AMCG00013571 (eml2,LOC107757343,LOC107685092,LOC106530730)


Basic Information

Item Value
gene id AMCG00013571
gene name eml2,LOC107757343,LOC107685092,LOC106530730
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36620402 ~ 36646066 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013571
ATGGCTGAGAGGATCTCTTCTTACGGAAACCTTTATGACACCAGTTCTCTCCTCCAGTATTGCAACGATGACAACTTGTCAGCAAGCAGCTCCATGGAGGTGGATGACCGGCTGTCCTACCTTGAGCAGCGGGTCCAGCTACAGGAGGATGAGATCCAGGTACTGAAAGCTGCCCTGGCAGATGTACTGAGACGCCTGGGCTGCTGTGAGGAGCAGGGCCAGCTGTTTGGCAAGAGACTGGCACCCACTAAAGTGCGTCAGCTTCTACAAGCCTTACCATCCAAGCCCCACTTCAGTAATGGGTACCTACCACAGAAAAGGCTGGGGGGCTACCCCTCCTCACCCTCCTCCCCCAAGAAGGAGCTGGTCCAGTCCATTAAGAACATGAGGAGAAGCAGCTCCACAGAGCGTCTGACCGCGGTGAGGAGGGAGGCATCGACCGACTCCAGGAGCAGGACCACATCTTCCAGCAGTTCATCCAGTGGGAAGAAAGACAGTAGAAAAACCTCGCCCTTACTGTATTTCATAGATGATGGCCACGTGAAGATGTTTCTGCGTGGACGCCCGGTCACCATGCATCTGCCTGACCAGTTTAAAGGTACCTACAACCTGGACAGCAAACTGGACCTGCCTGAGAACAAACTCAAGCTTCACTATGGCTACCGAGGCAGAGACTGTCGCTGCAATCTGTTCCTGCTGCCCACCGGGGAGATTGTCTACTTCATCGCCTCCGTGGTGGTCCTCTACAATGTGGAGGAGCAGCAGCAAAGACACTACCTGGGCCACAACGATGATGTCAAATGTTTGGCAGTCCATCCAGACATGGTTACTGTAGCAACAGGACAAGTTGCTGGAAACTCCAAAGATGGCAAGCTACTGCCCCCTCATGTGCGAGTGTGGGACTCGGTCAGTCTGAACACTCTGCATGTTATTGGGATGGGTGTGTTTGATCGCGCAGTCACCTGTGTTGCCTTCTCCAAATCTAATGGCGGGGCCCATCTGTGTGCTGTGGATGATGCCAATGACCACATCCTGTCAGTGTGGGACTGGCATAAAGAGAAGCAATTAGCTGACGTGAAGAAACACGAGAAGCCAAAGTATGTTCTGTGCGTTGCCTTTGCAGAGAATGGAGATGCTATCACTGGTGGGAATCGTATCAGTCAGGTTGTGGCAGGCGCTCACGAGGGAGGGATCTTCTCGTTGTGTGTTCTGAAGGATGGGACGCTGTATAACAATGCTGCTATATCATTGGTGCAGGTGCCTGAAATGTTTGGGCCGGTTCGCTGCCTGACCGAGGGGAAGGAGGAGAGCCTGTTTGTGGGAACCACCAGGAACGCCATTCTCGAAGGCTCAATCTCAGGGAATCTCCGTCCAATAGTGCAGGGACACACCGATGAGCTGTGGGGGCTGGATGCTCACCCCAGCCTGGAGCAGTTTATCTCCTGTGGGCAGGACAAGTTGGTCCACCTCTGGGACATCTTGTCCCACCAGCCTCTGTGGAGCAAGTACATTGAGGATCCTGCACGCTCAGCTGGTTTCCATCCCAGTGGATCAGTGGTTGCCATAGGAACAATGACAGCGAGGTGGCTGGTGCTGGACACTGAGACCAAAGACCTTGTGTCTATGCACACAGATGGCAATGAAATCATCTCCATTGTTAAATATTCTCCAGATGGAAAGTACCTCGCTGTAGGATCCCATGACAACTTCATTTATGTTTATGAAGTGACCGAGAATGGGAAGAAATACAGTCGTGTGGGCAAATGCACGGGCCATTCTAGTTATGTGACCCATCTGGATTGGTCTATGGACAGCAAGTTTATTGTCACCAACTCAGGGGACTATGAAATCTTGTTCTGGGATGCCTCAAGCTGCAAACATGTGACCAATATAGACACTGTACGCAACCTGGAGTGGGCAACCTCAACGTGTGTCCTGGGCTTCGCTGTGTTTGGCATTTGGCCAGACGGAGTGGACGGAACGGACATTAACGCTGTGTGCCGGTCGCATAACCAGAAGTTGCTGGCCTCTGCGGATGATTTTGGCAATGTAAACTTGTTCTCCAACCCCTGTTGCCAGCCACGGGCCCCAAGCTACGTCTATGGTGGCCACAGTAGCCATGTGACCAATGTTGCCTTTCTCCATGATGACAGTCACCTGATCTCCATTGGAGGGAAGGACATGAGCATCATACAGTGGACAATTGCTTAG
>TU56545
TGGAGGAGAAGTTCCCTGTAACCAGAGAGAAAGCAGTTAGTTTTCCTGACTGAAGCCCGGCTTGCTCTACTCCAGTTTGTTTTTGCTCAGCTTGGTTGTACAGCAGCTGTCGCCATGAAAAAGTCATCCAGCAAATCCAAAGAGACCACCTTCAGTGCTGATGATGGCCACGTGAAGATGTTTCTGCGTGGACGCCCGGTCACCATGCATCTGCCTGACCAGTTTAAAGGTACCTACAACCTGGACAGCAAACTGGACCTGCCTGAGAACAAACTCAAGCTTCAGTGGGTCTATGGCTACCGAGGCAGAGACTGTCGCTGCAATCTGTTCCTGCTGCCCACCGGGGAGATTGTCTACTTCATCGCCTCCGTGGTGGTCCTCTACAATGTGGAGGAGCAGCAGCAAAGACACTACCTGGGCCACAACGATGATGTCAAATGTTTGGCAGTCCATCCAGACATGGTTACTGTAGCAACAGGACAAGTTGCTGGAAACTCCAAAGATGGCAAGCTACTGCCCCCTCATGTGCGAGTGTGGGACTCGGTCAGTCTGAACACTCTGCATGTTATTGGGATGGGTGTGTTTGATCGCGCAGTCACCTGTGTTGCCTTCTCCAAATCTAATGGCGGGGCCCATCTGTGTGCTGTGGATGATGCCAATGACCACATCCTGTCAGTGTGGGACTGGCATAAAGAGAAGCAATTAGCTGACGTGAAGG
>TU56546
GAAGTTTTAACCTAAGTATTGTATTTTGCCTCTGTATTTTAGAAACACGAGAAGCCAAAGTATGTTCTGTGCGTTGCCTTTGCAGAGAATGGAGATGCTATCACTGGTGACTCCAGTGGGAATATCTATATATGGGGCAAAGGTGGGAATCGTATCAGTCAGGTTGTGGCAGGCGCTCACGAGGGAGGGATCTTCTCGTTGTGTGTTCTGAAGGATGGGACGCTGGTATCTGGGGGAGGGAAAGATCGCANNNN

Function

symbol description
eml2 Predicted to enable microtubule binding activity. Predicted to be involved in microtubule cytoskeleton organization. Predicted to colocalize with mitotic spindle. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; hatching gland; lens placode; and nervous system. Orthologous to human EML2 (EMAP like 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013571 True 2211 mRNA 0.52 20 36620402 36646066
TU56545 False 718 TUCP 0.52 7 36630977 36638148
TU56546 False 254 lncRNA 0.46 2 36639642 36641119

Neighbor

gene id symbol gene type direction distance location
AMCG00013567 NA coding upstream 144010 36462852 ~ 36476392 (+)
AMCG00013568 NA coding upstream 175672 36434886 ~ 36444730 (+)
AMCG00013564 LOC106612713,LOC106580732,LOC105023074,LOC108435511 coding upstream 217384 36380969 ~ 36403018 (+)
AMCG00013559 shkbp1,LOC106612709 coding upstream 488143 36119566 ~ 36132259 (+)
AMCG00013558 sptbn4,LOC106612708 coding upstream 509339 36097155 ~ 36111063 (+)
AMCG00013573 LOC107548551 coding downstream 46086 36692152 ~ 36693141 (+)
AMCG00013570 NA coding downstream 63309 36709375 ~ 36712969 (+)
AMCG00013574 irf2bp1,irf2bpl,LOC106580746,LOC108443036,LOC106612697 coding downstream 147975 36794041 ~ 36797976 (+)
AMCG00013576 NA coding downstream 160692 36806758 ~ 36810451 (+)
AMCG00013575 NA coding downstream 197462 36843528 ~ 36860797 (+)
G45373 NA non-coding upstream 6460 36613735 ~ 36613942 (+)
G45343 NA non-coding upstream 211667 36406043 ~ 36408735 (+)
G45301 NA non-coding upstream 432460 36160134 ~ 36187942 (+)
G45276 NA non-coding upstream 503071 36114055 ~ 36117331 (+)
G45230 NA non-coding upstream 635969 35974238 ~ 35984433 (+)
G45395 NA non-coding downstream 52732 36698798 ~ 36700063 (+)
G45397 NA non-coding downstream 58586 36704652 ~ 36704893 (+)
G45403 NA non-coding downstream 73586 36719652 ~ 36719989 (+)
G45405 NA non-coding downstream 81884 36727950 ~ 36729956 (+)
G45408 NA non-coding downstream 136503 36782569 ~ 36783620 (+)
G45338 NA other upstream 216501 36403354 ~ 36403901 (+)
AMCG00013566 NA other upstream 250315 36338262 ~ 36370087 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other upstream 534559 36060755 ~ 36085843 (+)
G45209 LOC107575789 other upstream 960569 35655302 ~ 35659833 (+)
G45174 NA other upstream 1282350 35334890 ~ 35338052 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other downstream 90611 36736677 ~ 36738479 (+)
G45439 NA other downstream 228841 36874907 ~ 36877603 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other downstream 465702 37111768 ~ 37122611 (+)
AMCG00013595 NA other downstream 669147 37315213 ~ 37327711 (+)
AMCG00013616 ccdc9 other downstream 1159141 37805207 ~ 37817764 (+)

Expression


Co-expression Network