AMCG00013560 (sptbn4,LOC107602096,LOC103155361)



Basic Information


Item Value
gene id AMCG00013560
gene name sptbn4,LOC107602096,LOC103155361
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36060755 ~ 36085843 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00013560
GGTCACAGGGTTTAGCCGTCATGGCCAATGCCTCGACAGACCTGGATAATGCAGAGGCCCAGCGGCAGCTCAATAACAACAACCGGCCGGCTAGCACCACCGAACAAGCATGGGACATGGAAAGCACCACCGCCAAGCTCTTCGAGTGCTCCCGGATCAAAGCGCTCGCAGATGAGCGGGATGCTGTTCAGAAGAAGACTTTCACCAAATGGGTGAACTCTCACCTGGCCCGAGTTTCCTGTCGCATTGCAGATCTCTACAATGACCTCCGGGATGGCTACATGCTTACCAGACTGCTGGAAGTGCTGTCGGGAGAGCTGCTGCCCAAGCCCACCAGAGGCCGAATGCGCATCCACTGTCTGGAGAACGTTGACAAGGCTCTCCAGTTCCTGAAGGAGCAGAGGGTACATCTAGAGAATGTGGGCTCCCATGACATCGTGGACGGCAACCATCGCCTCACCCTCGGTCTCATCTGGACCATCATTCTGCGCTTCCAGATACAGGTGATTAAGATTGAGACCGAGGACAACCGAGAGACCCGCTCGGCAAAAGATGCTCTTCTCCTGTGGTGCCAGATGAAAACTGCAGGATACCCTGAAGTGAACATCCAAAACTTCACCTCTTGCTGGAGAGACGGATTGGCTTTCAATGCGCTCATTCACAGACACAGGCCTGACTTGATTGAATTTAACAAGCTGACCAAATCGAATGCCACATACAATCTACAGCAAGCCTTTAACACTGCAGAGCAACACTTAGGACTCACCAAGCTCCTAGATCCTGAAGATGTGAACACGGAGAACCCAGATGAAAAGTCTATCATCACCTATGTAGTGTCCTTTTACCATTACTTCTCCAAAATGAAAGCACTGGCTGTGGAAGGAAAGAGGGTTGGGAAGGTGTTGGACAATGCCATCGAGACGGAGAAGATTATTGAGCGCTACGAAGCCCTGGCCTCGGAGCTGCTGGAATGGATTGAAAAGACCATTGGGATCATCAGCAATCAGAAGTTTGCCAACTCTCTGACGGGCGTCCAGCAACAGCTACAGGCCTTCACCACCTACTGCACCATTGAGAAACCTGTCAAATTCCAGGAAAAGGGCAACTTGGAGGTCCTCCTCTTCACAATCCAAAGCAAACTAAGAGCCAACAACCAGAAACCATATGTGCCTAATGAGGGGAAATTGATCTCTGACATCAACAAGGCTTGGGAGAGGCTGGAGAAGGCGGAGCATGAGAGGGGCGTGGCTTTGCGGACAGAGCTGATTCGTCAGGAGAAGCTGGAACTCTTAGCCCAACGTTTTGACCACAAAACCACCATGAGAGAAGCCTGGCTGAATGAAAACCAGAGACTTGTTTCACAGGATAACTTTGGCTATGATCTGCCAGCGGTGGAGGCAGCCATGAAGAAGCACGAAGCCATTGAGGCGGACATTTCTTCCTACGAGGAGAGGATTGGAGTGGTGGTGGAGTTGGCCAGCGAGATGGAGGAGGAAAATTACTATGACATCCGAAGGATCACAGCCAGGAAGGAGAATATCTTGCGGCAGTGGGGCCTACTGAAGGAGCTGGTGATCGGGCGGAGGACACGGCTGGAGACGAACCTCACGCTGCAAAAGACCTTCCAGGAGATGGTATACATGATCGACTGGATGGAGGACATGCAGGTTCAGCTGCTGTCTAAGGATTTTGGTAAGCACTTGCTGGAAGTGGACGATCTTCTTCAGAAACATGGCCTTCAAGAGGCAGACATCGCTGTCCAAGCTGAGAGAGTCCAGACACTCAATGCTTCTGCCCTGAGGTTCACCAACATTGAAGGCTACCAACCCTGTGACCCACAAGTGATCTGCAACAGGGTCAACCATGTCAGCACCTGCCTGGAGGAACTCAAGCAGCTGGCGGGCAAGCGACGCACCGAGCTGGAGGAGTCGCGGCAGCTTTGGGCCTTCTTccaggaggtggaggaggccGAAGCCTGGATCCGGGAGAAAATCTCCATCCTCGCGGCACAGAGCTTTGGAAAGGACCTGAGCAGTGTGCTGGGCCTGCTCAACAAGCACAAGATCCTGGCCGGGGAACTGCTGGGGCGCCGCTCGCTGCTGCAGCAGACCATGAAGAAAGGGAAGCAGATCCTGACACAGAAGTGCTTTGGGACGGGGCGCATTCAGGAGAAGATCATGGAGGTCAAGTCTCAGTGGAAGAAGCTGGAGGACCAAGCCCGGCAGAGGCTCAACAATCTGCAGGAGGCCCTCAACTATTTCCAGTTCAACGCAGAGACGGATGACCTTCTTGTCTGGCTGCAGGACATCTACCGCCTGGTCTCCAGCGAGGATTTTGGCCACGACGAGTACTCCACCCAGTCACTGCTGAAGAAGCACAAGGGAGTGCGGGAGGGCATTGAGAAGCACCGGCTACACGTGGTGGCTCTTCGGAAACACATGGTGAGCTTGACACTGCAGTACCGCGAGCTGGATGAGGTGCAGGCCCGGATGGCTGAAGTGGAACAGCTCTACACCGAGGTGGCTGAGGTCTCGGTTCTCAGGCAGCAGTGGCTCCACGATGCTCTGGCTGTGTACCGCATGTTCAGCGAGGTGAATGCCTGCGAGGTGTGGATCGACGAGAAGGAGCAGTGGCTGAACAAGATGGAGATCCCTGAGAGGCTGGAGGATGTGGAGTTAATTCGGTGCTTTCCTCTTTACAGGTTTGAAAGCCTGGATCAGGAGATGAATAGCCTGATGGGACGAATTCTGGATGTCAATCAGATTGTCCAACAGCTGCTGGACAGCGGTCACCCCAGCTCAGCGGAGGTGCGTGGCTGTCAGGATCATCTCAACGGCAGGTGGAATCGCATTGTGGAACTGGTGGAGCAGAAGAAGGACCATCTCAACTCCATCCTACGCATCCAAAACTACCTACTGGAGTGCACTGAGATCAAATCCCAAATCCGGGAGAAGAGGAAAGCTATAGAGACCACCCAGTACACTGGCAGTGACTTGGGAGGGGTGCTGGCACTCCAGAGGAAGCTCTCCACCATGGAGGGGGCACTGGCCATCCTGGAGCCCAAGCTGATCCAGCTGCAACAGGATGCAGAGGAGCTAGCGGCCACCCACCCATCCCAGGCCATGGAGATCCTGGTCCACTTTGAGGAGATCAGTGTAGAGTGGGAGGAACTGAAGAGGACACTGCAGGGCTGTGAGGACTCCCTGACCGTGGCCAGCCGGCTGCAGCAGTTCATCCAGGACTTGGACAACTTCCTGACCTGGCTCGTCCAGACACAGACGGCAGTGGCTTCCGAAGACCTGCCCAACACCCTGGAAGAGGCTGAGGTCCTCATCAACCAGCACGCCACCCTCAAGGAGGAGATCGGTCGCTACGAAGAGGACTACAACCGCATTCAGTCGGTCAACAAACTCCTGGCCTTGGAGGAGGCCCAGCTGCCTTACATTTCCCTCCAGCAGTGGCTGCAGAAGCTGGACGTGGGCTGGAACAAGCTGCTGGAGATGTGGGAGAGCCGGCGAGAGGTCCTGGTCCAGTCCCACATCTTCCACCTCTTCCTCCGAGATGTCAAGCAAGCCGAGTCCTTCCTGAACAACCAGGAGTCAGCTCTGGCTCATGTGGAGCTGCCTACCACAGTGGAAACTGTAGAAGCTGCCATCAAAAAGCATAAAGACTTCACCACCACCATGGAGCTAAACCTACAGAGGATCAAGGCCGTGATCGAGGCTGGGGAGAGTCTCATCAGTCAGGGCAACATCTACTCTGAGCGCATCAGGGAGAGGATAGAGACCATTGCCAACAGGAGCAAGCACAACCGAGAACTCGCTCAGGAGTGGCTGAACAAGCTCAGTGACCAGTGGGAGCTCCAGAGATTTTTGCAGGACTGCCATGAGTTGGACGACTGGGTGGGTGAGAAGATGTTGATGGCTCGCGACACCTCTCGGGACGAGGCCCAGAAGCTGCACAAGAAATGGCTGAAGCACCAGGCCTTCATGGCTGAGCTGGCCCAAAATAAAGAGTGGCTGGAGAAGATCGAG
>TU56416
agGCCTGACTTGATTGAATTTAACAAGCTGACCAAATCGAATGCCACATACAATCTACAGCAAGCCTTTAACACTGCAGAGCAACACTTAGGACTCACCAAGCTCCTAGATCCTGAAGATGTGAACACGGAGAACCCAGATGAAAAGTCTATCATCACCTATGTAGTGTCCTTTTACCATTACTTCTCCAAAATGAAAGCACTGGCTGTGGAAGGAAAGAGGGTTGGGAAGGTGTTGGACAATGCCATCGAGACGGAGAAGATTATTGAGCGCTACGAAG

Function


symbol description
sptbn4 Enables ankyrin binding activity and phosphatase binding activity. Predicted to be involved in several processes, including adult walking behavior; neuron development; and regulation of heart contraction. Predicted to act upstream of or within several processes, including adult behavior; fertilization; and regulation of growth. Located in cytoplasm; membrane; and nuclear lumen. Part of spectrin.

NR:

description
PREDICTED: spectrin beta chain, non-erythrocytic 4 isoform X4

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00013560 True 4034 mRNA 0.55 18 36060755 36085843
TU56416 False 280 lncRNA 0.45 3 36064830 36065978

Neighbor


gene id symbol gene type direction distance location
AMCG00013556 NA coding upstream 152010 35899091 ~ 35908745 (+)
AMCG00013552 NA coding upstream 190852 35865785 ~ 35869903 (+)
AMCG00013549 LOC101074320 coding upstream 246733 35806801 ~ 35814022 (+)
AMCG00013545 NA coding upstream 729250 35325991 ~ 35331505 (+)
AMCG00013546 NA coding upstream 751200 35307364 ~ 35309555 (+)
AMCG00013558 sptbn4,LOC106612708 coding downstream 11312 36097155 ~ 36111063 (+)
AMCG00013559 shkbp1,LOC106612709 coding downstream 33723 36119566 ~ 36132259 (+)
AMCG00013564 LOC106612713,LOC106580732,LOC105023074,LOC108435511 coding downstream 295126 36380969 ~ 36403018 (+)
AMCG00013568 NA coding downstream 349043 36434886 ~ 36444730 (+)
AMCG00013567 NA coding downstream 377009 36462852 ~ 36476392 (+)
G45230 NA non-coding upstream 76322 35974238 ~ 35984433 (+)
G45229 NA non-coding upstream 86878 35973478 ~ 35973877 (+)
G45228 NA non-coding upstream 90059 35968669 ~ 35970696 (+)
G45227 NA non-coding upstream 92338 35968116 ~ 35968417 (+)
G45226 NA non-coding upstream 101171 35958107 ~ 35959584 (+)
G45276 NA non-coding downstream 28212 36114055 ~ 36117331 (+)
G45301 NA non-coding downstream 74291 36160134 ~ 36187942 (+)
G45343 NA non-coding downstream 320200 36406043 ~ 36408735 (+)
G45373 NA non-coding downstream 527892 36613735 ~ 36613942 (+)
G45395 NA non-coding downstream 612955 36698798 ~ 36700063 (+)
G45209 LOC107575789 other upstream 400922 35655302 ~ 35659833 (+)
G45174 NA other upstream 722703 35334890 ~ 35338052 (+)
G45072 NA other upstream 1945816 34114673 ~ 34114939 (+)
G45029 NA other upstream 2361210 33695592 ~ 33699545 (+)
AMCG00013516 NA other upstream 2611662 33442394 ~ 33449093 (+)
AMCG00013566 NA other downstream 252419 36338262 ~ 36370087 (+)
G45338 NA other downstream 317511 36403354 ~ 36403901 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other downstream 534559 36620402 ~ 36646066 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other downstream 650834 36736677 ~ 36738479 (+)
G45439 NA other downstream 789064 36874907 ~ 36877603 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000028_02211495_02287691 SPTBN4 coding CI01000028 null 2211495 ~ 2288048 (+)
rainbow trout (Oncorhynchus mykiss) G227438 fxyd5a non-coding NC_048567.1 CM023221.2 15004287 ~ 15022575 (-)
eurasian perch (Perca fluviatilis) G191567 sptbn1 unknown NC_053130.1 CM020927.1 2762050 ~ 2766062 (+)
tiger barb (Puntius tetrazona) LOC122332686 NA non-coding NW_025047819.1 JAEQBD010000164.1 35180 ~ 36891 (+)