AMCG00013570


Basic Information

Item Value
gene id AMCG00013570
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36709375 ~ 36712969 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013570
CGATGGTGCTGACGTCACTAGAGCTGCGACGCGTATTTCCGGCGGAAGGGGAATTTTCCGGTAGTGTAACGCACGTGTTTATTTGTGTTAGAGCGGCGTAACTATTGgcgtgtttttaaatgtgtttccatgtaaatactaatatatatctatatatttattaacgTAAGTCATGTCTGCGAGGCATAAAGATATATCATATTTGAGCAGCGAGGGAGAATCGGACTCTGACAGAGAACCGCTGCCTTCTGCACAGCCACAACAACAAACCCATGCAGCACACAGGATCACGAAATTTCAGTGTCCTGCGGATTTCATTTCTTCTCCCTACAAACCCTGTAGTGGTACGAGCTTGAAGAACTTGACCAACAGCAAAACAGAAGTATGGCTGATCAAAGCGCCAGCCAACTTCAACCCAGAGAGctttgCTGGCACCAAGATTCCCCTGATTGGCACTGAGACATTGAAACCGAAGAGCAGCGGTGGCACCCAGCAGGTGTACAACATCTTTAGCACCCCAAAAGAACAAAGGGATATGTGCTTGTTGACATCAAGTGGAGATTCAGGCAAGATTCTGTGCACCCCGGGGTTTGCAGGCATCATCAACATCTGTGAGACTTTTGGCGACTGTAACGCCAACCAGGCCCCCAAAGCTATACCAGCAAGCCCCCCTCCTCGAATCCCAGAAGGGCTGAAGCAGAGATTCCAACCGTTTGGCAGCGAAACCCCCTGCGGCACAGGCAGGAAGAGGTGTCGCGAGGACGATCCTGCTTCCTCGTCTGCATCAGCCAAGAGATTGAAAACTGAGCCACCTGGGTCCCCAGTCCTGCAGGAGCAGGGTGCCATTCGGAAGActaagaagaaaagaaagaaagaaaaacggGCTGAACCGGAGGAGATGGAAGCAGACGTGGACCTAGCGGCAGCGCCTGAGGAGCCGGTTCTACATGAGATGACAAcagaaaggaagaagaaaaagaagacaaagaaagagaaggacCAAGGGGGGACAGAACAGAGCCCTTGGGAAAAGACAGAGGAGGAGTCTGGAATGAAGGAAGAGGAAGTGGAGGTCAAGATCGAGCCACTGCAGTCTGGCTGGGGGGATGAAGAGGATGTgagaaggaaaaagaagaagaagaaaaataatttaaaactggaGAACTAACTtgctttatgaaaatgtaaaaacaatatgtgGTTCCCAGGACTAATGATCACCTCTTCCTCAGCAAGCATGTAACTAATGAGATAACGGGACACTCTCAGTGGTCAATACTTACTGTTCCCTCATCACAATTATTTGTTACCATGTAAAATTTGtaagaaatattttgaatgtgcACCTTTTCCCTTTGTGATGTTCCAGTATATCTTTACCTGAGTTGTTTGGTacttttttgattaattaaatgttcgCTGAAATCAAATGCCTCAAACCTGCTATATTTATGTACAGAATTAAGTGTTATCTGCTGTGCAGGTTGGGCACATGTATGGCTGCAGTAGTACACAACACTCACCGGCAGGTAGTGCTATTACACTATAATGACTTTTCTAAGGGGGGCTGGTTATGAAACCCTCGTGTGTGTGCCGACatgactttgttttcttttccatccAGTTCTGCAGTGACGCATGGCCGTATGATCTAAaaggaatttttttttctcccaacaTCATTATCATACGCAGGCTGTAGGGTATAAAATATGCCTCCTACATAGCATAACCGAAATTGAGTTCAGcatgttaaaatacaatctTAATCAGTCCTTTATGTACCTGTATGCTAGcttttattatacagtatttggTAAGTTTATCTACAACGGAACCAGTATAAAGGTTGCATGAACCTAATCGTATACCGTATTATTTAAAGTTGATTCTGCAAATGTCCcttctaaataaaatgcattatttttaataataaaccaCATACACGTTTCGGtgcattgtgtatatatatattgcattcttCTGTTGGC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013570 True 1991 mRNA 0.44 3 36709375 36712969

Neighbor

gene id symbol gene type direction distance location
AMCG00013573 LOC107548551 coding upstream 16234 36692152 ~ 36693141 (+)
AMCG00013567 NA coding upstream 232983 36462852 ~ 36476392 (+)
AMCG00013568 NA coding upstream 264645 36434886 ~ 36444730 (+)
AMCG00013564 LOC106612713,LOC106580732,LOC105023074,LOC108435511 coding upstream 306357 36380969 ~ 36403018 (+)
AMCG00013559 shkbp1,LOC106612709 coding upstream 577116 36119566 ~ 36132259 (+)
AMCG00013574 irf2bp1,irf2bpl,LOC106580746,LOC108443036,LOC106612697 coding downstream 81072 36794041 ~ 36797976 (+)
AMCG00013576 NA coding downstream 93789 36806758 ~ 36810451 (+)
AMCG00013575 NA coding downstream 130559 36843528 ~ 36860797 (+)
AMCG00013583 clip3,LOC106612689,LOC106580752 coding downstream 264303 36977272 ~ 37013396 (+)
AMCG00013582 NA coding downstream 305482 37018451 ~ 37034474 (+)
G45397 NA non-coding upstream 4482 36704652 ~ 36704893 (+)
G45395 NA non-coding upstream 9312 36698798 ~ 36700063 (+)
G45373 NA non-coding upstream 95433 36613735 ~ 36613942 (+)
G45343 NA non-coding upstream 300640 36406043 ~ 36408735 (+)
G45301 NA non-coding upstream 521433 36160134 ~ 36187942 (+)
G45403 NA non-coding downstream 6683 36719652 ~ 36719989 (+)
G45405 NA non-coding downstream 14981 36727950 ~ 36729956 (+)
G45408 NA non-coding downstream 69600 36782569 ~ 36783620 (+)
G45499 NA non-coding downstream 350988 37063957 ~ 37064264 (+)
G45538 NA non-coding downstream 538232 37251201 ~ 37290765 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other upstream 63309 36620402 ~ 36646066 (+)
G45338 NA other upstream 305474 36403354 ~ 36403901 (+)
AMCG00013566 NA other upstream 339288 36338262 ~ 36370087 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other upstream 623532 36060755 ~ 36085843 (+)
G45209 LOC107575789 other upstream 1049542 35655302 ~ 35659833 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other downstream 23708 36736677 ~ 36738479 (+)
G45439 NA other downstream 161938 36874907 ~ 36877603 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other downstream 398799 37111768 ~ 37122611 (+)
AMCG00013595 NA other downstream 602244 37315213 ~ 37327711 (+)
AMCG00013616 ccdc9 other downstream 1092238 37805207 ~ 37817764 (+)

Expression


Co-expression Network