AMCG00013573 (LOC107548551)


Basic Information

Item Value
gene id AMCG00013573
gene name LOC107548551
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36692152 ~ 36693141 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013573
ATGGCCCTCTGGGCTGCATACCTGCAGGTCAAACAAAAGAATGAACTGGGGATCTACCTGATCAACCTCTCAGTGGCTGACCTTCTGTATATCGCCACCTTGCCCCTATGGATTGACTACTTCCTGCACCACGACAAATGGATCCATGGGCATGAGTCCTGCAAATTCTTTGGCTTCATCTTCTACACCAACATTTACGTCAGCATTGCCTTCCTGTGCTGCATCTCCCTGGACCGCTACCTGGCCGTGGCACATCCACTAAAATTCGCCAAGATCCGCAGGATCAAGACAGCGGTGCTGGTGAGCCTAATGGTGTGGGCCATCGAGATCGGGGCCAACTCTGCACCCCTTTTCCACAACGAGCTCTTCCAGGACCGCTACAATCACACCTTCTGCTTCGAGAAGTACCCCATGGAGGACTGGGTGGCCTGGATGAACCTATACCGTATTTTCCTAGGGTTCCTTTTCCCCTGGGTGCTCATGCTCTTTTCCTACCAGGGGATCCTCAAGGCCATCAAGGGGAACATCTCCACAGAGAAACAGGAGAAAGCCAAGATCAAGCGTCTTGCTCTGAGCTTGATCATGATCATAATTTTCTGCTTTGCCCCCTACCACATGGTCCTTCTGTCACGCAGCGTTGTTTATTTGAGTAAGCCTTGTGACTGCAGCTTTGAAGAGAACATTTTCACAACCTACCATGCCACCCTGGCCCTCACGAGCCTGAACTGCGTGGCTGACCCCATCCTGTACTGCTTTGTGAATGAGGGAGCACGCAGTGACGTGACCCAGGCGCTGGGGACCCTCGTCCGCCTCTTCACCAGGGGCAAGTCACTAGAAACTCTGACCAATGGCTCGATCACAGTGGAAACCCCCTTGTCCTCCAAAAAACCTAGCTTTTACAGCGAAGCCAAGCCCAGCACATACAAAACTGAGCTGGCGGCTCTCCGAGAAGAGTGCCTTCAGATGAAAATACTGACCGTCAAAAAGTAA

Function

NR:

description
PREDICTED: G-protein coupled receptor 4-like

GO: NA

KEGG:

id description
K04312 GPR4; G protein-coupled receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013573 True 990 mRNA 0.52 1 36692152 36693141

Neighbor

gene id symbol gene type direction distance location
AMCG00013567 NA coding upstream 215760 36462852 ~ 36476392 (+)
AMCG00013568 NA coding upstream 247422 36434886 ~ 36444730 (+)
AMCG00013564 LOC106612713,LOC106580732,LOC105023074,LOC108435511 coding upstream 289134 36380969 ~ 36403018 (+)
AMCG00013559 shkbp1,LOC106612709 coding upstream 559893 36119566 ~ 36132259 (+)
AMCG00013558 sptbn4,LOC106612708 coding upstream 581089 36097155 ~ 36111063 (+)
AMCG00013570 NA coding downstream 16234 36709375 ~ 36712969 (+)
AMCG00013574 irf2bp1,irf2bpl,LOC106580746,LOC108443036,LOC106612697 coding downstream 100900 36794041 ~ 36797976 (+)
AMCG00013576 NA coding downstream 113617 36806758 ~ 36810451 (+)
AMCG00013575 NA coding downstream 150387 36843528 ~ 36860797 (+)
AMCG00013583 clip3,LOC106612689,LOC106580752 coding downstream 284131 36977272 ~ 37013396 (+)
G45373 NA non-coding upstream 78210 36613735 ~ 36613942 (+)
G45343 NA non-coding upstream 283417 36406043 ~ 36408735 (+)
G45301 NA non-coding upstream 504210 36160134 ~ 36187942 (+)
G45276 NA non-coding upstream 574821 36114055 ~ 36117331 (+)
G45230 NA non-coding upstream 707719 35974238 ~ 35984433 (+)
G45395 NA non-coding downstream 5657 36698798 ~ 36700063 (+)
G45397 NA non-coding downstream 11511 36704652 ~ 36704893 (+)
G45403 NA non-coding downstream 26511 36719652 ~ 36719989 (+)
G45405 NA non-coding downstream 34809 36727950 ~ 36729956 (+)
G45408 NA non-coding downstream 89428 36782569 ~ 36783620 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other upstream 46086 36620402 ~ 36646066 (+)
G45338 NA other upstream 288251 36403354 ~ 36403901 (+)
AMCG00013566 NA other upstream 322065 36338262 ~ 36370087 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other upstream 606309 36060755 ~ 36085843 (+)
G45209 LOC107575789 other upstream 1032319 35655302 ~ 35659833 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other downstream 43536 36736677 ~ 36738479 (+)
G45439 NA other downstream 181766 36874907 ~ 36877603 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other downstream 418627 37111768 ~ 37122611 (+)
AMCG00013595 NA other downstream 622072 37315213 ~ 37327711 (+)
AMCG00013616 ccdc9 other downstream 1112066 37805207 ~ 37817764 (+)

Expression


Co-expression Network