AMCG00013558 (sptbn4,LOC106612708)


Basic Information

Item Value
gene id AMCG00013558
gene name sptbn4,LOC106612708
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36097155 ~ 36111063 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013558
GAGGGTCAGCAACTGATACAGGAGAAACCAGAGTTGGGCTCCATTGTGAGGCGGAAGCTGGAGGAGATCCGAGAGTGTTGGTTGGAGCTGGAGAGCACCACGCAGGCCAAAGCTCGGCAACTCTTTGAGTCCAATAAGGCTGAGTTGTTGGTCCAGAGTTACAGCAGCTTGGATCAACAGCTGTCTCAGCTGGAGGGCCACCTATCCCATGTGGATCAAGGCAGAGATCTAACCAGCGTTAACAAACAACTCAAGAAGCTCCAGAGTATGGAGAGTCAAATGGAGGAGTGGTACAAGGAAGTGGGGGACTTGCAGGTACAAGCAGCCTCCATCCCCCAGCAGGGTGTGATCAGGGAAAGTGTGACTGATAAGCAGAACATGGTGGAGACACGGATTGTGCGCCTCATCGAACCTCTAAAAGAGAGGCGACGCATCCTGCTGGCATCTAAGGAGGTGCATCAAGTCAGCCGAGACCTGGAGGATGAAATTATCTGGGTTCAAGAGAGACTCCCAATGGCCACTTCTAAAGAACATGGAAGCAGCCTTCAAGCAGTGCAACAACTCATGAAGAAGAACCAGGCAACTTGTTTCTCTTCCTGTGGTATTCTCAGAGTCTACAGCGGTCATCGGGCACGAATGGAGGACGTGTTGGACCGAGCGGGCCTCATTGCCTCCATCCGTAGCCCAGAGGCCGATTGTGTCCGGGCCAGCCTGGACCATCTACGGCACCTGTGGGAGACTCTGCGATTGGAGACCGAGCGGCGTCAGCTCACCCTGGATGCCATGTACCAGGCCCAGCAATACTACTTTGATGTGGCTGAGGTGGAGGCCTGGCTCAGCGAGCAGGAGCTTCACATGATGAATGAAGAGAAAGGCAAGGATGAAGCCAACACCCTCCAGCTACTCAAGAAGCACCTGATAGTGGAACAGACCATCGAGGACTACGCTGAGACCATAGGCCTCCTGTCCCAGCAGTGTCGGCAGCTGCTAGAGCTTGGCCATCCAGACagCGAGCAGATCAGCAAAAGGCAGTCCCAGATCGACCGGCTCTACGTGTCTCTGAAGGACCTGGTGGAGGAACGCAAGTCCAAGCTCGAGCAGCAGTACTGGCTGTACCAGCTCAACCGGGAAGTGGACGAGTTGGAGCAGTGGATCGCTGAGAGGGAGGTGATCCTGCAGGAGAAGTTCACAGAGTTTGCGTCAGAGACTGGAAACATGGGGCAGGAGCGAGTGACTGCCGTCAACCAGATGGTGGATGAGCTGATAGACTATGGCCATGCTGACGCGGCCACCATCGCGGAGTGGAAGGACGGGGTGAACGAGGCTTGGGCTGACCTGCTGGAGCTTATGGAGACACGGGCCCAAATGCTGGCTGCCTCACACCAGTTGCACAAGTTCTTTGCTGACTGCCGCGAGGTGCTGGCACAGATTGAGGACAAGCAGAAGCGACTGCCAGAAGTGAGGGCGCGCCAAGGGGGCACTTCCAACACCAGTACCCTGCAGAGACTCATGCACACCTTCGAGCATGACATCCAGCTGCTTGTCACCCAGGTGAGACAATTGCAGGAAAGTGCGGCCCAACTCAGGACAGTCTATGCCGGGGAGAAGGCAGAGGCCATTGCTGGGAAAGAGCAGGAAGTGATGCAGGCCTGGAAGGAACTATTGAATTCCTGTGAAGAGTGCCGGGTGCAGATCACCACAGCGACGGACAAGCTGCGTTTCTTTGGCATGGTGAGAGACCTGGTCCTCTGGATGGACAGCATCATCTGCCAGATAGGAACCAGGGACAAACCCAGAGACGTGTCCTCAGTGGAAGTGATGATGAACTACCACCAGAGCCTGAAGAGTGAGATTGAAGCACGCAATAAGAGCCTGATGCAGTGCATGGAAATGGGCAAGACCTTGTTGGCGGCCAGAAATCCTGCAGCGGAAGAGATCAAGGAAAAGTTGGACAAACTGATCTCTAAGCAAAAAGAACTCTCTGAGAAATGGGATAAACAATGGGAAGTCCTACAACACATGTTGGAGGTGAACCAGTTTGCCCAGGAGGCTGTAGTGGCAGAGGCTTGGCTGACAGCCCAGGAGCCCTTCATCAGTAGCCAGGAATTAGGTAGCAGTGTGGATGAAGTGGAGCAGCTGATTCGGCGGCACGAGGCCTTCCGCAAGGCGGCCGCCACCTGGGAAGAGCGCTTCAGCTCCCTGCGCAGACTCACCACGGTGGAGAAGTTGAAAGCGGAGCAGAGCAAGCTGCCCCCCACACCTCTGTTGGGACGCAAGGTGTTTTTGGATCCCCAGGAAGCCTCACCTGCTCGGAGTACTACCTCTTCACTGCTGCGGCAGACCATCTACGAGCAGATCGAGCCCAAATCCGAGCGGCCTCTGGAAGCCACTTCTTCGGTGGCCCGGAGGCTTGGCTCCACAGTGGCCTCCTACACGCCAGTCATGAACGGGATGAAATACGGTGGACTGGACTTCCGGGCAGAGCCCAAAGTGGCTTATGTCCGGCAGGAGCTGAAGCCAGAGCGTCTGCAGCCCAGGATCGATCTCCTCCAGGACGGGGGGAGGCCCATGCTGGAAGCCAGGcaacctgagagagaggagattaCCCCAGCTGAGGTGACACGAGAGCCAGTCCGGGAAATAACCAACGGGCCCCAGGAGCAGAAAGGGGACCCCCGGGGGAGCCGCTCTGACCCCCAGGTGGACCACTACTATAGGCGCGAGCGCAGGCTGGACCGTCAGACCTCCAGTGAACAGGAGATCCAGGCCAGAAGGGATGAGCTGCCCCAGGAGGTCCGCAGGGAGCGCTACGAGCGGCGGCTGGAGAGACAGACCTCAAGCGAACAGGAGGCCCAGGCTCGACGGGAGGAGTTGCCTCAGGAACGCAGGAGGGATCGGCATAGGCTGGAGAGGCAGGAGTCCAGCGAGCAGGAGACCACACGGGAGCACTCTGATAAGCGCTCTGGAGGGGAGAAGCGATCCACGCTGGCAGATATTGTCGAGCAGCttcaggagagggaggccgcccaagCCCAGGTCCGTGAGAGAGAAGGAACCCCACGTCTGCCCAATGGTCTGCCTGAACGAACCACCAGACCAGACAGGCCACGAGCCCGGGACCGCCCCAAACCCAGGAGGAGACCGCGGCCCAAAGAGCCCAACACCCTTCCTGGTGAGGCCCGGCGATCGCGCTCTGCCCCAGCTCAGAGCGGCTCCATCCCGTCTGTCCCCCAGCCGCCCACCCACACCATTCAACATGAGGGCTTCCTCTTCCGTAAGCATGACGTCGAGAGTCAGAAGAAGGCCTCAAACAGGTCGTGGGTGAACCTATACTGTGTGCTAAACAAAGGGGAGATTGGTTTCTACAAAGATGCGAAGAACACCTCCACACCTTACAATAGTGAGCCCTTGCTCAGCCTAGAGAACTGTACTTGCGATGACACCAATGGatacaagaagaagaaaaacgtCTTCAAACTCAAACTTCTCACTGTATCTGACTTGCAGGAGGATTTGAAGGGCTGGACATCGAACATAACGAATAGCATAGCAGAGCACGAGGAGATAGCTAAATGGGGGCAGCCAACCCAGCCAACTACCTCTTCCACAGACGAGGGCACAAGGAGGGATGGAgacaaagtagaaaaaatagaaaaagtagaaaaagctgaaaaaggagaaaaagcagaaaaatctgaaaaatctgaaaaaggagaaaaaggagACAGACGCTCCAGTGTCTCGGGGAAGAAGAAATGA

Function

symbol description
sptbn4 Enables ankyrin binding activity and phosphatase binding activity. Predicted to be involved in several processes, including adult walking behavior; neuron development; and regulation of heart contraction. Predicted to act upstream of or within several processes, including adult behavior; fertilization; and regulation of growth. Located in cytoplasm; membrane; and nuclear lumen. Part of spectrin.

NR:

description
PREDICTED: spectrin beta chain, non-erythrocytic 4 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013558 True 3759 mRNA 0.56 18 36097155 36111063

Neighbor

gene id symbol gene type direction distance location
AMCG00013556 NA coding upstream 188410 35899091 ~ 35908745 (+)
AMCG00013552 NA coding upstream 227252 35865785 ~ 35869903 (+)
AMCG00013549 LOC101074320 coding upstream 283133 35806801 ~ 35814022 (+)
AMCG00013545 NA coding upstream 765650 35325991 ~ 35331505 (+)
AMCG00013546 NA coding upstream 787600 35307364 ~ 35309555 (+)
AMCG00013559 shkbp1,LOC106612709 coding downstream 8503 36119566 ~ 36132259 (+)
AMCG00013564 LOC106612713,LOC106580732,LOC105023074,LOC108435511 coding downstream 269906 36380969 ~ 36403018 (+)
AMCG00013568 NA coding downstream 323823 36434886 ~ 36444730 (+)
AMCG00013567 NA coding downstream 351789 36462852 ~ 36476392 (+)
AMCG00013573 LOC107548551 coding downstream 581089 36692152 ~ 36693141 (+)
G45230 NA non-coding upstream 112722 35974238 ~ 35984433 (+)
G45229 NA non-coding upstream 123278 35973478 ~ 35973877 (+)
G45228 NA non-coding upstream 126459 35968669 ~ 35970696 (+)
G45227 NA non-coding upstream 128738 35968116 ~ 35968417 (+)
G45226 NA non-coding upstream 137571 35958107 ~ 35959584 (+)
G45276 NA non-coding downstream 2992 36114055 ~ 36117331 (+)
G45301 NA non-coding downstream 49071 36160134 ~ 36187942 (+)
G45343 NA non-coding downstream 294980 36406043 ~ 36408735 (+)
G45373 NA non-coding downstream 502672 36613735 ~ 36613942 (+)
G45395 NA non-coding downstream 587735 36698798 ~ 36700063 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other upstream 11312 36060755 ~ 36085843 (+)
G45209 LOC107575789 other upstream 437322 35655302 ~ 35659833 (+)
G45174 NA other upstream 759103 35334890 ~ 35338052 (+)
G45072 NA other upstream 1982216 34114673 ~ 34114939 (+)
G45029 NA other upstream 2397610 33695592 ~ 33699545 (+)
AMCG00013566 NA other downstream 227199 36338262 ~ 36370087 (+)
G45338 NA other downstream 292291 36403354 ~ 36403901 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other downstream 509339 36620402 ~ 36646066 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other downstream 625614 36736677 ~ 36738479 (+)
G45439 NA other downstream 763844 36874907 ~ 36877603 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013629 sptbn4b coding NC_007129.7 CM002902.2 46056907 ~ 46063773 (-)