
AMCG00013516 NA other upstream 1858271 33442394 ~ 33449093 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other upstream 1894523 33376520 ~ 33412841 (+)
G44870 NA other upstream 2200769 33106292 ~ 33106595 (+)
G45174 NA other downstream 25335 35334890 ~ 35338052 (+)
G45209 LOC107575789 other downstream 345747 35655302 ~ 35659833 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other downstream 751200 36060755 ~ 36085843 (+)
AMCG00013566 NA other downstream 1028707 36338262 ~ 36370087 (+)
G45338 NA other downstream 1093799 36403354 ~ 36403901 (+)

Expression


Co-expression Network