AMCG00013564 (LOC106612713,LOC106580732,LOC105023074,LOC108435511)


Basic Information

Item Value
gene id AMCG00013564
gene name LOC106612713,LOC106580732,LOC105023074,LOC108435511
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36380969 ~ 36403018 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013564
acatacacacacacatgcacacacagaggcaTTCCCGCACATTTAAGCTCCGTGTCTGTGCATTGGCTAGCCTACTGACCCGAGAACACAGCTGAACTTTATTTGCAATGAGTGGGGTTAGTTTACAGACTGCCTGCCTGCTACGCTGGTTGTTGCTCCTTTGCGCCCCATGGTCTGTGGACTCCCACCCACAATGCCTGGACTTCAAACCCCCCTTCCAGCCCCCAGAGCCCCTGACTTTCTGCAAAGAGTATGCCAAGTTTGGATGCTGTGATCTGGAACAAGACCACCACATCTCCAGGAGATATTATGAGATCATGGATTATTTCGACTACTCGGGATACATCACTTGTGGAAAATACATTCACAGTATACTCTGTCAGGAATGCTCTCCTTACGCTGCCCACCTGTATGATGCCGAGGATGCCAACACCCCCATGAGGGAGCTGCCCGGACTCTGTGGGGATTACTGCACAGACTTCTGGCACCGCTGCCGCTCAACTCTCAGCCTTCTAACGGACAATGAGAATGCCATTGAGGCAGAGGTGGACCGGGACAAGTTCTGCGCTCTTCTGGAGCTCAAAGACCCGGAATACTGCTACCCTAATGTGCTGACCAATGCAGAGCTGAATGCCAACTTGGGGACGGTGCAGGCTGATCCTGAGGGTTGTCTTCAGCTCTGCCTGCAAGAGGTGTCCAATGGCCTCCGCAACCCAGTGGCTATGGTTCATGCCAACGATGGCACCCACCGCTTCTTTGTTGCTGAGCAAGTGGGCTACATCTGGGTCTACATGCCTAATGGCTCGAGGATTGAACAACCCTTCCTCAACCTCACCAAGGCAGTGTTGACCTCCCCCTGGTTGGGCGATGAGAGGGGTTTCCTGTGCTTCGCTTTCCACCCGCGCTTCCGCTCAGTGCGTAAAGTTTACGTCTATTACTCTGTGTACGCCAAGAAAGAGGAGAGGATCCGGATCAGCGAGTTCACGCTCTCTGCAAGCAACATGAACATGCTCGACCACTCTTCGGAGAGAGTTCTGTTGGAGGTGGTGGAACCAGCCTCCAATCACAATGGAGGGCAGCTTCTCTTTGGGTACGATGACTACCTCTACATCTTCATTGGCGATGGAGGGAGAGCAGGGGATCCCTTTGGGAAGTTTGGGAACTCTCAGAATAAGTCCGTTCTGCTGGGGAAGGTCTTGCGAGTCGACGTGGACAACAACGACCATGGCGCCCCTTACCGCATCCCACCGGACAACCCCTTTGTGAGAGAACCTGGGGCGCGTCCAGAAATTTACGCCTACGGAGTGAGGAACATGTGGCGATGCTCCATCGACCGTGGGGACTCTGTGACGGGAAAGGGTCAGGGCAGAATGTTCTGTGGGGACGTAGGGCAGAACAAATATGAGGAGGTGGACCTCATCGTCAAAGGTGGCAACTATGGCTGGAGGGCCAAAGAGGGCTTCTCATGCTATGATAACAAACTCTGTCACAACTCCTCACTTGATGATATCCTTCCCATTTTTGCCTACTCGCACAAACTGGGAAAATCAGTGACTGGAGGCTATATCTACAGGGGCTGCGAGATGCCCAATCTCAATGGACTTTACATCTTTGGGGATTTCATGAGTGGGCGCTTGATGTCGCTGAAAGAGAACCCAAACACTGGGAAATGGGAGTACAATGAGATCTGCATGGGAAAAGGACAGACCTGCTACTTCCCAAAGCTCATCAACACCTATTACAAGTACATCATTTCCTTTGCTGAGGACGAGGCAGGAGAACTCTACTTTCTTTCGACTGGGTCCCCAAGTGCGGCTGTGAGAGCTGGAGTTGTATACAAGATTGTTGACCCTTCAAGGAGAGCTGCTCCTGGCAAGTGTAAATTCACACCAGCCCCTGTGACTGTAAAGGGAAAAATGGTTCACTTTGTTCCTCGGGAAAaatTTGTCAATCGCATTAAAACAACCACCGTCCCTCCAAGTATCACGCCAACGCCTAAATACAGGAACACAACGTCAATCGGCAGATCAGTTACAACATCATCTTTTCCAGCGACGACCAGAATTGCCAGTAAGCCTCTCACAACGCCATTGCCTACTACACCTGCCAGAAGTACTCACAAACCTACCAACACACCACTGTATCCCACTACTGTGAGAATCACCAGGAAGATTACCACAACTACCTCTTCCCCCACAACCCTGAGATGGAGCCTGGTGACCACAGTCAGACCTAGGCCTACTACTTCCAGCCCCAGACTCAATTTCATCCCCACTCCTCCACTTCGACCGTCCGTCCGCCCGACATCTCTATCCACCCAAAAATCCAGAGTAACCCACACGCCTagcagcagacagacagagaagccTACCCAAGCTGTGACACGGCAACTTCAGACCACTGTCAGAAATCACTGTCAGTGGCTGGAGGAGGGGAAGTCAGACGCAAGTGTTTTCTTCAGGCCTCGCCAGACCACTCCAAGACCGACCTACCGGACAGTGACTTCCATGCCCACCTTTAAGACACAAAGGCCCAACTTCACTCTGCCCAAGACTGATGATAAAAGCCTAAAGGGGCATGCAGATAAATTGGACGTCATGAAAGGGAATCGggtgaacaaacaaaacaggggGAAATCAAGGGTGAAGGGCAGGAGACGAAAATTAAAGCAGGGGACTGTGCGTTTGGTGAGCCTGGGGAAACAGACAGGCCGTGGCAGAGTGGAGATCTTTGTGAAGGGGGAGTGGGGAACGGTGTGTGATGATTTCTTCAACAGCAAGGCAGCCTCTGTGGTGTGCCGGCAGCTGGGGTACCCCTTCGCCATCCGTGTAGCAAAGCGGGCGGAGATGGGCGAGGGCAGCGAGCTCAACATCCTCTTGGACGATGTCCAGTGCCAGGGTGAGGAGAAGACGCTGCTGGAGTGCAACACGGCCAAGATCGGCCAGCACAACTGCTCCCACAAGGAGGATGTGGGGGTGGTGTGCGGCTACGATGAGTATGGAGAGGACTAATGCAGAGGCCAGCAGTGGGACAGCCAGCCCTGTTCACcctttattttgtcttttcttctcAGTTCACTTTTGTGGGCTCACTGATCCACTCATATCTCTATACCTTTCTTCAATATTTTCCCAACTGTGGAATAAAATGGAAGAAGTCCTGAAACTTCAGGTAATAACATACAGACTATCATAGGCGCGGGAGAAGGTGCTGAGGGTACTGTAACACCCCCTGCTGGTGCTTAACGCAGTGACGAGGAAAGCAATATAAGATTTTCATGAATGCATTGCTGACCCTGAGATTGGCGTAATTGGTTGAAACAGCAGGGAAAAGGATGGGAAGAATAATAGTGTATCGTGATTTGTTGAGTGAAGACAATAAGTAATATTCGATTTAACAACAGACAATCAGCGCCGTGTTTGCTGTCGTGCGAGAGCAAGAGCCAAGCTAGCGCTCGCATACAGTAGCCATACTAAATGGAAAATGGGTAGCAGCAAAAATGAGACATTTTTTCTTAATAGTtctaataaaaagaaaaaaccacTACTAATTATGAGAAGAGTATCAACAGCATTGAAAAAAACCTAATATTGCAGAAGCAAGTGCTGAGCCTTTAGCAGAGAGTAGTAGCACAGGTTTAggcaagacatttttttttttttttaatgttggcgccctgcagaatgttttttaatgtgctgcTGAATCTGGTAAGATGCAAAGGGTCAAGTGTAGCCTTcctcaatacaataataatagccatcttattgttctgttttcaaaCAAGCTTTTCAGTTACATGTTTGTGTCGGTAGATGGCAAATTCGGATTGACTATAATTGAGTGCGAAAGGGAGGTGGTTGTGGGTTAGCCTGTAGTGTTGTCTATTGTGTAGGTGAAAGATACTggacagaacaaaaacaaggtGTCATGATTTATTCTGCACTCTGTGCCGAGgtgtggttttagtttattcCAAGTTGCAAACGGGCATTTTGGGTTTGTTGACTAGCTATAGCGCTCTTCTCACAGATACAtttgtgtagtagtagtaggctattcatgtgttttttttctcattgttatGTGTCCATGATTCGTGTGTGTGGCTGATGTATGTTGTGTATTATACGACTATTTATTCTTAAGCTCCTCCCtgcaaaatacagaaacaaacaaattgataaagctactaaaattttaaaatggcaatgacgTCATAATGTAACTTTCGTTAGGCAGCACCCCGTGCTCAAAACATCTTCCCGTGCCTGTGTAGACTGTGTGAAACAGGAACATACAAATGCATATGTGCTTGTATTCATGTACTTGTgtgtacacatttatatatagcctacatgaACATATGTGTTTACAAACCATGCCTGTTTAAAAATTTGAGATTCAGCTGGATCATGGTTTGTAAACACAAGGAATCTATTCCTTTCGAAGTTTCTGCTGCATTTGTATTATACTTTGTAACCACAACATGTGTAACTGACTAGTGCCTGATCTGGCTTAAGGTTGAACATGATCCAGGGTCTTCTGAATGACTTTATTTTTGCTGCTCATTTTGACATTTCAAATATGTGGTGGCTTTGCTGTCAATCGCATTATGACAACGGAATGATTTTTGAGGCATTAAACAAGCAAGTACAACTTGTTTCCTGGCTCTCAGAGCGTACGTTGGATCTACCTTAATGATAGCATTGCCCTCTGCTGGTAACTGAAATATATAACAAAGTcgcaaatatttgtttttattcacagTGAATTTCCCCTCCACTCTAAAATATGTTGGGAGATGTTTGGGTGACCCTTTTTCTTTGACTTGAAAATTCTGGTTTTGTTCATGAAGTGCACATTGCAGGAAGCATTTATGAATATCACTCTGCAGTATATTTTCAGGACATTTTTcacttaatataaattataatgtaacaATCATCTAGCTTTCACCTGGAGTGGATAAATGTgcatctttgtttaattttagtcTACTGGAAGCAAGTTTTCAAAATCCTTGTTGTgtatttgagaaaatatatattaattattgcaaaacaaaaaagaatataGTAAGAATGATAAAGAAAATGCTGGTCATTATTTAGCTTTATTGTAAAAGCCAACCTACTGTTTGCACACTGTATGC

Function

NR:

description
PREDICTED: HHIP-like protein 1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013564 True 5155 mRNA 0.46 9 36380969 36403018

Neighbor

gene id symbol gene type direction distance location
AMCG00013559 shkbp1,LOC106612709 coding upstream 248710 36119566 ~ 36132259 (+)
AMCG00013558 sptbn4,LOC106612708 coding upstream 269906 36097155 ~ 36111063 (+)
AMCG00013556 NA coding upstream 472224 35899091 ~ 35908745 (+)
AMCG00013552 NA coding upstream 511066 35865785 ~ 35869903 (+)
AMCG00013549 LOC101074320 coding upstream 566947 35806801 ~ 35814022 (+)
AMCG00013568 NA coding downstream 31868 36434886 ~ 36444730 (+)
AMCG00013567 NA coding downstream 59834 36462852 ~ 36476392 (+)
AMCG00013573 LOC107548551 coding downstream 289134 36692152 ~ 36693141 (+)
AMCG00013570 NA coding downstream 306357 36709375 ~ 36712969 (+)
AMCG00013574 irf2bp1,irf2bpl,LOC106580746,LOC108443036,LOC106612697 coding downstream 391023 36794041 ~ 36797976 (+)
G45301 NA non-coding upstream 193027 36160134 ~ 36187942 (+)
G45276 NA non-coding upstream 263638 36114055 ~ 36117331 (+)
G45230 NA non-coding upstream 396536 35974238 ~ 35984433 (+)
G45229 NA non-coding upstream 407092 35973478 ~ 35973877 (+)
G45228 NA non-coding upstream 410273 35968669 ~ 35970696 (+)
G45343 NA non-coding downstream 3025 36406043 ~ 36408735 (+)
G45373 NA non-coding downstream 210717 36613735 ~ 36613942 (+)
G45395 NA non-coding downstream 295780 36698798 ~ 36700063 (+)
G45397 NA non-coding downstream 301634 36704652 ~ 36704893 (+)
G45403 NA non-coding downstream 316634 36719652 ~ 36719989 (+)
AMCG00013566 NA other upstream 10882 36338262 ~ 36370087 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other upstream 295126 36060755 ~ 36085843 (+)
G45209 LOC107575789 other upstream 721136 35655302 ~ 35659833 (+)
G45174 NA other upstream 1042917 35334890 ~ 35338052 (+)
G45072 NA other upstream 2266030 34114673 ~ 34114939 (+)
G45338 NA other downstream 336 36403354 ~ 36403901 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other downstream 217384 36620402 ~ 36646066 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other downstream 333659 36736677 ~ 36738479 (+)
G45439 NA other downstream 471889 36874907 ~ 36877603 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other downstream 708750 37111768 ~ 37122611 (+)

Expression


Co-expression Network